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5NEU
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BU of 5neu by Molmil
Localised Reconstruction of Integrin alpha V beta 6 bound to Foot and Mouth Disease Virus O1 Manisa - Pose B.
Descriptor: CALCIUM ION, Capsid protein, Integrin alpha-V, ...
Authors:Kotecha, A, Stuart, D.
Deposit date:2017-03-11
Release date:2017-06-21
Last modified:2018-03-28
Method:ELECTRON MICROSCOPY (12.3 Å)
Cite:Rules of engagement between alpha v beta 6 integrin and foot-and-mouth disease virus.
Nat Commun, 8, 2017
5NE4
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BU of 5ne4 by Molmil
Crystal Structure of Foot and Mouth Disease Virus O PanAsia
Descriptor: O PanAsia VP1, O PanAsia VP2, O PanAsia VP4, ...
Authors:Kotecha, A, StuarT, D.
Deposit date:2017-03-09
Release date:2017-06-14
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Rules of engagement between alpha v beta 6 integrin and foot-and-mouth disease virus.
Nat Commun, 8, 2017
5NED
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BU of 5ned by Molmil
CryoEM Structure of Foot and Mouth Disease Virus O PanAsia
Descriptor: O PanAsia VP1, O PanAsia VP2, O PanAsia VP3, ...
Authors:Kotecha, A, Stuart, D.
Deposit date:2017-03-10
Release date:2017-06-21
Last modified:2019-12-11
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Rules of engagement between alpha v beta 6 integrin and foot-and-mouth disease virus.
Nat Commun, 8, 2017
3E9G
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BU of 3e9g by Molmil
Crystal structure long-form (residue1-124) of Eaf3 chromo domain
Descriptor: Chromatin modification-related protein EAF3
Authors:Sun, B, Hong, J, Zhang, P, Lin, D, Ding, J.
Deposit date:2008-08-22
Release date:2008-11-04
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Molecular Basis of the Interaction of Saccharomyces cerevisiae Eaf3 Chromo Domain with Methylated H3K36
J.Biol.Chem., 283, 2008
3E9F
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BU of 3e9f by Molmil
Crystal structure short-form (residue1-113) of Eaf3 chromo domain
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Chromatin modification-related protein EAF3
Authors:Sun, B, Hong, J, Zhang, P, Lin, D, Ding, J.
Deposit date:2008-08-22
Release date:2008-11-04
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Molecular Basis of the Interaction of Saccharomyces cerevisiae Eaf3 Chromo Domain with Methylated H3K36
J.Biol.Chem., 283, 2008
2QUJ
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BU of 2quj by Molmil
Crystal structures of human tryptophanyl-tRNA synthetase in complex with TrpAMP
Descriptor: CHLORIDE ION, GLYCEROL, TRYPTOPHAN, ...
Authors:Shen, N, Ding, J.P.
Deposit date:2007-08-05
Release date:2008-04-29
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.42 Å)
Cite:Catalytic mechanism of the tryptophan activation reaction revealed by crystal structures of human tryptophanyl-tRNA synthetase in different enzymatic states
Nucleic Acids Res., 36, 2008
2QUH
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BU of 2quh by Molmil
Crystal structures of human tryptophanyl-tRNA synthetase in complex with Trp
Descriptor: TRYPTOPHAN, Tryptophanyl-tRNA synthetase
Authors:Shen, N, Ding, J.P.
Deposit date:2007-08-05
Release date:2008-04-29
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Catalytic mechanism of the tryptophan activation reaction revealed by crystal structures of human tryptophanyl-tRNA synthetase in different enzymatic states
Nucleic Acids Res., 36, 2008
2QUI
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BU of 2qui by Molmil
Crystal structures of human tryptophanyl-tRNA synthetase in complex with Tryptophanamide and ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, L-TRYPTOPHANAMIDE, MAGNESIUM ION, ...
Authors:Shen, N, Ding, J.P.
Deposit date:2007-08-05
Release date:2008-04-29
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Catalytic mechanism of the tryptophan activation reaction revealed by crystal structures of human tryptophanyl-tRNA synthetase in different enzymatic states
Nucleic Acids Res., 36, 2008
5NER
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BU of 5ner by Molmil
Localised reconstruction of alpha v beta 6 bound to Foot and Mouth Disease Virus O PanAsia - Pose A prime.
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Integrin alpha-V, ...
Authors:Kotecha, A, Stuart, D.
