Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
7ENP
DownloadVisualize
BU of 7enp by Molmil
wild type of O type Foot-and-mouth disease virus
Descriptor: VP1 of O type FMDV capsid protein, VP2 of O type FMDV capsid protein, VP3 of O type FMDV capsid protein, ...
Authors:Dong, H, Lu, Y.
Deposit date:2021-04-18
Release date:2021-06-02
Last modified:2022-01-26
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:A Heat-Induced Mutation on VP1 of Foot-and-Mouth Disease Virus Serotype O Enhanced Capsid Stability and Immunogenicity.
J.Virol., 95, 2021
7YIW
DownloadVisualize
BU of 7yiw by Molmil
The Crystal Structure of Human Tissue Nonspecific Alkaline Phosphatase (ALPL) at Acidic pH
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Alkaline phosphatase, ...
Authors:Yu, Y.T, Yao, D.Q, Zhang, Q, Rao, B, Xia, Y, Lu, Y, Qin, A, Cao, Y.
Deposit date:2022-07-18
Release date:2023-07-19
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.89 Å)
Cite:The structural pathology for hypophosphatasia caused by malfunctional tissue non-specific alkaline phosphatase.
Nat Commun, 14, 2023
7YIV
DownloadVisualize
BU of 7yiv by Molmil
The Crystal Structure of Human Tissue Nonspecific Alkaline Phosphatase (ALPL) at Basic pH
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Alkaline phosphatase, ...
Authors:Cao, Y, Qin, A, Yu, Y.T, Yao, D.Q, Zhang, Q, Rao, B, Xia, Y, Lu, Y.
Deposit date:2022-07-18
Release date:2023-07-19
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.18 Å)
Cite:The structural pathology for hypophosphatasia caused by malfunctional tissue non-specific alkaline phosphatase.
Nat Commun, 14, 2023
7YIX
DownloadVisualize
BU of 7yix by Molmil
The Cryo-EM Structure of Human Tissue Nonspecific Alkaline Phosphatase and Single-Chain Fragment Variable (ScFv) Complex.
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Alkaline phosphatase, ...
Authors:Yu, Y.T, Yao, D.Q, Zhang, Q, Rao, B, Xia, Y, Lu, Y, Qin, A, Ma, P.X, Cao, Y.
Deposit date:2022-07-18
Release date:2023-08-16
Method:ELECTRON MICROSCOPY (2.96 Å)
Cite:The structural pathology for hypophosphatasia caused by malfunctional tissue non-specific alkaline phosphatase.
Nat Commun, 14, 2023
7KYR
DownloadVisualize
BU of 7kyr by Molmil
Crystal structure of I107E CuB myoglobin (I107E L29H F43H sperm whale myoglobin)
Descriptor: 1,2-ETHANEDIOL, Myoglobin, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Petrik, I, Lu, Y.
Deposit date:2020-12-08
Release date:2021-02-03
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:An Engineered Glutamate in Biosynthetic Models of Heme-Copper Oxidases Drives Complete Product Selectivity by Tuning the Hydrogen-Bonding Network.
Biochemistry, 60, 2021
7L3Y
DownloadVisualize
BU of 7l3y by Molmil
Crystal structure of oxy-I107E CuB myoglobin (I107E L29H F43H sperm whale myoglobin; partial occupancy)
Descriptor: CHLORIDE ION, Myoglobin, PEROXIDE ION, ...
Authors:Petrik, I, Lu, Y.
Deposit date:2020-12-18
Release date:2021-02-03
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.18 Å)
Cite:An Engineered Glutamate in Biosynthetic Models of Heme-Copper Oxidases Drives Complete Product Selectivity by Tuning the Hydrogen-Bonding Network.
Biochemistry, 60, 2021
7L3U
DownloadVisualize
BU of 7l3u by Molmil
Crystal structure of I107E F33Y CuB myoglobin (I107E F33Y L29H F43H sperm whale myoglobin)
Descriptor: Myoglobin, PROTOPORPHYRIN IX CONTAINING FE
Authors:Petrik, I, Lu, Y.
Deposit date:2020-12-18
Release date:2021-02-03
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:An Engineered Glutamate in Biosynthetic Models of Heme-Copper Oxidases Drives Complete Product Selectivity by Tuning the Hydrogen-Bonding Network.
Biochemistry, 60, 2021
7WWJ
DownloadVisualize
BU of 7wwj by Molmil
SARS-CoV-2 BA.1 Spike trimer in complex with 55A8 Fab in the class 2 conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 55A8 heavy chain, ...
Authors:Guo, H, Gao, Y, Lu, Y, Yang, H, Ji, X.
Deposit date:2022-02-13
Release date:2023-02-15
Last modified:2023-04-19
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:EM structure of SARS-CoV-2 Omicron variant spike glycoprotein and 55A8
To Be Published
7WWK
DownloadVisualize
BU of 7wwk by Molmil
Local refinement of the SARS-CoV-2 BA.1 Spike trimer in complex with 55A8 Fab
Descriptor: 55A8 light chain, Spike glycoprotein
Authors:Guo, H, Gao, Y, Lu, Y, Yang, H, Ji, X.
Deposit date:2022-02-13
Release date:2023-02-15
Last modified:2023-04-19
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Local refinement of the SARS-CoV-2 BA.1 Spike trimer in complex with 55A8 Fab
To Be Published
7WWI
DownloadVisualize
BU of 7wwi by Molmil
SARS-CoV-2 BA.1 Spike trimer in complex with 55A8 Fab in the class 1 conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 55A8 heavy chain, ...
