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7UXE
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BU of 7uxe by Molmil
Pseudomonas phage E217 small terminase (TerS)
Descriptor: Small terminase
Authors:Lokareddy, R.K, Hou, C.-F.D, Doll, S.G, Li, F, Gillilan, R, Forti, F, Briani, F, Cingolani, G.
Deposit date:2022-05-05
Release date:2022-09-28
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (3.38 Å)
Cite:Terminase Subunits from the Pseudomonas-Phage E217.
J.Mol.Biol., 434, 2022
8EOE
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BU of 8eoe by Molmil
Mycobacterium tuberculosis transcription elongation complex with Bacillus subtilis NusG (EC_LG)
Descriptor: DNA (35-MER), DNA (38-MER), DNA-directed RNA polymerase subunit alpha, ...
Authors:Vishwakarm, R.K, Murakami, K.S.
Deposit date:2022-10-03
Release date:2023-02-01
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Allosteric mechanism of transcription inhibition by NusG-dependent pausing of RNA polymerase.
Proc.Natl.Acad.Sci.USA, 120, 2023
8EOF
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BU of 8eof by Molmil
Mycobacterium tuberculosis transcription elongation complex with Bacillus subtilis NusG (EC_PG)
Descriptor: DNA (35-MER), DNA (38-MER), DNA-directed RNA polymerase subunit alpha, ...
Authors:Vishwakarm, R.K, Murakami, K.S.
Deposit date:2022-10-03
Release date:2023-02-01
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Allosteric mechanism of transcription inhibition by NusG-dependent pausing of RNA polymerase.
Proc.Natl.Acad.Sci.USA, 120, 2023
5JJ3
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BU of 5jj3 by Molmil
Refined Structure of the Mature Virion Conformation of P22 Portal Protein
Descriptor: Portal protein
Authors:Lokareddy, R.K, Sankhala, R.S, Cingolani, G.
Deposit date:2016-04-22
Release date:2017-02-08
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (7 Å)
Cite:Portal protein functions akin to a DNA-sensor that couples genome-packaging to icosahedral capsid maturation.
Nat Commun, 8, 2017
5JJ1
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BU of 5jj1 by Molmil
Structure of the Immature Procapsid Conformation of P22 Portal Protein
Descriptor: Portal protein
Authors:Lokareddy, R.K, Cingolani, G.
Deposit date:2016-04-22
Release date:2017-02-08
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Portal protein functions akin to a DNA-sensor that couples genome-packaging to icosahedral capsid maturation.
Nat Commun, 8, 2017
8EOT
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BU of 8eot by Molmil
M. tuberculosis RNAP elongation complex with NusG
Descriptor: DNA (31-MER), DNA (33-MER), DNA-directed RNA polymerase subunit alpha, ...
Authors:Vishwakarma, R.K, Murakami, K.S.
Deposit date:2022-10-04
Release date:2023-02-01
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Allosteric mechanism of transcription inhibition by NusG-dependent pausing of RNA polymerase.
Proc.Natl.Acad.Sci.USA, 120, 2023
8EOS
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BU of 8eos by Molmil
M. tuberculosis RNAP elongation complex with NusG and CMPCPP
Descriptor: 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]cytidine, DNA (36-MER), DNA (38-MER), ...
Authors:Vishwakarma, R.K, Murakami, K.S.
Deposit date:2022-10-04
Release date:2023-02-01
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Allosteric mechanism of transcription inhibition by NusG-dependent pausing of RNA polymerase.
Proc.Natl.Acad.Sci.USA, 120, 2023
8EXY
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BU of 8exy by Molmil
M. tuberculosis RNAP paused complex with B. subtilis NusG and GMPCPP
Descriptor: DNA (38-MER), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ...
Authors:Vishwakarma, R.K, Murakami, K.S.
Deposit date:2022-10-26
Release date:2023-02-01
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Allosteric mechanism of transcription inhibition by NusG-dependent pausing of RNA polymerase.
Proc.Natl.Acad.Sci.USA, 120, 2023
8EHQ
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BU of 8ehq by Molmil
Mycobacterium tuberculosis paused transcription complex with Bacillus subtilis NusG
Descriptor: DNA (38-MER), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ...
Authors:Vishwakarma, R.K, Murakami, K.S.
Deposit date:2022-09-14
Release date:2023-02-01
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Allosteric mechanism of transcription inhibition by NusG-dependent pausing of RNA polymerase.
