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8JOK
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BU of 8jok by Molmil
Crystal structure of V30L mutated human transthyretin
Descriptor: MAGNESIUM ION, Transthyretin
Authors:Mizuguchi, M, Yamada, S, Obita, T.
Deposit date:2023-06-07
Release date:2024-04-17
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Trypsin-induced aggregation of transthyretin Valine 30 variants associated with hereditary amyloidosis.
Febs J., 291, 2024
8JQW
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BU of 8jqw by Molmil
Crystal structure of V30I mutated human transthyretin
Descriptor: MAGNESIUM ION, Transthyretin
Authors:Mizuguchi, M, Yamada, S, Obita, T.
Deposit date:2023-06-15
Release date:2024-04-17
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Trypsin-induced aggregation of transthyretin Valine 30 variants associated with hereditary amyloidosis.
Febs J., 291, 2024
8JNU
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BU of 8jnu by Molmil
Crystal structure of V30G mutated human transthyretin
Descriptor: MAGNESIUM ION, Transthyretin
Authors:Mizuguchi, M, Yamada, S, Obita, T.
Deposit date:2023-06-06
Release date:2024-04-17
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Trypsin-induced aggregation of transthyretin Valine 30 variants associated with hereditary amyloidosis.
Febs J., 291, 2024
1WO1
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BU of 1wo1 by Molmil
Tachyplesin I in dodecylphosphocholine micelles
Descriptor: Tachyplesin I
Authors:Mizuguchi, M, Kamata, S, Kawabata, S, Fujitani, N, Kawano, K.
Deposit date:2004-08-11
Release date:2005-08-09
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Solution structure of tachyplesin I in dodecylphosphocholine
to be published
1WO0
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BU of 1wo0 by Molmil
Solution structure of tachyplesin I in H2O
Descriptor: Tachyplesin I
Authors:Mizuguchi, M, Kamata, S, Kawabata, S, Fujitani, N, Kawano, K.
Deposit date:2004-08-11
Release date:2005-08-09
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Solution structure of tachyplesin I in H2O
to be published
4BWS
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BU of 4bws by Molmil
Crystal structure of the heterotrimer of PQBP1, U5-15kD and U5-52kD.
Descriptor: CD2 ANTIGEN CYTOPLASMIC TAIL-BINDING PROTEIN 2, POLYGLUTAMINE-BINDING PROTEIN 1, THIOREDOXIN-LIKE PROTEIN 4A
Authors:Mizuguchi, M, Obita, T, Serita, T, Kojima, R, Morimoto, T, Nabeshima, Y, Okazawa, H.
Deposit date:2013-07-04
Release date:2014-04-30
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Mutations in the Pqbp1 Gene Prevent its Interaction with the Spliceosomal Protein U5-15Kd.
Nat.Commun., 5, 2014
4BWQ
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BU of 4bwq by Molmil
Crystal structure of U5-15kD in a complex with PQBP1
Descriptor: POLYGLUTAMINE-BINDING PROTEIN 1, THIOREDOXIN-LIKE PROTEIN 4A
Authors:Mizuguchi, M, Obita, T, Serita, T, Kojima, R, Morimoto, T, Nabeshima, Y, Okazawa, H.
Deposit date:2013-07-04
Release date:2014-04-30
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Mutations in the Pqbp1 Gene Prevent its Interaction with the Spliceosomal Protein U5-15Kd.
Nat.Commun., 5, 2014
4CDO
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BU of 4cdo by Molmil
Crystal structure of PQBP1 bound to spliceosomal U5-15kD
Descriptor: THIOREDOXIN-LIKE PROTEIN 4A, POLYGLUTAMINE-BINDING PROTEIN
Authors:Mizuguchi, M, Obita, T, Serita, T, Kojima, R, Nabeshima, Y, Okazawa, H.
Deposit date:2013-11-05
Release date:2014-04-30
Last modified:2014-05-14
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Mutations in the Pqbp1 Gene Prevent its Interaction with the Spliceosomal Protein U5-15Kd.
Nat.Commun., 5, 2014
7W9Q
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BU of 7w9q by Molmil
Crystal structure of V30M-TTR in complex with naringenin derivative-14
Descriptor: (2~{R})-2-(3-chloranyl-4-oxidanyl-phenyl)-5,7-bis(oxidanyl)-2,3-dihydrochromen-4-one, CALCIUM ION, Transthyretin
Authors:Katayama, W, Shimane, A, Nabeshima, Y, Yokoyama, T, Mizuguchi, M.
