Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
4QP0
DownloadVisualize
BU of 4qp0 by Molmil
Crystal Structure Analysis of the Endo-1,4-beta-mannanase from Rhizomucor miehei
Descriptor: Endo-beta-mannanase, SULFATE ION
Authors:Zheng, Q.J, Peng, Z, Liu, Y, Yan, Q.J, Chen, Z.Z, Qin, Z.
Deposit date:2014-06-22
Release date:2014-11-05
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural insights into the substrate specificity and transglycosylation activity of a fungal glycoside hydrolase family 5 beta-mannosidase.
Acta Crystallogr.,Sect.D, 70, 2014
3O5X
DownloadVisualize
BU of 3o5x by Molmil
Crystal structure of the oncogenic tyrosine phosphatase SHP2 complexed with a salicylic acid-based small molecule inhibitor
Descriptor: 3-{1-[3-(biphenyl-4-ylamino)-3-oxopropyl]-1H-1,2,3-triazol-4-yl}-6-hydroxy-1-methyl-2-phenyl-1H-indole-5-carboxylic acid, Tyrosine-protein phosphatase non-receptor type 11
Authors:Zhang, Z.-Y, Zhang, X, He, Y, Liu, S, Yu, Z, Jiang, Z, Yang, Z, Dong, Y, Nabinger, S.C, Wu, L, Gunawan, A.M, Wang, L, Chan, R.J.
Deposit date:2010-07-28
Release date:2010-08-11
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Salicylic acid based small molecule inhibitor for the oncogenic Src homology-2 domain containing protein tyrosine phosphatase-2 (SHP2).
J.Med.Chem., 53, 2010
4LYR
DownloadVisualize
BU of 4lyr by Molmil
Glycoside Hydrolase Family 5 Mannosidase from Rhizomucor miehei, E301A mutant
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Exo-beta-1,4-mannosidase
Authors:Jiang, Z.Q, Zhou, P, Yang, S.Q, Liu, Y, Yan, Q.J.
Deposit date:2013-07-31
Release date:2014-08-06
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural insights into the substrate specificity and transglycosylation activity of a fungal glycoside hydrolase family 5 beta-mannosidase.
Acta Crystallogr.,Sect.D, 70, 2014
4LYQ
DownloadVisualize
BU of 4lyq by Molmil
Crystal Structure of Glycoside Hydrolase Family 5 Mannosidase from Rhizomucor miehei, E202A mutant
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Exo-beta-1,4-mannosidase, ...
Authors:Jiang, Z.Q, Zhou, P, Yang, S.Q, Liu, Y, Yan, Q.J.
Deposit date:2013-07-31
Release date:2014-08-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural insights into the substrate specificity and transglycosylation activity of a fungal glycoside hydrolase family 5 beta-mannosidase.
Acta Crystallogr.,Sect.D, 70, 2014
4LYP
DownloadVisualize
BU of 4lyp by Molmil
Crystal Structure of Glycoside Hydrolase Family 5 Mannosidase from Rhizomucor miehei
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Exo-beta-1,4-mannosidase, GUANIDINE
Authors:Jiang, Z.Q, Zhou, P, Yang, S.Q, Liu, Y, Yan, Q.J.
Deposit date:2013-07-31
Release date:2014-08-06
Last modified:2014-11-26
Method:X-RAY DIFFRACTION (1.28 Å)
Cite:Structural insights into the substrate specificity and transglycosylation activity of a fungal glycoside hydrolase family 5 beta-mannosidase.
Acta Crystallogr.,Sect.D, 70, 2014
4NRS
DownloadVisualize
BU of 4nrs by Molmil
Crystal Structure of Glycoside Hydrolase Family 5 Mannosidase (E202A mutant) from Rhizomucor miehei in complex with mannobiose
Descriptor: Exo-beta-1,4-mannosidase, beta-D-mannopyranose-(1-4)-alpha-D-mannopyranose
Authors:Jiang, Z.Q, Zhou, P, Yang, S.Q, Liu, Y, Yan, Q.J.