Proc.Natl.Acad.Sci.USA, 120, 2023
8EJ3
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BU of 8ej3 by Molmil
M. tuberculosis RNAP pause escaped complex with Bacillus subtilis NusG and GMPCPP
Descriptor: DNA (29-MER), DNA (32-MER), DNA-directed RNA polymerase subunit alpha, ...
Authors:Vishwakarma, R.K, Murakami, K.S.
Deposit date:2022-09-16
Release date:2023-02-01
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.13 Å)
Cite:Allosteric mechanism of transcription inhibition by NusG-dependent pausing of RNA polymerase.
Proc.Natl.Acad.Sci.USA, 120, 2023
4PVZ
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BU of 4pvz by Molmil
Structure of yeast importin a bound to the membrane protein Nuclear Localization Signal sequence of INM protein Heh2
Descriptor: Importin subunit alpha, Inner nuclear membrane protein HEH2
Authors:Lokareddy, R.K, Hapsari, A.R, van Rheenen, M, Bhardwaj, A, Veenhoff, L.M, Cingolani, C.
Deposit date:2014-03-18
Release date:2015-08-26
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Distinctive Properties of the Nuclear Localization Signals of Inner Nuclear Membrane Proteins Heh1 and Heh2.
Structure, 23, 2015
4HRF
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BU of 4hrf by Molmil
Atomic structure of DUSP26
Descriptor: Dual specificity protein phosphatase 26
Authors:Lokareddy, R.K, Bhardwaj, A, Cingolani, G.
Deposit date:2012-10-27
Release date:2013-01-23
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Atomic structure of dual-specificity phosphatase 26, a novel p53 phosphatase.
Biochemistry, 52, 2013
4XZR
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BU of 4xzr by Molmil
Structure of yeast importin a bound to the membrane protein Nuclear Localization Signal sequence of INM protein Heh1
Descriptor: Importin subunit alpha, Inner nuclear membrane protein SRC1
Authors:Lokareddy, R.K, Cingolani, G.
Deposit date:2015-02-04
Release date:2015-06-17
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Distinctive Properties of the Nuclear Localization Signals of Inner Nuclear Membrane Proteins Heh1 and Heh2.
Structure, 23, 2015
3GZ2
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BU of 3gz2 by Molmil
Crystal structure of IpgC in complex with an IpaB peptide
Descriptor: Chaperone protein ipgC, GLYCEROL, IMIDAZOLE, ...
Authors:Lokareddy, R.K, Lunelli, M, Kolbe, M.
Deposit date:2009-04-06
Release date:2010-04-21
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Combination of two separate binding domains defines stoichiometry between type III secretion system chaperone IpgC and translocator protein IpaB
J.Biol.Chem., 285, 2010
4YI0
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BU of 4yi0 by Molmil
Structure of mouse importin a1 bound to Pom121NLS
Descriptor: Importin subunit alpha-1, Nuclear envelope pore membrane protein POM 121
Authors:Lokareddy, R.K, Cingolani, G.
Deposit date:2015-02-27
Release date:2016-01-13
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.806 Å)
Cite:Mammalian Pom121 and yeast Heh2 share IBB-like NLSs that support targeting to the inner nuclear membrane
To Be Published
6K59
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BU of 6k59 by Molmil
Structure of Glargine insulin in 20% acetic acid-d4 (pH 1.9)
Descriptor: Glargine Insulin Chain-A, Glargine insulin Chain-B
Authors:Ratha, B.N, Kar, R.K, Bhunia, A.
Deposit date:2019-05-28
Release date:2020-05-06
Method:SOLUTION NMR
Cite:Molecular Details of a Salt Bridge and Its Role in Insulin Fibrillation by NMR and Raman Spectroscopic Analysis.
J.Phys.Chem.B, 124, 2020
6KH9
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BU of 6kh9 by Molmil
Solution structure of bovine insulin amyloid intermediate-1
Descriptor: Insulin A chain, Insulin B chain
Authors:Ratha, B.N, Kar, R.K, Brender, J.B, Bhunia, A.
Deposit date:2019-07-14
Release date:2020-08-12
Last modified:2020-11-18
Method:SOLUTION NMR
Cite:High-resolution structure of a partially folded insulin aggregation intermediate.