Deposit date:2021-12-10
Release date:2022-12-14
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.599 Å)
Cite:Chlorinated Naringenin Analogues as Potential Inhibitors of Transthyretin Amyloidogenesis.
J.Med.Chem., 65, 2022
7W9R
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BU of 7w9r by Molmil
Crystal structure of V30M-TTR in complex with naringenin derivative-18
Descriptor: (2~{R})-2-[3,5-bis(chloranyl)-4-oxidanyl-phenyl]-5,7-bis(oxidanyl)-2,3-dihydrochromen-4-one, Transthyretin
Authors:Katayama, W, Shimane, A, Nabeshima, Y, Yokoyama, T, Mizuguchi, M.
Deposit date:2021-12-10
Release date:2022-12-14
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.997 Å)
Cite:Chlorinated Naringenin Analogues as Potential Inhibitors of Transthyretin Amyloidogenesis.
J.Med.Chem., 65, 2022
8I75
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BU of 8i75 by Molmil
Crystal structure of decarboxylated osteocalcin at pH 2.0
Descriptor: Osteocalcin
Authors:Yokoyama, T, Nabeshima, Y, Obita, T, Mizuguchi, M.
Deposit date:2023-01-31
Release date:2024-01-31
Method:X-RAY DIFFRACTION (1.33 Å)
Cite:Crystal structures of decarboxylated osteocalcin and implications for the interaction with its receptor
To Be Published
8I76
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BU of 8i76 by Molmil
Crystal structure of decarboxylated osteocalcin at pH 2.0 without glycerol
Descriptor: Osteocalcin
Authors:Yokoyama, T, Nabeshima, Y, Obita, T, Mizuguchi, M.
Deposit date:2023-01-31
Release date:2024-01-31
Method:X-RAY DIFFRACTION (1.381 Å)
Cite:Crystal structures of decarboxylated osteocalcin and implications for the interaction with its receptor
To Be Published
8I74
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BU of 8i74 by Molmil
Crystal structure of decarboxylated osteocalcin at pH 8.5
Descriptor: Osteocalcin
Authors:Yokoyama, T, Nabeshima, Y, Obita, T, Mizuguchi, M.
Deposit date:2023-01-31
Release date:2024-01-31
Method:X-RAY DIFFRACTION (1.36 Å)
Cite:Crystal structures of decarboxylated osteocalcin and implications for the interaction with its receptor
To Be Published
3U2J
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BU of 3u2j by Molmil
Neutron crystal structure of human Transthyretin
Descriptor: Transthyretin
Authors:Yokoyama, T, Mizuguchi, M, Nabeshima, Y, Kusaka, K, Yamada, T, Hosoya, T, Ohhara, T, Kurihara, K, Tomoyori, K, Tanaka, I, Niimura, N.
Deposit date:2011-10-03
Release date:2012-02-22
Last modified:2023-11-01
Method:NEUTRON DIFFRACTION (2 Å)
Cite:Hydrogen-bond network and pH sensitivity in transthyretin: Neutron crystal structure of human transthyretin
J.Struct.Biol., 177, 2012
3U2I
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BU of 3u2i by Molmil
X-ray crystal structure of human Transthyretin at room temperature
Descriptor: Transthyretin
Authors:Yokoyama, T, Mizuguchi, M, Nabeshima, Y, Kusaka, K, Yamada, T, Hosoya, T, Ohhara, T, Kurihara, K, Tomoyori, K, Tanaka, I, Niimura, N.
Deposit date:2011-10-03
Release date:2012-02-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Hydrogen-bond network and pH sensitivity in transthyretin: Neutron crystal structure of human transthyretin
J.Struct.Biol., 177, 2012
2MDB
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BU of 2mdb by Molmil
Tachyplesin I in the presence of lipopolysaccharide
Descriptor: Tachyplesin-1
Authors:Kushibiki, T, Kamiya, M, Aizawa, T, Kumaki, Y, Kikukawa, T, Mizuguchi, M, Demura, M, Kawabata, S.I, Kawano, K.
Deposit date:2013-09-09
Release date:2014-02-19
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Interaction between tachyplesin I, an antimicrobial peptide derived from horseshoe crab, and lipopolysaccharide.
Biochim.Biophys.Acta, 1844, 2014
6KGB
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BU of 6kgb by Molmil
Crystal structure of E61K mutated transthyretin
Descriptor: CALCIUM ION, Transthyretin
Authors:Yokoyama, T, Mizuguchi, M.