Authors:Guo, H, Gao, Y, Lu, Y, Yang, H, Ji, X.
Deposit date:2022-02-13
Release date:2023-02-15
Last modified:2023-04-19
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:SARS-CoV-2 BA.1 Spike trimer in complex with 55A8 Fab in the class 1 conformation
To Be Published
7XJ9
DownloadVisualize
BU of 7xj9 by Molmil
Local refinement of the SARS-CoV-2 BA.1 Spike trimer in complex with 55A8 Fab and 58G6 Fab
Descriptor: 55A8 heavy chain, 55A8 light chain, 58G6 heavy chain, ...
Authors:Guo, H, Gao, Y, Lu, Y, Yang, H, Ji, X.
Deposit date:2022-04-15
Release date:2023-04-19
Method:ELECTRON MICROSCOPY (3.27 Å)
Cite:Local refinement of the SARS-CoV-2 BA.1 Spike trimer in complex with 55A8 Fab and 58G6 Fab
To Be Published
7XJ8
DownloadVisualize
BU of 7xj8 by Molmil
SARS-CoV-2 BA.1 Spike trimer in complex with 55A8 Fab and 58G6 Fab in the class 2 conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 55A8 heavy chain, ...
Authors:Guo, H, Gao, Y, Lu, Y, Yang, H, Ji, X.
Deposit date:2022-04-15
Release date:2023-04-19
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:SARS-CoV-2 BA.1 Spike trimer in complex with 55A8 Fab and 58G6 Fab in the class 2 conformation
To Be Published
7XJ6
DownloadVisualize
BU of 7xj6 by Molmil
SARS-CoV-2 BA.1 Spike trimer in complex with 55A8 Fab and 58G6 Fab in the class 1 conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 55A8 heavy chain, ...
Authors:Guo, H, Gao, Y, Lu, Y, Yang, H, Ji, X.
Deposit date:2022-04-15
Release date:2023-04-19
Method:ELECTRON MICROSCOPY (3.29 Å)
Cite:SARS-CoV-2 BA.1 Spike trimer in complex with 55A8 Fab and 58G6 Fab in the class 1 conformation
To Be Published
6M9T
DownloadVisualize
BU of 6m9t by Molmil
Crystal structure of EP3 receptor bound to misoprostol-FA
Descriptor: (11alpha,12alpha,13E,16S)-11,16-dihydroxy-16-methyl-9-oxoprost-13-en-1-oic acid, (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, OLEIC ACID, ...
Authors:Audet, M, White, K.L, Breton, B, Zarzycka, B, Han, G.W, Lu, Y, Gati, C, Batyuk, A, Popov, P, Velasquez, J, Manahan, D, Hu, H, Weierstall, U, Liu, W, Shui, W, Katrich, V, Cherezov, V, Hanson, M.A, Stevens, R.C.
Deposit date:2018-08-24
Release date:2018-12-05
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of misoprostol bound to the labor inducer prostaglandin E2receptor.
Nat. Chem. Biol., 15, 2019
7WXZ
DownloadVisualize
BU of 7wxz by Molmil
Crystal structure of the recombinant protein HR121 from the S2 protein of SARS-CoV-2
Descriptor: Spike protein S2'
Authors:Zheng, Y.T, Ouyang, S, Pang, W, Lu, Y, Zhao, Y.B.
Deposit date:2022-02-15
Release date:2022-11-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.41 Å)
Cite:A variant-proof SARS-CoV-2 vaccine targeting HR1 domain in S2 subunit of spike protein.
Cell Res., 32, 2022
7FCV
DownloadVisualize
BU of 7fcv by Molmil
Cryo-EM structure of the Potassium channel AKT1 mutant from Arabidopsis thaliana
Descriptor: PHOSPHATIDYLETHANOLAMINE, POTASSIUM ION, Potassium channel AKT1
Authors:Yang, G.H, Lu, Y.M, Jia, Y.T, Zhang, Y.M, Tang, R.F, Xu, X, Li, X.M, Lei, J.L.
Deposit date:2021-07-15
Release date:2022-11-09
Last modified:2023-04-12
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structural basis for the activity regulation of a potassium channel AKT1 from Arabidopsis.
Nat Commun, 13, 2022
7MVS
DownloadVisualize
BU of 7mvs by Molmil
DNA gyrase complexed with uncleaved DNA and Compound 7 to 2.6A resolution
Descriptor: (1S)-2-[(2r,5S)-5-{[(2,3-dihydro-1,4-benzodioxin-6-yl)methyl]amino}-1,3-dioxan-2-yl]-1-(3-fluoro-6-methoxyquinolin-4-yl)ethan-1-ol, CHLORIDE ION, DNA (5'-D(P*AP*GP*CP*CP*GP*TP*AP*GP*GP*GP*CP*CP*CP*TP*AP*CP*GP*GP*CP*T)-3'), ...
Authors:Ratigan, S.C, McElroy, C.A.
Deposit date:2021-05-15
Release date:2021-10-20
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.60137153 Å)
Cite:Optimization of TopoIV Potency, ADMET Properties, and hERG Inhibition of 5-Amino-1,3-dioxane-Linked Novel Bacterial Topoisomerase Inhibitors: Identification of a Lead with In Vivo Efficacy against MRSA.
J.Med.Chem., 64, 2021
7WSW
DownloadVisualize
BU of 7wsw by Molmil
Cryo-EM structure of the Potassium channel AKT1 from Arabidopsis thaliana
Descriptor: PHOSPHATIDYLETHANOLAMINE, POTASSIUM ION, Potassium channel AKT1
Authors:