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8JO0
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BU of 8jo0 by Molmil
The Cryo-EM structure of a heptameric CED-4/CED-3 catalytic complex
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Cell death protein 4, MAGNESIUM ION
Authors:Li, Y, Shi, Y.
Deposit date:2023-06-06
Release date:2023-06-28
Last modified:2023-08-02
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structural insights into CED-3 activation.
Life Sci Alliance, 6, 2023
8JNS
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BU of 8jns by Molmil
cryo-EM structure of a CED-4 hexamer
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Cell death protein 4, MAGNESIUM ION
Authors:Li, Y, Shi, Y.
Deposit date:2023-06-06
Release date:2023-06-28
Last modified:2023-08-02
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Structural insights into CED-3 activation.
Life Sci Alliance, 6, 2023
7UR2
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BU of 7ur2 by Molmil
Crystal structure of the Sec14 domain of the RhoGEF Kalirin
Descriptor: Isoform 7 of Kalirin, SULFATE ION
Authors:Li, Y, Doukov, T.I, Hao, B.
Deposit date:2022-04-21
Release date:2023-01-18
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Structure of the Sec14 domain of Kalirin reveals a distinct class of lipid-binding module in RhoGEFs.
Nat Commun, 14, 2023
5YDM
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BU of 5ydm by Molmil
The crystal structure of the Acyl Transferase domain of SpnD complex with benzylmalonyl
Descriptor: (2R)-2-methanoyl-3-phenyl-propanoic acid, PKS
Authors:Li, Y, Qu, X.D, Zhou, J.H.
Deposit date:2017-09-13
Release date:2018-05-23
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural Basis of a Broadly Selective Acyltransferase from the Polyketide Synthase of Splenocin.
Angew. Chem. Int. Ed. Engl., 57, 2018
7E7C
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BU of 7e7c by Molmil
Crystal structure of ENL YEATS domain T1 mutant in complex with histone H3 acetylation at K27
Descriptor: 1,2-ETHANEDIOL, Histone H3K27ac(24-27) peptide, IODIDE ION, ...
Authors:Li, Y, Li, H.
Deposit date:2021-02-25
Release date:2022-04-06
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Crystal structure of ENL YEATS domain T1 mutant in complex with histone H3 acetylation at K27
To Be Published
5YDL
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BU of 5ydl by Molmil
The crystal structure of the Acyl Transferase domain of SpnD complex with 2-(pent-4-yn-1-yl)malonyl
Descriptor: (2R)-2-methanoylhept-6-ynoic acid, PKS
Authors:Li, Y, Qu, X.D, Zhou, J.H.
Deposit date:2017-09-13
Release date:2018-05-23
Method:X-RAY DIFFRACTION (2.402 Å)
Cite:Structural Basis of a Broadly Selective Acyltransferase from the Polyketide Synthase of Splenocin.
Angew. Chem. Int. Ed. Engl., 57, 2018
5YDA
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BU of 5yda by Molmil
The crystal structure of the Acyl Transferase domain of SpnD
Descriptor: PKS
Authors:Li, Y, Qu, X.D, Zhou, J.H.
Deposit date:2017-09-12
Release date:2018-05-23
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.353 Å)
Cite:Structural Basis of a Broadly Selective Acyltransferase from the Polyketide Synthase of Splenocin.
Angew. Chem. Int. Ed. Engl., 57, 2018
5VZT
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BU of 5vzt by Molmil
Crystal structure of the Skp1-FBXO31 complex
Descriptor: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, F-box only protein 31, PHOSPHATE ION, ...
Authors:Li, Y, Jin, K, Hao, B.
Deposit date:2017-05-29
Release date:2018-01-17
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural basis of the phosphorylation-independent recognition of cyclin D1 by the SCFFBXO31 ubiquitin ligase.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5VZU
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BU of 5vzu by Molmil
Crystal structure of the Skp1-FBXO31-cyclin D1 complex
Descriptor: Cyclin D1, F-box only protein 31, PHOSPHATE ION, ...
