Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
1L2Z
DownloadVisualize
BU of 1l2z by Molmil
CD2BP2-GYF domain in complex with proline-rich CD2 tail segment peptide
Descriptor: CD2 ANTIGEN (CYTOPLASMIC TAIL)-BINDING PROTEIN 2, T-CELL SURFACE ANTIGEN CD2
Authors:Freund, C, Kuhne, R, Yang, H, Park, S, Reinherz, E.L, Wagner, G.
Deposit date:2002-02-26
Release date:2002-11-20
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Dynamic interaction of CD2 with the GYF and the SH3 domain of compartmentalized effector molecules
Embo J., 21, 2002
1GYF
DownloadVisualize
BU of 1gyf by Molmil
GYF DOMAIN FROM HUMAN CD2BP2 PROTEIN
Descriptor: PROTEIN (CYTOPLASMIC DOMAIN BINDING PROTEIN (CD2BP2))
Authors:Freund, C, Doetsch, V, Nishizawa, K, Reinherz, E.L, Wagner, G.
Deposit date:1999-04-30
Release date:2000-01-05
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:The GYF domain is a novel structural fold that is involved in lymphoid signaling through proline-rich sequences.
Nat.Struct.Biol., 6, 1999
2GTO
DownloadVisualize
BU of 2gto by Molmil
Oxidized form of ADAP hSH3-N
Descriptor: FYN-binding protein
Authors:Freund, C, Zimmermann, J, Kuehne, R.
Deposit date:2006-04-28
Release date:2007-06-05
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:Redox-Regulated Conformational Changes in an SH3 Domain
Biochemistry, 46, 2007
7YXB
DownloadVisualize
BU of 7yxb by Molmil
MHC-II dynamics are maintained in HLA-DR allotypes to ensure catalyzed peptide exchange
Descriptor: 1,2-ETHANEDIOL, CITRATE ANION, CLIP peptide, ...
Authors:Roske, Y, Abualrous, E.T, Freund, C.
Deposit date:2022-02-15
Release date:2023-02-22
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.095 Å)
Cite:MHC-II dynamics are maintained in HLA-DR allotypes to ensure catalyzed peptide exchange.
Nat.Chem.Biol., 19, 2023
7Z0Q
DownloadVisualize
BU of 7z0q by Molmil
MHC-II dynamics are maintained in HLA-DR allotypes to ensure catalyzed peptide exchange
Descriptor: 1,2-ETHANEDIOL, CLIP peptide, HLA class II histocompatibility antigen, ...
Authors:Roske, Y, Abualrous, E.T, Freund, C.
Deposit date:2022-02-23
Release date:2023-03-08
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:MHC-II dynamics are maintained in HLA-DR allotypes to ensure catalyzed peptide exchange.
Nat.Chem.Biol., 19, 2023
2GTJ
DownloadVisualize
BU of 2gtj by Molmil
Reduced form of ADAP hSH3-N-domain
Descriptor: FYN-binding protein
Authors:Zimmermann, J, Kuehne, R, Freund, C.
Deposit date:2006-04-28
Release date:2007-06-05
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Redox-Regulated Conformational Changes in an SH3 Domain
Biochemistry, 46, 2007
4X5X
DownloadVisualize
BU of 4x5x by Molmil
HLA-DR1 mutant bN82A with covalently linked CLIP106-120(M107W)
Descriptor: HLA class II histocompatibility antigen, DR alpha chain, DRB1-1 beta chain
Authors:Guenther, S, Freund, C.
Deposit date:2014-12-06
Release date:2016-03-09
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (3.199 Å)
Cite:MHC class II complexes sample intermediate states along the peptide exchange pathway.
Nat Commun, 7, 2016
4X5W
DownloadVisualize
BU of 4x5w by Molmil
HLA-DR1 with CLIP102-120(M107W)
Descriptor: HLA class II histocompatibility antigen gamma chain, HLA class II histocompatibility antigen, DR alpha chain, ...
Authors:Guenther, S, Freund, C.
Deposit date:2014-12-06
Release date:2016-03-09
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.34 Å)
Cite:MHC class II complexes sample intermediate states along the peptide exchange pathway.
Nat Commun, 7, 2016
1RI9
DownloadVisualize
BU of 1ri9 by Molmil
Structure of a helically extended SH3 domain of the T cell adapter protein ADAP
Descriptor: FYN-binding protein
Authors:Heuer, K, Kofler, M, Langdon, G, Thiemke, K, Freund, C.
Deposit date:2003-11-17
Release date:2004-04-20
Last modified:2024-05-08
Method:SOLUTION NMR
Cite:Structure of a Helically Extended SH3 Domain of the T Cell Adapter Protein ADAP.
STRUCTURE, 12, 2004
7ALO
DownloadVisualize
BU of 7alo by Molmil
Structure of B*27:09/photoRL9
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Beta-2-microglobulin, DI(HYDROXYETHYL)ETHER, ...
