Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
8TLT
DownloadVisualize
BU of 8tlt by Molmil
Cryo-EM structure of Rev1(deltaN)-Polzeta-DNA-dCTP complex
Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*TP*AP*AP*TP*GP*GP*TP*AP*GP*GP*GP*GP*AP*GP*GP*GP*AP*AP*T)-3'), ...
Authors:Malik, R, Aggarwal, A.K.
Deposit date:2023-07-27
Release date:2024-05-15
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (2.85 Å)
Cite:Cryo-EM structure of the Rev1-Pol zeta holocomplex reveals the mechanism of their cooperativity in translesion DNA synthesis.
Nat.Struct.Mol.Biol., 2024
6P1H
DownloadVisualize
BU of 6p1h by Molmil
Cryo-EM Structure of DNA Polymerase Delta Holoenzyme
Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (30-MER), ...
Authors:Jain, R, Rice, W, Aggarwal, A.K.
Deposit date:2019-05-19
Release date:2019-10-02
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Cryo-EM structure and dynamics of eukaryotic DNA polymerase delta holoenzyme.
Nat.Struct.Mol.Biol., 26, 2019
6Q02
DownloadVisualize
BU of 6q02 by Molmil
Polymerase Eta-catalyzed insertion of the mismatched A opposite template cytarabine (AraC) residue
Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine, DNA Primer Strand, DNA polymerase eta, ...
Authors:Rechkoblit, O, Aggarwal, A.K.
Deposit date:2019-08-01
Release date:2019-11-20
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Structural insights into mutagenicity of anticancer nucleoside analog cytarabine during replication by DNA polymerase eta.
Sci Rep, 9, 2019
6PZ3
DownloadVisualize
BU of 6pz3 by Molmil
Polymerase Eta-catalyzed insertion of correct G opposite template cytarabine (AraC) residue
Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosine, DNA Primer strand, DNA polymerase eta, ...
Authors:Rechkoblit, O, Aggarwal, A.K.
Deposit date:2019-07-31
Release date:2019-11-20
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.395 Å)
Cite:Structural insights into mutagenicity of anticancer nucleoside analog cytarabine during replication by DNA polymerase eta.
Sci Rep, 9, 2019
7S0T
DownloadVisualize
BU of 7s0t by Molmil
Structure of DNA polymerase zeta with mismatched DNA
Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (30-MER), ...
Authors:Malik, R, Ubarretxena, I.B, Aggarwal, A.K.
Deposit date:2021-08-31
Release date:2022-03-09
Method:ELECTRON MICROSCOPY (3.05 Å)
Cite:Cryo-EM structure of translesion DNA synthesis polymerase zeta with a base pair mismatch.
Nat Commun, 13, 2022
7SUF
DownloadVisualize
BU of 7suf by Molmil
Structure of CHK1 10-pt. mutant complex with LRRK2 inhibitor 06
Descriptor: 1,2-ETHANEDIOL, 8-cyclopropyl-N-[5-methyl-1-(oxan-4-yl)-1H-pyrazol-4-yl]quinazolin-2-amine, Serine/threonine-protein kinase Chk1
Authors:Palte, R.L.
Deposit date:2021-11-17
Release date:2022-01-12
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Structure-Guided Discovery of Aminoquinazolines as Brain-Penetrant and Selective LRRK2 Inhibitors.
J.Med.Chem., 65, 2022
7SUH
DownloadVisualize
BU of 7suh by Molmil
Structure of CHK1 10-pt. mutant complex with LRRK2 inhibitor 15
Descriptor: 1-[5-chloro-4-({6-chloro-7-[1-(oxetan-3-yl)piperidin-4-yl]quinazolin-2-yl}amino)-1H-pyrazol-1-yl]-2-methylpropan-2-ol, Serine/threonine-protein kinase Chk1
Authors:Palte, R.L.
Deposit date:2021-11-17
Release date:2022-01-12
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.46 Å)
Cite:Structure-Guided Discovery of Aminoquinazolines as Brain-Penetrant and Selective LRRK2 Inhibitors.
J.Med.Chem., 65, 2022
7SUG
DownloadVisualize
BU of 7sug by Molmil
Structure of CHK1 10-pt. mutant complex with LRRK2 inhibitor 09
Descriptor: 1,2-ETHANEDIOL, 1-(2-{[5-methyl-1-(oxan-4-yl)-1H-pyrazol-4-yl]amino}quinazolin-8-yl)cyclopropane-1-carbonitrile, Serine/threonine-protein kinase Chk1
Authors:Palte, R.L.
Deposit date:2021-11-17
Release date:2022-01-12
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Structure-Guided Discovery of Aminoquinazolines as Brain-Penetrant and Selective LRRK2 Inhibitors.