Deposit date:2019-07-11
Release date:2020-07-22
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:A low amyloidogenic E61K transthyretin mutation may cause familial amyloid polyneuropathy.
J.Neurochem., 156, 2021
5X2L
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BU of 5x2l by Molmil
Crystal Structure of Human Serine Racemase
Descriptor: MAGNESIUM ION, PYRIDOXAL-5'-PHOSPHATE, Serine racemase
Authors:Obita, T, Matsumoto, K, Mori, H, Toyooka, N, Mizuguchi, M.
Deposit date:2017-02-01
Release date:2018-01-31
Last modified:2021-02-24
Method:X-RAY DIFFRACTION (1.806 Å)
Cite:Design, synthesis, and evaluation of novel inhibitors for wild-type human serine racemase.
Bioorg. Med. Chem. Lett., 2017
7WL6
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BU of 7wl6 by Molmil
Crystal structure of I73L mutated human transthyretin
Descriptor: MAGNESIUM ION, Transthyretin
Authors:Nakagawa, M, Obita, T, Mizuguchi, M.
Deposit date:2022-01-12
Release date:2022-11-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.418007 Å)
Cite:The hydrophobic residue Leu73 is crucial for the high stability and low aggregation properties of murine transthyretin.
Biochem.J., 479, 2022
5H0Y
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BU of 5h0y by Molmil
Crystal structure of H88Y mutated human transthyretin
Descriptor: CHLORIDE ION, SULFATE ION, Transthyretin
Authors:Yokoyama, T, Hanawa, Y, Obita, T, Mizuguchi, M.
Deposit date:2016-10-07
Release date:2017-06-14
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Stability and crystal structures of His88 mutant human transthyretins
FEBS Lett., 591, 2017
2RTV
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BU of 2rtv by Molmil
Tachyplesin I in water
Descriptor: Tachyplesin-1
Authors:Kushibiki, T, Kamiya, M, Aizawa, T, Kumaki, Y, Kikukawa, T, Mizuguchi, M, Demura, M, Kawabata, S.I, Kawano, K.
Deposit date:2013-09-19
Release date:2014-02-19
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Interaction between tachyplesin I, an antimicrobial peptide derived from horseshoe crab, and lipopolysaccharide.
Biochim.Biophys.Acta, 1844, 2014
2RQ2
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BU of 2rq2 by Molmil
The solution structure of the N-terminal fragment of big defensin
Descriptor: Big defensin
Authors:Kouno, T, Mizuguchi, M, Aizawa, T, Shinoda, H, Demura, M, Kawabata, S, Kawano, K.
Deposit date:2009-01-07
Release date:2009-08-25
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:A novel beta-defensin structure: big defensin changes its N-terminal structure to associate with the target membrane
Biochemistry, 48, 2009
2RNG
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BU of 2rng by Molmil
Solution structure of big defensin
Descriptor: Big defensin
Authors:Kouno, T, Fujitani, N, Osaki, T, Kawabata, S, Nishimura, S, Mizuguchi, M, Aizawa, T, Demura, M, Nitta, K, Kawano, K.
Deposit date:2007-12-27
Release date:2008-10-14
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:A novel beta-defensin structure: a potential strategy of big defensin for overcoming resistance by Gram-positive bacteria
Biochemistry, 47, 2008
4Y9B
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BU of 4y9b by Molmil
Crystal structure of V30M mutated transthyretin in complex with alpha-mangostin
Descriptor: 1,3,6-trihydroxy-7-methoxy-2,8-bis(3-methylbut-2-en-1-yl)-9H-xanthen-9-one, CALCIUM ION, CHLORIDE ION, ...
Authors:Yokoyama, T, Mizuguchi, M.
Deposit date:2015-02-17
Release date:2015-09-09
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Discovery of gamma-Mangostin as an Amyloidogenesis Inhibitor
Sci Rep, 5, 2015
4Y9F
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BU of 4y9f by Molmil
Crystal structure of V30M mutated transthyretin with bromide in complex with gamma-mangostin
Descriptor: 1,3,6,7-tetrahydroxy-2,8-bis(3-methylbut-2-en-1-yl)-9H-xanthen-9-one, BROMIDE ION, Transthyretin
Authors:Yokoyama, T, Mizuguchi, M.
Deposit date:2015-02-17
Release date:2015-09-09
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Discovery of gamma-Mangostin as an Amyloidogenesis Inhibitor
Sci Rep, 5, 2015

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數據於2024-05-01公開中

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