Authors:Loll, B, Lan, H, Freund, C.
Deposit date:2020-10-07
Release date:2021-06-16
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Exchange catalysis by tapasin exploits conserved and allele-specific features of MHC-I molecules.
Nat Commun, 12, 2021
3PGC
DownloadVisualize
BU of 3pgc by Molmil
Crystal Structure of HLA-DR1 with CLIP106-120, flipped peptide orientation
Descriptor: DI(HYDROXYETHYL)ETHER, GLYCEROL, HLA class II histocompatibility antigen gamma chain, ...
Authors:Gunther, S, Schlundt, A, Sticht, J, Roske, Y, Heinemann, U, Wiesmuller, K.-H, Jung, G, Falk, K, Rotzschke, O, Freund, C.
Deposit date:2010-11-01
Release date:2010-12-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.66 Å)
Cite:Bidirectional binding of invariant chain peptides to an MHC class II molecule.
Proc.Natl.Acad.Sci.USA, 107, 2010
3PGD
DownloadVisualize
BU of 3pgd by Molmil
Crystal Structure of HLA-DR1 with CLIP106-120, canonical peptide orientation
Descriptor: HLA class II histocompatibility antigen gamma chain, HLA class II histocompatibility antigen, DR alpha chain, ...
Authors:Gunther, S, Schlundt, A, Sticht, J, Roske, Y, Heinemann, U, Wiesmuller, K.-H, Jung, G, Falk, K, Rotzschke, O, Freund, C.
Deposit date:2010-11-01
Release date:2010-12-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.72 Å)
Cite:Bidirectional binding of invariant chain peptides to an MHC class II molecule.
Proc.Natl.Acad.Sci.USA, 107, 2010
3PDO
DownloadVisualize
BU of 3pdo by Molmil
Crystal Structure of HLA-DR1 with CLIP102-120
Descriptor: FORMIC ACID, GLYCEROL, HLA class II histocompatibility antigen gamma chain, ...
Authors:Gunther, S, Schlundt, A, Sticht, J, Roske, Y, Heinemann, U, Wiesmuller, K.-H, Jung, G, Falk, K, Rotzschke, O, Freund, C.
Deposit date:2010-10-23
Release date:2010-12-08
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Bidirectional binding of invariant chain peptides to an MHC class II molecule.
Proc.Natl.Acad.Sci.USA, 107, 2010
7PX3
DownloadVisualize
BU of 7px3 by Molmil
Structure of U5 snRNP assembly and recycling factor TSSC4 in complex with BRR2 and Jab1 domain of PRPF8
Descriptor: Pre-mRNA-processing-splicing factor 8, Protein TSSC4, U5 small nuclear ribonucleoprotein 200 kDa helicase
Authors:Bergfort, A, Kuropka, B, Ilik, I.A, Freund, C, Aktas, T, Hilal, T, Weber, G, Wahl, M.C.
Deposit date:2021-10-07
Release date:2022-01-26
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3.05 Å)
Cite:The intrinsically disordered TSSC4 protein acts as a helicase inhibitor, placeholder and multi-interaction coordinator during snRNP assembly and recycling.
Nucleic Acids Res., 50, 2022
6H5T
DownloadVisualize
BU of 6h5t by Molmil
Intersectin SH3A short isoform
Descriptor: 2,5,8,11,14,17,20,23-OCTAOXAPENTACOSAN-25-OL, ACETATE ION, CHLORIDE ION, ...
Authors:Driller, J.H, Gerth, F, Freund, C, Wahl, M.C, Loll, B.
Deposit date:2018-07-25
Release date:2019-02-27
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.689 Å)
Cite:Exon Inclusion Modulates Conformational Plasticity and Autoinhibition of the Intersectin 1 SH3A Domain.
Structure, 27, 2019
4AEN
DownloadVisualize
BU of 4aen by Molmil
HLA-DR1 with covalently linked CLIP106-120 in reversed orientation
Descriptor: GLYCEROL, HLA CLASS II HISTOCOMPATIBILITY ANTIGEN GAMMA CHAIN, HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, ...
Authors:Schlundt, A, Guenther, S, Sticht, J, Wieczorek, M, Roske, Y, Heinemann, U, Freund, C.
Deposit date:2012-01-11
Release date:2012-08-01
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Peptide Linkage to the Alpha-Subunit of Mhcii Creates a Stably Inverted Antigen Presentation Complex.
J.Mol.Biol., 423, 2012
4AH2
DownloadVisualize
BU of 4ah2 by Molmil
HLA-DR1 with covalently linked CLIP106-120 in canonical orientation
Descriptor: GLYCEROL, HLA CLASS II HISTOCOMPATIBILITY ANTIGEN GAMMA CHAIN, HLA CLASS II HISTOCOMPATIBILITY ANTIGEN,DRB1-1 BETA CHAIN, ...
Authors:Schlundt, A, Guenther, S, Sticht, J, Wieczorek, M, Roske, Y, Heinemann, U, Freund, C.
Deposit date:2012-02-03
Release date:2012-08-01
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.36 Å)