J.Med.Chem., 65, 2022
7SUJ
DownloadVisualize
BU of 7suj by Molmil
Structure of CHK1 10-pt. mutant complex with LRRK2 inhibitor 24
Descriptor: (3R,4R)-4-{4-[6-chloro-2-({1-[(1R)-2,2-difluorocyclopropyl]-5-methyl-1H-pyrazol-4-yl}amino)quinazolin-7-yl]piperidin-1-yl}-4-methyloxolan-3-ol, Serine/threonine-protein kinase Chk1
Authors:Palte, R.L.
Deposit date:2021-11-17
Release date:2022-01-12
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.299 Å)
Cite:Structure-Guided Discovery of Aminoquinazolines as Brain-Penetrant and Selective LRRK2 Inhibitors.
J.Med.Chem., 65, 2022
7SUI
DownloadVisualize
BU of 7sui by Molmil
Structure of CHK1 10-pt. mutant complex with LRRK2 inhibitor 22
Descriptor: (3R,4R)-4-{(3S,4S)-4-[6-chloro-2-({5-chloro-1-[(1R)-2,2-difluorocyclopropyl]-1H-pyrazol-4-yl}amino)quinazolin-7-yl]-3-fluoropiperidin-1-yl}oxolan-3-ol, Serine/threonine-protein kinase Chk1
Authors:Palte, R.L.
Deposit date:2021-11-17
Release date:2022-01-12
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.119 Å)
Cite:Structure-Guided Discovery of Aminoquinazolines as Brain-Penetrant and Selective LRRK2 Inhibitors.
J.Med.Chem., 65, 2022
6V93
DownloadVisualize
BU of 6v93 by Molmil
Structure of DNA Polymerase Zeta/DNA/dNTP Ternary Complex
Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA, ...
Authors:Malik, R, Kopylov, M, Jain, R, Ubarrextena-Belandia, I, Aggarwal, A.K.
Deposit date:2019-12-13
Release date:2020-08-19
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structure and mechanism of B-family DNA polymerase zeta specialized for translesion DNA synthesis.
Nat.Struct.Mol.Biol., 27, 2020
6V8P
DownloadVisualize
BU of 6v8p by Molmil
Structure of DNA Polymerase Zeta (Apo)
Descriptor: DNA polymerase delta small subunit, DNA polymerase delta subunit 3, DNA polymerase zeta catalytic subunit, ...
Authors:Malik, R, Gomez-Llorente, Y, Ubarretxena-Belandia, I, Aggarwal, A.K.
Deposit date:2019-12-11
Release date:2020-08-19
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Structure and mechanism of B-family DNA polymerase zeta specialized for translesion DNA synthesis.
Nat.Struct.Mol.Biol., 27, 2020
3OHB
DownloadVisualize
BU of 3ohb by Molmil
Yeast DNA polymerase eta extending from an 8-oxoG lesion
Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, 5'-D(*GP*TP*CP*CP*TP*CP*CP*CP*CP*TP*(DOC))-3', 5'-D(*TP*AP*AP*TP*GP*(8OG)P*AP*GP*GP*GP*GP*AP*GP*GP*AP*C)-3', ...
Authors:Silverstein, T.D, Jain, R, Aggarwal, A.K.
Deposit date:2010-08-17
Release date:2010-12-22
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis for error-free replication of oxidatively damaged DNA by yeast DNA polymerase eta.
Structure, 18, 2010
3OHA
DownloadVisualize
BU of 3oha by Molmil
Yeast DNA polymerase eta inserting dCTP opposite an 8oxoG lesion
Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, 5'-D(*GP*TP*CP*CP*TP*CP*CP*CP*CP*TP*(DOC))-3', 5'-D(P*TP*(8OG)P*GP*AP*GP*GP*GP*GP*AP*GP*GP*AP*C)-3', ...
Authors:Silverstein, T.D, Jain, R, Aggarwal, A.K.
Deposit date:2010-08-17
Release date:2010-12-22
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis for error-free replication of oxidatively damaged DNA by yeast DNA polymerase eta.
Structure, 18, 2010
3OSP
DownloadVisualize
BU of 3osp by Molmil
Structure of rev1
Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, 5'-D(*AP*TP*CP*CP*TP*CP*CP*CP*CP*TP*AP*(DOC))-3', 5'-D(*TP*AP*AP*(3DR)P*GP*TP*AP*GP*GP*GP*GP*AP*GP*GP*AP*T)-3', ...
Authors:Nair, D.T, Aggarwal, A.K.
Deposit date:2010-09-09
Release date:2011-04-13
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:DNA synthesis across an abasic lesion by yeast REV1 DNA polymerase.
J.Mol.Biol., 406, 2011
3G6V
DownloadVisualize
BU of 3g6v by Molmil
DNA synthesis across an abasic lesion by human DNA polymerase-iota
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, DNA polymerase iota, MAGNESIUM ION, ...
Authors:Nair, D.T, Aggarwal, A.K.