Proteins, 88, 2020
6KH8
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BU of 6kh8 by Molmil
Solution structure of Zn free Bovine Pancreatic Insulin in 20% acetic acid-d4 (pH 1.9)
Descriptor: Insulin A Chain, Insulin B chain
Authors:Bhunia, A, Ratha, B.N, Kar, R.K, Brender, J.R.
Deposit date:2019-07-14
Release date:2020-10-07
Last modified:2020-11-18
Method:SOLUTION NMR
Cite:High-resolution structure of a partially folded insulin aggregation intermediate.
Proteins, 88, 2020
6KHA
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BU of 6kha by Molmil
Solution structure of bovine insulin amyloid intermediate-2
Descriptor: Insulin A chain, Insulin B chain
Authors:Ratha, B.N, Kar, R.K, Brender, J.B, Bhunia, A.
Deposit date:2019-07-14
Release date:2020-08-12
Last modified:2020-11-18
Method:SOLUTION NMR
Cite:High-resolution structure of a partially folded insulin aggregation intermediate.
Proteins, 88, 2020
2M2C
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BU of 2m2c by Molmil
Solution structure of Duplex DNA
Descriptor: DNA (5'-D(*CP*GP*CP*GP*TP*AP*GP*CP*AP*TP*GP*CP*GP*C)-3'), DNA (5'-D(*GP*CP*GP*CP*AP*TP*GP*CP*TP*AP*CP*GP*CP*G)-3')
Authors:Ghosh, A, Kar, R.K, Chatterjee, S, Bhunia, A.
Deposit date:2012-12-18
Release date:2013-01-23
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Indolicidin targets duplex DNA: structural and mechanistic insight through a combination of spectroscopy and microscopy.
Chemmedchem, 9, 2014
8SYI
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BU of 8syi by Molmil
Cyanobacterial RNAP-EC
Descriptor: DNA (37-MER), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ...
Authors:Qayyum, M.Z, Imashimizu, M, Leanca, M, Vishwakarma, R.K, Bradley Riaz, A, Yuzenkova, Y, Murakami, K.S.
Deposit date:2023-05-25
Release date:2023-07-05
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (2.94 Å)
Cite:Structure and function of the Si3 insertion integrated into the trigger loop/helix of cyanobacterial RNA polymerase.
Proc.Natl.Acad.Sci.USA, 121, 2024
8URW
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BU of 8urw by Molmil
Cyanobacterial RNA polymerase elongation complex with NusG and CTP
Descriptor: CYTIDINE-5'-TRIPHOSPHATE, DNA (40-MER), DNA-directed RNA polymerase subunit alpha, ...
Authors:Qayyum, M.Z, Imashimizu, M, Leanca, M, Vishwakarma, R.K, Bradley Riaz, A, Yuzenkova, Y, Murakami, K.S.
Deposit date:2023-10-26
Release date:2023-12-27
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (2.79 Å)
Cite:Structure and function of the Si3 insertion integrated into the trigger loop/helix of cyanobacterial RNA polymerase.
Proc.Natl.Acad.Sci.USA, 121, 2024
7LFC
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BU of 7lfc by Molmil
Structure of importin a3 bound to p50 NLS
Descriptor: Importin subunit alpha-3, Nuclear factor NF-kappa-B p105 subunit
Authors:Florio, T.J, Lokareddy, R.K, Cingolani, G.
Deposit date:2021-01-16
Release date:2022-01-19
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Differential recognition of canonical NF-kappa B dimers by Importin alpha 3.
Nat Commun, 13, 2022
7LF4
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BU of 7lf4 by Molmil
Structure of importin a3 bound to the p50- and p65-NLSs
Descriptor: Importin subunit alpha-3, Nuclear factor NF-kappa-B p105 subunit, Transcription factor p65
Authors:Florio, T.J, Lokareddy, R.K, Cingolani, G.
Deposit date:2021-01-15
Release date:2022-01-19
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Differential recognition of canonical NF-kappa B dimers by Importin alpha 3.
Nat Commun, 13, 2022
7LET
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BU of 7let by Molmil
Structure of importin a2 bound to the p50- and p65-NLSs
Descriptor: Importin subunit alpha-1, Nuclear factor NF-kappa-B p105 subunit, Transcription factor p65
Authors:Florio, T.J, Lokareddy, R.K, Cingolani, G.
Deposit date:2021-01-15
Release date:2022-01-19
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Differential recognition of canonical NF-kappa B dimers by Importin alpha 3.
Nat Commun, 13, 2022

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