Deposit date:2013-11-27
Release date:2014-11-19
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.57 Å)
Cite:Structural insights into the substrate specificity and transglycosylation activity of a fungal glycoside hydrolase family 5 beta-mannosidase.
Acta Crystallogr.,Sect.D, 70, 2014
4NRR
DownloadVisualize
BU of 4nrr by Molmil
Crystal Structure of Glycoside Hydrolase Family 5 Mannosidase (E202A mutant) from Rhizomucor miehei in complex with mannosyl-fructose
Descriptor: Exo-beta-1,4-mannosidase, beta-D-mannopyranose-(1-4)-beta-D-fructofuranose
Authors:Jiang, Z.Q, Zhou, P, Yang, S.Q, Liu, Y, Yan, Q.J.
Deposit date:2013-11-27
Release date:2014-11-19
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural insights into the substrate specificity and transglycosylation activity of a fungal glycoside hydrolase family 5 beta-mannosidase.
Acta Crystallogr.,Sect.D, 70, 2014
8WIU
DownloadVisualize
BU of 8wiu by Molmil
Bromodomain and Extra-terminal Domain (BET) BRD4
Descriptor: 7-[5-[1-(cyclopropylmethyl)-3,5-dimethyl-pyrazol-4-yl]pyridin-3-yl]-1~{H}-imidazo[4,5-b]pyridine, Isoform C of Bromodomain-containing protein 4
Authors:Cao, D, Zhiyan, D, Xiong, B.
Deposit date:2023-09-25
Release date:2024-01-03
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Discovery of a brain-permeable bromodomain and extra terminal domain (BET) inhibitor with selectivity for BD1 for the treatment of multiple sclerosis.
Eur.J.Med.Chem., 265, 2023
8TBQ
DownloadVisualize
BU of 8tbq by Molmil
The crystal structure of human VISTA extra cellular domain in complex with Fab fragment of pH-selective anti-VISTA antibody
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, SNS-101 Fab heavy chain, ...
Authors:van der Horst, E.H, Mukherjee, A, Thisted, T.
Deposit date:2023-06-29
Release date:2024-03-20
Method:X-RAY DIFFRACTION (2.593 Å)
Cite:The pH-selective anti-VISTA antibody SNS-101 displays a favorable pharmacokinetic and safety profile and promotes anti-tumoral M1 macrophage polarization in PD-1 refractory settings
To Be Published
8H7L
DownloadVisualize
BU of 8h7l by Molmil
Cryo-EM Structure of SARS-CoV-2 BA.2 Spike protein in complex with BA7535
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, BA7535 fab heavt chain, ...
Authors:Liu, Z, Yan, A, Gao, Y.
Deposit date:2022-10-20
Release date:2023-08-30
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (2.44 Å)
Cite:Identification of a highly conserved neutralizing epitope within the RBD region of diverse SARS-CoV-2 variants.
Nat Commun, 15, 2024
8H7Z
DownloadVisualize
BU of 8h7z by Molmil
Cryo-EM structure of SARS-CoV-2 BA.2 RBD in complex with BA7535 fab (local refinement)
Descriptor: BA7535 fab, Spike glycoprotein
Authors:Liu, Z, Yan, A, Gao, Y.
Deposit date:2022-10-21
Release date:2023-08-30
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.07 Å)
Cite:Identification of a highly conserved neutralizing epitope within the RBD region of diverse SARS-CoV-2 variants.
Nat Commun, 15, 2024
3RN2
DownloadVisualize
BU of 3rn2 by Molmil
Structural Basis of Cytosolic DNA Recognition by Innate Immune Receptors
Descriptor: 1,2-ETHANEDIOL, DNA (5'-D(*CP*CP*AP*TP*CP*AP*AP*AP*GP*AP*TP*CP*TP*TP*TP*GP*AP*TP*GP*G)-3'), Interferon-inducible protein AIM2
Authors:Jin, T.C, Xiao, T.