Cite:Peptide Linkage to the Alpha-Subunit of Mhcii Creates a Stably Inverted Antigen Presentation Complex.
J.Mol.Biol., 423, 2012
8FRT
DownloadVisualize
BU of 8frt by Molmil
X-ray crystal structure of the N-terminal region from HCMV US11 binding to HLA-A*02:01
Descriptor: GLYCEROL, Unique short US11 glycoprotein, Beta-2-microglobulin, ...
Authors:Watson, G.M, Berry, R, Rossjohn, J.
Deposit date:2023-01-08
Release date:2024-03-27
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Diverse cytomegalovirus US11 antagonism and MHC-A evasion strategies reveal a tit-for-tat coevolutionary arms race in hominids.
Proc.Natl.Acad.Sci.USA, 121, 2024
8FU4
DownloadVisualize
BU of 8fu4 by Molmil
HCMV US11 peptide binding to HLA-A*02:01
Descriptor: Beta-2-microglobulin, CADMIUM ION, GLYCEROL, ...
Authors:Watson, G.M, Berry, R, Littler, D.R, Rossjohn, J.
Deposit date:2023-01-16
Release date:2024-03-27
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Diverse cytomegalovirus US11 antagonism and MHC-A evasion strategies reveal a tit-for-tat coevolutionary arms race in hominids.
Proc.Natl.Acad.Sci.USA, 121, 2024
7YX9
DownloadVisualize
BU of 7yx9 by Molmil
MHC-II dynamics are maintained in HLA-DR allotypes to ensure catalyzed peptide exchange
Descriptor: 1,2-ETHANEDIOL, CLIP 103-107, HLA class II histocompatibility antigen, ...
Authors:Roske, Y, Abualrous, E.T.
Deposit date:2022-02-15
Release date:2023-02-22
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:MHC-II dynamics are maintained in HLA-DR allotypes to ensure catalyzed peptide exchange.
Nat.Chem.Biol., 19, 2023
3K3V
DownloadVisualize
BU of 3k3v by Molmil
Crystal structure the GYF domain of S. Cerevisiae SMY2
Descriptor: Protein SMY2
Authors:Ash, M.R, Faelber, K.
Deposit date:2009-10-05
Release date:2010-05-19
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:SMY2-type GYF domain recognition in mRNA surveillance complexes
To be Published
3FMA
DownloadVisualize
BU of 3fma by Molmil
Crystal structure of the GYF domain of Smy2 in complex with a proline-rich peptide from BBP/ScSF1
Descriptor: Branchpoint-bridging protein, Protein SMY2
Authors:Ash, M.R, Faelber, K.
Deposit date:2008-12-19
Release date:2009-12-22
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:SMY2-type GYF domain recognition in mRNA surveillance complexes
to be published
4MY6
DownloadVisualize
BU of 4my6 by Molmil
EnaH-EVH1 in complex with peptidomimetic low-molecular weight inhibitor Ac-[2-Cl-F]-[ProM-2]-[ProM-1]-OH
Descriptor: (3aR,5aS,8S,10aS)-1-[(3S,6R,8aS)-1'-[(2S)-2-acetamido-3-(2-chlorophenyl)propanoyl]-5-oxidanylidene-spiro[1,2,3,8a-tetrahydroindolizine-6,2'-pyrrolidine]-3-yl]carbonyl-10-oxidanylidene-2,3,3a,5a,8,10a-hexahydrodipyrrolo[3,2-b:3',1'-f]azepine-8-carboxylic acid, BROMIDE ION, Protein enabled homolog
Authors:Barone, M, Roske, Y, Kuehne, R.
Deposit date:2013-09-27
Release date:2014-10-15
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:A modular toolkit to inhibit proline-rich motif-mediated protein-protein interactions.
Proc.Natl.Acad.Sci.USA, 112, 2015
6Q9M
DownloadVisualize
BU of 6q9m by Molmil
Central Fibronectin-III array of RIM-binding protein
Descriptor: PHOSPHATE ION, RIM-binding protein, isoform F
Authors:Driller, J.D, Habibi, S, Wahl, M.C, Loll, B.
Deposit date:2018-12-18
Release date:2020-01-15
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.453 Å)
Cite:RIM-binding protein couples synaptic vesicle recruitment to release sites.
J.Cell Biol., 219, 2020
4OV5
DownloadVisualize
BU of 4ov5 by Molmil
Structure of HLA-DR1 with a bound peptide with non-optimal alanine in the P1 pocket
Descriptor: HLA class I histocompatibility antigen, A-2 alpha chain, HLA class II histocompatibility antigen, ...
Authors:Trenh, P, Yin, L, Stern, L.J.
Deposit date:2014-02-20
Release date:2014-07-16
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.199 Å)
Cite:Susceptibility to HLA-DM Protein Is Determined by a Dynamic Conformation of Major Histocompatibility Complex Class II Molecule Bound with Peptide.
J.Biol.Chem., 289, 2014

 

12>

226707

PDB entries from 2024-10-30

PDB statisticsPDBj update infoContact PDBjnumon