Deposit date:2017-03-11
Release date:2017-06-21
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (11.5 Å)
Cite:Rules of engagement between alpha v beta 6 integrin and foot-and-mouth disease virus.
Nat Commun, 8, 2017
5NEM
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BU of 5nem by Molmil
Localised reconstruction of alpha v beta 6 bound to Foot and Mouth Disease Virus O PanAsia - Pose A.
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Integrin alpha-V, ...
Authors:Kotecha, A, Stuart, D.
Deposit date:2017-03-10
Release date:2017-06-21
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (10.8 Å)
Cite:Rules of engagement between alpha v beta 6 integrin and foot-and-mouth disease virus.
Nat Commun, 8, 2017
5NEJ
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BU of 5nej by Molmil
CryoEM Structure of Foot and Mouth Disease Virus O1 Manisa
Descriptor: O1 Manisa VP1, O1 Manisa VP2, O1 Manisa VP3
Authors:Kotecha, A, Stuart, D.
Deposit date:2017-03-10
Release date:2017-06-21
Last modified:2017-08-02
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Rules of engagement between alpha v beta 6 integrin and foot-and-mouth disease virus.
Nat Commun, 8, 2017
5NET
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BU of 5net by Molmil
Localised Reconstruction of Integrin alpha V beta 6 bound to Foot and Mouth Disease Virus O1 Manisa - Pose A.
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Integrin alpha-V, ...
Authors:Kotecha, A, Stuart, D.
Deposit date:2017-03-11
Release date:2017-06-21
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (8.6 Å)
Cite:Rules of engagement between alpha v beta 6 integrin and foot-and-mouth disease virus.
Nat Commun, 8, 2017
7MK3
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BU of 7mk3 by Molmil
Crystal structure of NPR1
Descriptor: CHLORIDE ION, GLYCEROL, Regulatory protein NPR1, ...
Authors:Cheng, J, Wu, Q, Zhou, P.
Deposit date:2021-04-21
Release date:2022-03-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.06 Å)
Cite:Structural basis of NPR1 in activating plant immunity.
Nature, 605, 2022
8TCF
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BU of 8tcf by Molmil
Integrin alpha-v beta-8 in complex with minibinder B8_BP_dsulf
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Campbell, M.G, Fernandez, A, Roy, A, Kraft, J, Baker, D.
Deposit date:2023-06-30
Release date:2023-09-27
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:De novo design of highly selective miniprotein inhibitors of integrins alpha v beta 6 and alpha v beta 8.
Nat Commun, 14, 2023
8TCG
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BU of 8tcg by Molmil
Integrin alpha-v beta-6 in complex with minibinder B6_BP_dslf
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Integrin alpha-V heavy chain, ...
Authors:Campbell, M.G, Fernandez, A, Roy, A, Kraft, J, Baker, D.
Deposit date:2023-06-30
Release date:2023-09-27
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:De novo design of highly selective miniprotein inhibitors of integrins alpha v beta 6 and alpha v beta 8.
Nat Commun, 14, 2023
7TAE
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BU of 7tae by Molmil
Crystal Structure of the NPR1-Interacting Domain of TGA3
Descriptor: GLYCEROL, PALMITIC ACID, Transcription factor TGA3
Authors:Cheng, J, Zhou, P.
Deposit date:2021-12-20
Release date:2022-03-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural basis of NPR1 in activating plant immunity.
Nature, 605, 2022
7MK2
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BU of 7mk2 by Molmil
CryoEM Structure of NPR1
Descriptor: Regulatory protein NPR1, ZINC ION
Authors:Kumar, S, Zhou, Y, Dillard, L, Borgnia, M, Bartesaghi, A, Zhou, P.
Deposit date:2021-04-21
Release date:2022-03-16
Last modified:2022-06-22
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structural basis of NPR1 in activating plant immunity.
Nature, 605, 2022
5TX5
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BU of 5tx5 by Molmil
Rip1 Kinase ( flag 1-294, C34A, C127A, C233A, C240A) with GSK772
Descriptor: 3-benzyl-N-[(3S)-5-methyl-4-oxo-2,3,4,5-tetrahydro-1,5-benzoxazepin-3-yl]-1H-1,2,4-triazole-5-carboxamide, Receptor-interacting serine/threonine-protein kinase 1
Authors:Campobasso, N, Ward, P, Thrope, J.
Deposit date:2016-11-15
Release date:2017-07-05
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.56 Å)
Cite:Discovery of a First-in-Class Receptor Interacting Protein 1 (RIP1) Kinase Specific Clinical Candidate (GSK2982772) for the Treatment of Inflammatory Diseases.
J. Med. Chem., 60, 2017
5HX6
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BU of 5hx6 by Molmil
Crystal structure of RIP1 kinase with a benzo[b][1,4]oxazepin-4-one
Descriptor: 5-benzyl-N-[(3S)-5-methyl-4-oxo-2,3,4,5-tetrahydro-1,5-benzoxazepin-3-yl]-1,2-oxazole-3-carboxamide, Receptor-interacting serine/threonine-protein kinase 1
Authors:Campobasso, N, Ward, P.
Deposit date:2016-01-29
Release date:2016-03-02
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.23 Å)
Cite:DNA-Encoded Library Screening Identifies Benzo[b][1,4]oxazepin-4-ones as Highly Potent and Monoselective Receptor Interacting Protein 1 Kinase Inhibitors.
J.Med.Chem., 59, 2016
6LLB
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BU of 6llb by Molmil
Crystal structure of mpy-RNase J (mutant S247A), an archaeal RNase J from Methanolobus psychrophilus R15, in complex with 6 nt RNA
Descriptor: MPY-RNase J, RNA (5'-R(P*AP*AP*AP*AP*AP*A)-3'), SULFATE ION, ...
Authors:Li, D.F, Hou, Y.J, Guo, L.
Deposit date:2019-12-22
Release date:2020-01-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:A newly identified duplex RNA unwinding activity of archaeal RNase J depends on processive exoribonucleolysis coupled steric occlusion by its structural archaeal loops.
Rna Biol., 17, 2020
6HMX
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BU of 6hmx by Molmil
RIP2 Kinase Catalytic Domain complex with N(4,5dimethyl1Hpyrazol3yl)7methoxy6(2methylpropane2sulfonyl)quinolin4amine
Descriptor: 6-~{tert}-butylsulfonyl-~{N}-(3,4-dimethyl-1~{H}-pyrazol-5-yl)-7-methoxy-quinolin-4-amine, Receptor-interacting serine/threonine-protein kinase 2
Authors:Convery, M.A, Haile, P.A.
Deposit date:2018-09-13
Release date:2018-11-07
Method:X-RAY DIFFRACTION (2.53 Å)
Cite:Identification of Quinoline-Based RIP2 Kinase Inhibitors with an Improved Therapeutic Index to the hERG Ion Channel.
ACS Med Chem Lett, 9, 2018
6JYK
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BU of 6jyk by Molmil
Crystal Structure of C. crescentus free GapR
Descriptor: UPF0335 protein CCNA_03428
Authors:Xia, B, Huang, Q.
Deposit date:2019-04-26
Release date:2020-08-05
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:GapR binds DNA through dynamic opening of its tetrameric interface.
Nucleic Acids Res., 48, 2020
7DAC
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BU of 7dac by Molmil
Human RIPK3 amyloid fibril revealed by solid-state NMR
Descriptor: Receptor-interacting serine/threonine-protein kinase 3
Authors:Wu, X.L, Zhang, J, Dong, X.Q, Liu, J, Li, B, Hu, H, Wang, J, Wang, H.Y, Lu, J.X.
Deposit date:2020-10-16
Release date:2021-04-28
Last modified:2024-05-01
Method:SOLID-STATE NMR
Cite:The structure of a minimum amyloid fibril core formed by necroptosis-mediating RHIM of human RIPK3.
Proc.Natl.Acad.Sci.USA, 118, 2021
6K2J
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BU of 6k2j by Molmil
Crystal Structure of the DNA Complex of C. crescentus GapR
Descriptor: 10A DNA_front, 10A DNA_reverse, UPF0335 protein CCNA_03428
Authors:Xia, B, Huang, Q.
Deposit date:2019-05-14
Release date:2020-08-05
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:GapR binds DNA through dynamic opening of its tetrameric interface.
Nucleic Acids Res., 48, 2020
7D0F
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BU of 7d0f by Molmil
cryo-EM structure of a pre-catalytic group II intron RNP
Descriptor: Group II intron-encoded protein LtrA, RNA (738-MER)
Authors:Liu, N, Dong, X.L, Hu, C.X, Zeng, J.W, Wang, J.W, Wang, J, Wang, H.W, Belfort, M.
Deposit date:2020-09-10
Release date:2020-09-30
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (5 Å)
Cite:Exon and protein positioning in a pre-catalytic group II intron RNP primed for splicing.
Nucleic Acids Res., 48, 2020

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PDB entries from 2024-05-01

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