Authors:Li, Y, Jin, K, Hao, B.
Deposit date:2017-05-29
Release date:2018-01-17
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural basis of the phosphorylation-independent recognition of cyclin D1 by the SCFFBXO31 ubiquitin ligase.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
7E7A
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BU of 7e7a by Molmil
Crystal structure of apo ENL YEATS domain T3 mutant
Descriptor: Protein ENL
Authors:Li, Y, Li, H.
Deposit date:2021-02-25
Release date:2021-07-07
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.64 Å)
Cite:Crystal structure of ENL YEATS domain T1 mutant in complex with histone H3 acetylation at K27
To Be Published
6N1I
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BU of 6n1i by Molmil
Cryo-EM structure of NLRC4-CARD filament
Descriptor: NLR family CARD domain-containing protein 4
Authors:Li, Y, Fu, T, Wu, H.
Deposit date:2018-11-08
Release date:2018-12-05
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.58 Å)
Cite:Cryo-EM structures of ASC and NLRC4 CARD filaments reveal a unified mechanism of nucleation and activation of caspase-1.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6N1H
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BU of 6n1h by Molmil
Cryo-EM structure of ASC-CARD filament
Descriptor: Apoptosis-associated speck-like protein containing a CARD
Authors:Li, Y, Fu, T, Wu, H.
Deposit date:2018-11-08
Release date:2018-12-05
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.17 Å)
Cite:Cryo-EM structures of ASC and NLRC4 CARD filaments reveal a unified mechanism of nucleation and activation of caspase-1.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
8GJW
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BU of 8gjw by Molmil
Structure of a cGAS-like receptor Cv-cGLR1 from C. virginica
Descriptor: SULFATE ION, cGAS-like receptor 1
Authors:Li, Y, Morehouse, B.R, Slavik, K.M, Liu, J, Toyoda, H, Kranzusch, P.J.
Deposit date:2023-03-16
Release date:2023-07-05
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:cGLRs are a diverse family of pattern recognition receptors in innate immunity.
Cell, 186, 2023
8GJY
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BU of 8gjy by Molmil
Structure of a cGAS-like receptor Sp-cGLR1 from S. pistillata
Descriptor: cGAS-like receptor 1
Authors:Li, Y, Toyoda, H, Slavik, K.M, Morehouse, B.R, Kranzusch, P.J.
Deposit date:2023-03-16
Release date:2023-07-05
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:cGLRs are a diverse family of pattern recognition receptors in innate immunity.
Cell, 186, 2023
8GJZ
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BU of 8gjz by Molmil
Structure of a STING receptor from S. pistillata Sp-STING1 bound to 2'3'-cUA
Descriptor: 2'3'-cUA, Stimulator of interferon genes protein
Authors:Li, Y, Toyoda, H, Slavik, K.M, Morehouse, B.R, Kranzusch, P.J.
Deposit date:2023-03-16
Release date:2023-07-05
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (2.92 Å)
Cite:cGLRs are a diverse family of pattern recognition receptors in innate immunity.
Cell, 186, 2023
7CWW
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BU of 7cww by Molmil
Crystal structure of TsrL
Descriptor: 3,6,9,12,15,18,21,24,27,30,33,36-dodecaoxaoctatriacontane-1,38-diol, TsrE
Authors:Li, Y, Pan, L.F.
Deposit date:2020-08-31
Release date:2021-09-15
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:crystal structure of TsrL
To Be Published
7F68
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BU of 7f68 by Molmil
Crystal structure of N-ras S89D
Descriptor: GTPase NRas, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Li, Y, Sun, Q.