Deposit date:2011-04-21
Release date:2012-04-25
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Structures of the HIN Domain:DNA Complexes Reveal Ligand Binding and Activation Mechanisms of the AIM2 Inflammasome and IFI16 Receptor.
Immunity, 36, 2012
3RLN
DownloadVisualize
BU of 3rln by Molmil
Structural Basis of Cytosolic DNA Recognition by Innate Immune Receptors
Descriptor: Gamma-interferon-inducible protein 16
Authors:Jin, T.C, Xiao, T.
Deposit date:2011-04-19
Release date:2012-04-25
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.251 Å)
Cite:Structures of the HIN Domain:DNA Complexes Reveal Ligand Binding and Activation Mechanisms of the AIM2 Inflammasome and IFI16 Receptor.
Immunity, 36, 2012
3RLO
DownloadVisualize
BU of 3rlo by Molmil
Structural Basis of Cytosolic DNA Recognition by Innate Receptors
Descriptor: 1,2-ETHANEDIOL, FORMIC ACID, Gamma-interferon-inducible protein 16
Authors:Jin, T.C, Xiao, T.
Deposit date:2011-04-19
Release date:2012-04-25
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structures of the HIN Domain:DNA Complexes Reveal Ligand Binding and Activation Mechanisms of the AIM2 Inflammasome and IFI16 Receptor.
Immunity, 36, 2012
7RMQ
DownloadVisualize
BU of 7rmq by Molmil
Crystal structure of cycloviolacin O2
Descriptor: Cycloviolacin O2, D-[I11L]cycloviolacin O2, FORMIC ACID
Authors:Huang, Y.H, Du, Q.
Deposit date:2021-07-28
Release date:2021-09-22
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.17 Å)
Cite:Enabling Efficient Folding and High-Resolution Crystallographic Analysis of Bracelet Cyclotides.
Molecules, 26, 2021
7RMS
DownloadVisualize
BU of 7rms by Molmil
Crystal structure of [I11G]cycloviolacin O2
Descriptor: D-[I11L]cycloviolacin O2, THIOCYANATE ION, [I11L]cycloviolacin O2
Authors:Huang, Y.H, Du, Q, Craik, D.J.
Deposit date:2021-07-28
Release date:2021-09-22
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Enabling Efficient Folding and High-Resolution Crystallographic Analysis of Bracelet Cyclotides.
Molecules, 26, 2021
7RMR
DownloadVisualize
BU of 7rmr by Molmil
Crystal structure of [I11L]cycloviolacin O2
Descriptor: D-[I11L]cycloviolacin O2, THIOCYANATE ION, [I11L]cycloviolacin O2
Authors:Huang, Y.H, Du, Q, Craik, D.J.
Deposit date:2021-07-28
Release date:2021-09-22
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.04 Å)
Cite:Enabling Efficient Folding and High-Resolution Crystallographic Analysis of Bracelet Cyclotides.
Molecules, 26, 2021
7SQI
DownloadVisualize
BU of 7sqi by Molmil
Crosslinked Crystal Structure of Type II Fatty Acid Synthase Ketosynthase, FabB, and C14-crypto Acyl Carrier Protein, AcpP
Descriptor: Acyl carrier protein, Beta-ketoacyl-ACP synthase I, N-{2-[(2Z)-3-chlorotetradec-2-enamido]ethyl}-N~3~-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alaninamide, ...
Authors:Chen, A, Mindrebo, J.T, Davis, T.D, Noel, J.P, Burkart, M.D.
Deposit date:2021-11-05
Release date:2022-08-03
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Mechanism-based cross-linking probes capture the Escherichia coli ketosynthase FabB in conformationally distinct catalytic states.
Acta Crystallogr D Struct Biol, 78, 2022
5C3U
DownloadVisualize
BU of 5c3u by Molmil
Crystal structure of a fungal L-serine ammonia-lyase from Rhizomucor miehei
Descriptor: L-serine ammonia-lyase, PYRIDOXAL-5'-PHOSPHATE
Authors:Zhen, Q, Qiaojuan, Y, Shaoqing, Y, Zhengqiang, J.