Deposit date:2009-02-09
Release date:2009-05-12
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:DNA Synthesis across an Abasic Lesion by Human DNA Polymerase iota
Structure, 17, 2009
3G6Y
DownloadVisualize
BU of 3g6y by Molmil
Ternary complex of DNA Polymerase iota:DNA:dTTP with an abasic site at the templating position
Descriptor: DNA polymerase iota, MAGNESIUM ION, Primer DNA strand, ...
Authors:Nair, D.T, Aggarwal, A.K.
Deposit date:2009-02-09
Release date:2009-05-12
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:DNA Synthesis across an Abasic Lesion by Human DNA Polymerase iota
Structure, 17, 2009
3G6X
DownloadVisualize
BU of 3g6x by Molmil
Ternary complex of DNA Polymerase iota:DNA:dGTP with an abasic site at the templating position
Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, DNA polymerase iota, MAGNESIUM ION, ...
Authors:Nair, D.T, Aggarwal, A.K.
Deposit date:2009-02-09
Release date:2009-05-12
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:DNA Synthesis across an Abasic Lesion by Human DNA Polymerase iota.
Structure, 17, 2009
3GQC
DownloadVisualize
BU of 3gqc by Molmil
Structure of human Rev1-DNA-dNTP ternary complex
Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, 5'-D(*AP*TP*CP*CP*TP*CP*CP*CP*CP*TP*AP*(DOC))-3', 5'-D(*TP*AP*AP*GP*GP*TP*AP*GP*GP*GP*GP*AP*GP*GP*AP*T)-3', ...
Authors:Swan, M.K, Aggarwal, A.K.
Deposit date:2009-03-24
Release date:2009-05-19
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of the human Rev1-DNA-dNTP ternary complex.
J.Mol.Biol., 390, 2009
3IN5
DownloadVisualize
BU of 3in5 by Molmil
Structure of human DNA polymerase kappa inserting dATP opposite an 8-oxoG DNA lesion
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, DNA (5'-D(*C*CP*TP*AP*(8OG)P*GP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'), DNA (5'-D(*GP*G*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*(DOC))-3'), ...
Authors:Silverstein, T.D, Vasquez-Del Carpio, R, Aggarwal, A.K.
Deposit date:2009-08-11
Release date:2009-09-08
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structure of human DNA polymerase kappa inserting dATP opposite an 8-oxoG DNA lesion
PLOS ONE, 4, 2009
3IAY
DownloadVisualize
BU of 3iay by Molmil
Ternary complex of DNA polymerase delta
Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, 5'-D(*AP*TP*CP*CP*TP*CP*CP*CP*CP*TP*AP*(DOC))-3', 5'-D(*TP*AP*AP*GP*GP*TP*AP*GP*GP*GP*GP*AP*GP*GP*AP*T)-3', ...
Authors:Swan, M.K, Aggarwal, A.K.
Deposit date:2009-07-15
Release date:2009-09-22
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis of high-fidelity DNA synthesis by yeast DNA polymerase delta
Nat.Struct.Mol.Biol., 16, 2009
7JK1
DownloadVisualize
BU of 7jk1 by Molmil
Human PrimPol inserting correct dCTP opposite the 8-oxoguanine lesion
Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, CALCIUM ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Rechkoblit, O, Aggarwal, A.K.
Deposit date:2020-07-27
Release date:2021-06-30
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.62 Å)
Cite:Structural basis of DNA synthesis opposite 8-oxoguanine by human PrimPol primase-polymerase.
Nat Commun, 12, 2021
7JKL
DownloadVisualize
BU of 7jkl by Molmil
Human PrimPol misinserting dATP opposite the 8-oxoguanine lesion (3'-end base of the primer strand is 2',3'-dideoxy-terminated).
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*GP*GP*GP*TP*GP*TP*GP*GP*TP*AP*GP*CP*(DDG))-3'), ...
Authors:Rechkoblit, O, Aggarwal, A.K.
Deposit date:2020-07-28
Release date:2021-06-30
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.384 Å)
Cite:Structural basis of DNA synthesis opposite 8-oxoguanine by human PrimPol primase-polymerase.
Nat Commun, 12, 2021
7JL8
DownloadVisualize
BU of 7jl8 by Molmil
Human PrimPol extending from the correct primer base C opposite the 8-oxoguanine lesion
Descriptor: 1,2-ETHANEDIOL, 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, ...
Authors:Rechkoblit, O, Aggarwal, A.K.
Deposit date:2020-07-29
Release date:2021-06-30
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis of DNA synthesis opposite 8-oxoguanine by human PrimPol primase-polymerase.
Nat Commun, 12, 2021
7JLG
DownloadVisualize
BU of 7jlg by Molmil
Human PrimPol extending from the erroneous primer base A opposite the 8-oxoguanine lesion
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Rechkoblit, O, Aggarwal, A.K.
Deposit date:2020-07-29
Release date:2021-06-30
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Structural basis of DNA synthesis opposite 8-oxoguanine by human PrimPol primase-polymerase.
Nat Commun, 12, 2021

220113

数据于2024-05-22公开中

PDB statisticsPDBj update infoContact PDBjnumon