Deposit date:2021-06-24
Release date:2022-06-29
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.24 Å)
Cite:Crystal structure of N-ras S89D
To Be Published
3KUE
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BU of 3kue by Molmil
Crystal structure of E. coli HPPK(E77A)
Descriptor: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase, ACETATE ION, CHLORIDE ION
Authors:Blaszczyk, J, Li, Y, Yan, H, Ji, X.
Deposit date:2009-11-27
Release date:2010-11-24
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.538 Å)
Cite:Roles of residues E77 and H115 in E. coli HPPK
To be Published
3KUG
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BU of 3kug by Molmil
Crystal structure of E. coli HPPK(H115A)
Descriptor: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Authors:Blaszczyk, J, Li, Y, Yan, H, Ji, X.
Deposit date:2009-11-27
Release date:2010-11-24
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.996 Å)
Cite:Roles of residues E77 and H115 in E. coli HPPK
To be Published
3KUH
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BU of 3kuh by Molmil
Crystal structure of E. coli HPPK(H115A) in complex with AMPCPP and HP
Descriptor: 2-AMINO-6-HYDROXYMETHYL-7,8-DIHYDRO-3H-PTERIDIN-4-ONE, 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase, ACETATE ION, ...
Authors:Blaszczyk, J, Li, Y, Yan, H, Ji, X.
Deposit date:2009-11-27
Release date:2010-11-24
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Roles of residues E77 and H115 in E. coli HPPK
To be Published
7R2E
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BU of 7r2e by Molmil
Structure of human Senp7 with SUMO2
Descriptor: Sentrin-specific protease 7, Small ubiquitin-related modifier 3, prop-2-en-1-amine
Authors:Reverter, D, Li, Y.
Deposit date:2022-02-04
Release date:2022-12-07
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Structural Basis for the SUMO2 Isoform Specificity of SENP7.
J.Mol.Biol., 434, 2022
7BT6
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BU of 7bt6 by Molmil
Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 Angstroms resolution(state R1)
Descriptor: 60S ribosomal protein L11-A, 60S ribosomal protein L13-A, 60S ribosomal protein L14-A, ...
Authors:Li, Y, Wilson, D.M.
Deposit date:2020-03-31
Release date:2020-10-28
Method:ELECTRON MICROSCOPY (3.12 Å)
Cite:Structural insights into assembly of the ribosomal nascent polypeptide exit tunnel.
Nat Commun, 11, 2020
7BTB
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BU of 7btb by Molmil
Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2)
Descriptor: 60S ribosomal protein L11-A, 60S ribosomal protein L13-A, 60S ribosomal protein L14-A, ...
Authors:Li, Y, Wilson, D.M.
Deposit date:2020-04-01
Release date:2020-10-28
Method:ELECTRON MICROSCOPY (3.22 Å)
Cite:Structural insights into assembly of the ribosomal nascent polypeptide exit tunnel.
Nat Commun, 11, 2020
8JYZ
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BU of 8jyz by Molmil
Cryo-EM structure of RCD-1 pore from Neurospora crassa
Descriptor: Gasdermin-like protein rcd-1-1, Gasdermin-like protein rcd-1-2
Authors:Hou, Y.J, Sun, Q, Li, Y, Ding, J.
Deposit date:2023-07-04
Release date:2024-05-01
Method:ELECTRON MICROSCOPY (3.63 Å)
Cite:Cleavage-independent activation of ancient eukaryotic gasdermins and structural mechanisms
Science, 2024
6DWO
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BU of 6dwo by Molmil
Crystal structure of alpha-1-2-mannosidase from Enterococcus faecalis V583
Descriptor: ACETATE ION, Alpha-1,2-mannosidase, CALCIUM ION, ...
Authors:Fisher, A.J, Li, Y.
Deposit date:2018-06-26
Release date:2019-10-30
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Enterococcus faecalis alpha 1-2-mannosidase (EfMan-I): an efficient catalyst for glycoprotein N-glycan modification.
Febs Lett., 594, 2020

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PDB entries from 2024-05-01

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