Deposit date:2015-06-17
Release date:2015-12-09
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Crystal structure and characterization of a novel l-serine ammonia-lyase from Rhizomucor miehei.
Biochem.Biophys.Res.Commun., 466, 2015
3RN5
DownloadVisualize
BU of 3rn5 by Molmil
Structural basis of cytosolic DNA recognition by innate immune receptors
Descriptor: 1,2-ETHANEDIOL, DNA (5'-D(*CP*CP*AP*TP*CP*AP*AP*AP*GP*AP*GP*AP*GP*AP*AP*AP*GP*AP*G)-3'), DNA (5'-D(*GP*CP*TP*CP*TP*TP*TP*CP*TP*CP*TP*CP*TP*TP*TP*GP*AP*TP*G)-3'), ...
Authors:Jin, T.C, Xiao, T.
Deposit date:2011-04-21
Release date:2012-04-25
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structures of the HIN Domain:DNA Complexes Reveal Ligand Binding and Activation Mechanisms of the AIM2 Inflammasome and IFI16 Receptor.
Immunity, 36, 2012
3RNU
DownloadVisualize
BU of 3rnu by Molmil
Structural Basis of Cytosolic DNA Sensing by Innate Immune Receptors
Descriptor: 1,2-ETHANEDIOL, DNA (5'-D(*GP*CP*CP*AP*TP*CP*AP*AP*AP*GP*AP*GP*AP*GP*AP*G)-3'), DNA (5'-D(*TP*CP*TP*CP*TP*CP*TP*TP*TP*GP*AP*TP*GP*GP*CP*C)-3'), ...
Authors:Jin, T.C, Xiao, T.
Deposit date:2011-04-22
Release date:2012-04-25
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.502 Å)
Cite:Structures of the HIN Domain:DNA Complexes Reveal Ligand Binding and Activation Mechanisms of the AIM2 Inflammasome and IFI16 Receptor.
Immunity, 36, 2012
7VGB
DownloadVisualize
BU of 7vgb by Molmil
Crystal structure of apo prolyl oligopeptidase from Microbulbifer arenaceous
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Huang, P, Jiang, Z.Q.
Deposit date:2021-09-15
Release date:2022-05-25
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.227 Å)
Cite:The structure and molecular dynamics of prolyl oligopeptidase from Microbulbifer arenaceous provide insights into catalytic and regulatory mechanisms.
Acta Crystallogr D Struct Biol, 78, 2022
7VGC
DownloadVisualize
BU of 7vgc by Molmil
Crystal structure of prolyl oligopeptidase from Microbulbifer arenaceous complex with a transition state analog inhibitor ZPR
Descriptor: CHLORIDE ION, N-BENZYLOXYCARBONYL-L-PROLYL-L-PROLINAL, prolyl oligopeptidase
Authors:Huang, P, Yang, S.Q, Jiang, Z.Q.
Deposit date:2021-09-15
Release date:2022-05-25
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.722 Å)
Cite:The structure and molecular dynamics of prolyl oligopeptidase from Microbulbifer arenaceous provide insights into catalytic and regulatory mechanisms.
Acta Crystallogr D Struct Biol, 78, 2022
8H8I
DownloadVisualize
BU of 8h8i by Molmil
Triterpenoid saponin acetyltransferase, AmAT7-3
Descriptor: AmAT7-3, Astragaloside IV
Authors:Wang, L.L.
Deposit date:2022-10-22
Release date:2023-09-13
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Characterization and structure-based protein engineering of a regiospecific saponin acetyltransferase from Astragalus membranaceus.
Nat Commun, 14, 2023
8HBT
DownloadVisualize
BU of 8hbt by Molmil
AmAT7-3 mutant A310G
Descriptor: AmAT7-3-A310G, Astragaloside IV
Authors:Wang, L.L.
Deposit date:2022-10-31
Release date:2023-09-13
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Characterization and structure-based protein engineering of a regiospecific saponin acetyltransferase from Astragalus membranaceus.
Nat Commun, 14, 2023

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon