1BVE
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 1bve by Molmil](/molmil-images/mine/1bve) | HIV-1 PROTEASE-DMP323 COMPLEX IN SOLUTION, NMR, 28 STRUCTURES | Descriptor: | HIV-1 PROTEASE, [4-R-(-4-ALPHA,5-ALPHA,6-BETA,7-BETA)]-HEXAHYDRO-5,6-BIS(HYDROXY)-[1,3-BIS([4-HYDROXYMETHYL-PHENYL]METHYL)-4,7-BIS(PHEN YLMETHYL)]-2H-1,3-DIAZEPINONE | Authors: | Yamazaki, T, Hinck, A.P, Wang, Y.-X, Nicholson, L.K, Torchia, D.A, Wingfield, P, Stahl, S.J, Kaufman, J.D, Chang, C, Domaille, P.J, Lam, P.Y.S. | Deposit date: | 1996-01-16 | Release date: | 1996-08-17 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | Three-dimensional solution structure of the HIV-1 protease complexed with DMP323, a novel cyclic urea-type inhibitor, determined by nuclear magnetic resonance spectroscopy. Protein Sci., 5, 1996
|
|
1BVG
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 1bvg by Molmil](/molmil-images/mine/1bvg) | HIV-1 PROTEASE-DMP323 COMPLEX IN SOLUTION, NMR MINIMIZED AVERAGE STRUCTURE | Descriptor: | HIV-1 PROTEASE, [4-R-(-4-ALPHA,5-ALPHA,6-BETA,7-BETA)]-HEXAHYDRO-5,6-BIS(HYDROXY)-[1,3-BIS([4-HYDROXYMETHYL-PHENYL]METHYL)-4,7-BIS(PHEN YLMETHYL)]-2H-1,3-DIAZEPINONE | Authors: | Yamazaki, T, Hinck, A.P, Wang, Y.-X, Nicholson, L.K, Torchia, D.A, Wingfield, P, Stahl, S.J, Kaufman, J.D, Chang, C, Domaille, P.J, Lam, P.Y.S. | Deposit date: | 1996-01-16 | Release date: | 1996-08-17 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | Three-dimensional solution structure of the HIV-1 protease complexed with DMP323, a novel cyclic urea-type inhibitor, determined by nuclear magnetic resonance spectroscopy. Protein Sci., 5, 1996
|
|
1JU8
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 1ju8 by Molmil](/molmil-images/mine/1ju8) | Solution structure of Leginsulin, a plant hormon | Descriptor: | Leginsulin | Authors: | Yamazaki, T, Takaoka, M, Katoh, E, Hanada, K, Sakita, M, Sakata, K, Nishiuchi, Y, Hirano, H. | Deposit date: | 2001-08-23 | Release date: | 2003-06-17 | Last modified: | 2022-02-23 | Method: | SOLUTION NMR | Cite: | A possible physiological function and the tertiary structure of a 4-kDa peptide in legumes EUR.J.BIOCHEM., 270, 2003
|
|
1C9F
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 1c9f by Molmil](/molmil-images/mine/1c9f) | |
1RCH
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 1rch by Molmil](/molmil-images/mine/1rch) | SOLUTION NMR STRUCTURE OF RIBONUCLEASE HI FROM ESCHERICHIA COLI, 8 STRUCTURES | Descriptor: | RIBONUCLEASE HI | Authors: | Yamazaki, T, Fujiwara, M, Kato, T, Yamasaki, K, Nagayama, K. | Deposit date: | 1995-06-23 | Release date: | 1997-02-12 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | Solution Structure of Ribonuclease Hi from Escherichia Coli Biol.Pharm.Bull., 23, 2000
|
|
1IRZ
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 1irz by Molmil](/molmil-images/mine/1irz) | |
8XZ2
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 8xz2 by Molmil](/molmil-images/mine/8xz2) | The structural model of a homodimeric D-Ala-D-Ala metallopeptidase, VanX, from vancomycin-resistant bacteria | Descriptor: | D-alanyl-D-alanine dipeptidase | Authors: | Konuma, T, Takai, T, Tsuchiya, C, Nishida, M, Hashiba, M, Yamada, Y, Shirai, H, Motoda, Y, Nagadoi, A, Chikaishi, E, Akagi, K, Akashi, S, Yamazaki, T, Akutsu, H, Oe, A, Ikegami, T. | Deposit date: | 2024-01-20 | Release date: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | Analysis of the homodimeric structure of a D-Ala-D-Ala metallopeptidase, VanX, from vancomycin-resistant bacteria. Protein Sci., 33, 2024
|
|
1DCJ
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 1dcj by Molmil](/molmil-images/mine/1dcj) | SOLUTION STRUCTURE OF YHHP, A NOVEL ESCHERICHIA COLI PROTEIN IMPLICATED IN THE CELL DIVISION | Descriptor: | YHHP PROTEIN | Authors: | Katoh, E, Hatta, T, Shindo, H, Mizuno, T, Yamazaki, T. | Deposit date: | 1999-11-05 | Release date: | 2001-07-18 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | High precision NMR structure of YhhP, a novel Escherichia coli protein implicated in cell division. J.Mol.Biol., 304, 2000
|
|
1IY5
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 1iy5 by Molmil](/molmil-images/mine/1iy5) | Solution structure of wild type OMSVP3 | Descriptor: | OMSVP3 | Authors: | Hemmi, H, Kumazaki, T, Yamazaki, T, Kojima, S, Yoshida, T, Kyogoku, Y, Katsu, M, Yokosawa, H, Miura, K, Kobayashi, Y. | Deposit date: | 2002-07-23 | Release date: | 2003-03-11 | Last modified: | 2023-12-27 | Method: | SOLUTION NMR | Cite: | Inhibitory Specificity Change of Ovomucoid Third Domain of the Silver Pheasant upon Introduction of an Engineered Cys14-Cys39 Bond BIOCHEMISTRY, 42, 2003
|
|
3WEB
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 3web by Molmil](/molmil-images/mine/3web) | Crystal structure of a Niemann-Pick type C2 protein from Japanese carpenter ant in complex with oleic acid | Descriptor: | Niemann-Pick type C2 protein, OLEIC ACID | Authors: | Fujimoto, Z, Tsuchiya, W, Ishida, Y, Yamazaki, T. | Deposit date: | 2013-07-02 | Release date: | 2014-02-05 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Niemann-Pick type C2 protein mediating chemical communication in the worker ant Proc.Natl.Acad.Sci.USA, 111, 2014
|
|
1AYG
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 1ayg by Molmil](/molmil-images/mine/1ayg) | SOLUTION STRUCTURE OF CYTOCHROME C-552, NMR, 20 STRUCTURES | Descriptor: | CYTOCHROME C-552, HEME C | Authors: | Hasegawa, J, Yoshida, T, Yamazaki, T, Sambongi, Y, Yu, Y, Igarashi, Y, Kodama, T, Yamazaki, K, Hakusui, H, Kyogoku, Y, Kobayashi, Y. | Deposit date: | 1997-11-04 | Release date: | 1998-11-25 | Last modified: | 2022-02-16 | Method: | SOLUTION NMR | Cite: | Solution structure of thermostable cytochrome c-552 from Hydrogenobacter thermophilus determined by 1H-NMR spectroscopy. Biochemistry, 37, 1998
|
|
1IRG
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 1irg by Molmil](/molmil-images/mine/1irg) | INTERFERON REGULATORY FACTOR-2 DNA BINDING DOMAIN, NMR, 20 STRUCTURES | Descriptor: | INTERFERON REGULATORY FACTOR-2 | Authors: | Furui, J, Uegaki, K, Yamazaki, T, Shirakawa, M, Swindells, M.B, Harada, H, Taniguchi, T, Kyogoku, Y. | Deposit date: | 1997-11-25 | Release date: | 1998-03-18 | Last modified: | 2024-05-01 | Method: | SOLUTION NMR | Cite: | Solution structure of the IRF-2 DNA-binding domain: a novel subgroup of the winged helix-turn-helix family. Structure, 6, 1998
|
|
1IRF
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 1irf by Molmil](/molmil-images/mine/1irf) | INTERFERON REGULATORY FACTOR-2 DNA BINDING DOMAIN, NMR, MINIMIZED AVERAGE STRUCTURE | Descriptor: | INTERFERON REGULATORY FACTOR-2 | Authors: | Furui, J, Uegaki, K, Yamazaki, T, Shirakawa, M, Swindells, M.B, Harada, H, Taniguchi, T, Kyogoku, Y. | Deposit date: | 1997-11-24 | Release date: | 1998-01-28 | Last modified: | 2024-05-01 | Method: | SOLUTION NMR | Cite: | Solution structure of the IRF-2 DNA-binding domain: a novel subgroup of the winged helix-turn-helix family. Structure, 6, 1998
|
|
1COO
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 1coo by Molmil](/molmil-images/mine/1coo) | THE COOH-TERMINAL DOMAIN OF RNA POLYMERASE ALPHA SUBUNIT | Descriptor: | RNA POLYMERASE ALPHA SUBUNIT | Authors: | Jeon, Y.H, Negishi, T, Shirakawa, M, Yamazaki, T, Fujita, N, Ishihama, A, Kyogoku, Y. | Deposit date: | 1995-10-09 | Release date: | 1996-03-08 | Last modified: | 2024-04-10 | Method: | SOLUTION NMR | Cite: | Solution structure of the activator contact domain of the RNA polymerase alpha subunit. Science, 270, 1995
|
|
1DOQ
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 1doq by Molmil](/molmil-images/mine/1doq) | |
1K2G
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 1k2g by Molmil](/molmil-images/mine/1k2g) | Structural basis for the 3'-terminal guanosine recognition by the group I intron | Descriptor: | 5'-R(*CP*AP*GP*AP*CP*UP*UP*CP*GP*GP*UP*CP*GP*CP*AP*GP*AP*GP*AP*UP*GP*G)-3' | Authors: | Kitamura, Y, Muto, Y, Watanabe, S, Kim, I, Ito, T, Nishiya, Y, Sakamoto, K, Ohtsuki, T, Kawai, G, Watanabe, K, Hosono, K, Takaku, H, Katoh, E, Yamazaki, T, Inoue, T, Yokoyama, S. | Deposit date: | 2001-09-27 | Release date: | 2002-05-08 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | Solution structure of an RNA fragment with the P7/P9.0 region and the 3'-terminal guanosine of the tetrahymena group I intron. RNA, 8, 2002
|
|
7D2O
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 7d2o by Molmil](/molmil-images/mine/7d2o) | |
1IYM
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 1iym by Molmil](/molmil-images/mine/1iym) | RING-H2 finger domain of EL5 | Descriptor: | EL5, ZINC ION | Authors: | Katoh, E, Katoh, S, Minami, E, Yamazaki, T. | Deposit date: | 2002-08-30 | Release date: | 2003-07-22 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | High Precision NMR Structure and Function of the RING-H2 Finger Domain of EL5, a Rice Protein Whose Expression Is Increased upon Exposure to Pathogen-derived Oligosaccharides J.Biol.Chem., 278, 2003
|
|
3A1Z
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 3a1z by Molmil](/molmil-images/mine/3a1z) | Crystal structure of juvenile hormone binding protein from silkworm | Descriptor: | (4S)-2-METHYL-2,4-PENTANEDIOL, Hemolymph juvenile hormone binding protein, ZINC ION | Authors: | Suzuki, R, Fujimoto, Z, Shiotsuki, T, Momma, M, Tase, A, Yamazaki, T. | Deposit date: | 2009-04-27 | Release date: | 2010-04-28 | Last modified: | 2017-03-15 | Method: | X-RAY DIFFRACTION (2.59 Å) | Cite: | Crystal structure of silkworm Bombyx mori JHBP in complex with 2-methyl-2,4-pentanediol: plasticity of JH-binding pocket and ligand-induced conformational change of the second cavity in JHBP Plos One, 8, 2013
|
|
3AOS
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 3aos by Molmil](/molmil-images/mine/3aos) | Crystal structure of juvenile hormone binding protein from silkworm in complex with JH II | Descriptor: | Hemolymph juvenile hormone binding protein, methyl (2E,6E)-9-[(2R,3S)-3-ethyl-3-methyloxiran-2-yl]-3,7-dimethylnona-2,6-dienoate | Authors: | Fujimoto, Z, Suzuki, R, Shiotsuki, T, Momma, M, Yamazaki, T. | Deposit date: | 2010-10-06 | Release date: | 2011-10-12 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Structural mechanism of JH delivery in hemolymph by JHBP of silkworm, Bombyx mori Sci Rep, 1, 2011
|
|
3AOT
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 3aot by Molmil](/molmil-images/mine/3aot) | Crystal structure of juvenile hormone binding protein from silkworm in its apo form | Descriptor: | DI(HYDROXYETHYL)ETHER, Hemolymph juvenile hormone binding protein, TETRAETHYLENE GLYCOL, ... | Authors: | Fujimoto, Z, Suzuki, R, Shiotsuki, T, Momma, M, Yamazaki, T. | Deposit date: | 2010-10-06 | Release date: | 2011-10-12 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Structural mechanism of JH delivery in hemolymph by JHBP of silkworm, Bombyx mori. Sci Rep, 1, 2011
|
|
1C4L
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 1c4l by Molmil](/molmil-images/mine/1c4l) | SOLUTION STRUCTURE OF AN RNA DUPLEX INCLUDING A C-U BASE-PAIR | Descriptor: | RNA (5'-R(*CP*CP*UP*GP*CP*GP*UP*CP*G)-3'), RNA (5'-R(*CP*GP*AP*CP*UP*CP*AP*GP*G)-3') | Authors: | Tanaka, Y, Kojima, C, Yamazaki, T, Kodama, T.S, Yasuno, K, Miyashita, S, Ono, A.M, Ono, A.S, Kainosho, M, Kyogoku, Y. | Deposit date: | 1999-08-30 | Release date: | 2000-08-09 | Last modified: | 2023-12-27 | Method: | SOLUTION NMR | Cite: | Solution structure of an RNA duplex including a C-U base pair. Biochemistry, 39, 2000
|
|
2RQF
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 2rqf by Molmil](/molmil-images/mine/2rqf) | Solution structure of juvenile hormone binding protein from silkworm in complex with JH III | Descriptor: | Hemolymph juvenile hormone binding protein, methyl (2E,6E)-9-[(2R)-3,3-dimethyloxiran-2-yl]-3,7-dimethylnona-2,6-dienoate | Authors: | Suzuki, R, Fujimoto, Z, Shiotsuki, T, Momma, M, Tase, A, Yamazaki, T. | Deposit date: | 2009-04-27 | Release date: | 2010-05-05 | Last modified: | 2013-06-19 | Method: | SOLUTION NMR | Cite: | Structural mechanism of JH delivery in hemolymph by JHBP of silkworm, Bombyx mori Sci Rep, 1, 2011
|
|
1F2R
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 1f2r by Molmil](/molmil-images/mine/1f2r) | NMR STRUCTURE OF THE HETERODIMERIC COMPLEX BETWEEN CAD DOMAINS OF CAD AND ICAD | Descriptor: | CASPASE-ACTIVATED DNASE, INHIBITOR OF CASPASE-ACTIVATED DNASE | Authors: | Otomo, T, Sakahira, H, Uegaki, K, Nagata, S, Yamazaki, T. | Deposit date: | 2000-05-29 | Release date: | 2000-06-08 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | Structure of the heterodimeric complex between CAD domains of CAD and ICAD. Nat.Struct.Biol., 7, 2000
|
|
6M0Q
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 6m0q by Molmil](/molmil-images/mine/6m0q) | Hydroxylamine oxidoreductase from Nitrosomonas europaea | Descriptor: | Aerobic hydroxylamine oxidoreductase, DI(HYDROXYETHYL)ETHER, HEME C, ... | Authors: | Fujiwara, T, Fujimoto, Z, Nishigaya, Y, Yamazaki, T. | Deposit date: | 2020-02-22 | Release date: | 2021-03-10 | Last modified: | 2024-05-08 | Method: | X-RAY DIFFRACTION (1.99 Å) | Cite: | Juglone, a plant-derived 1,4-naphthoquinone, binds to hydroxylamine oxidoreductase and inhibits the electron transfer to cytochrome c 554. Appl.Environ.Microbiol., 89, 2023
|
|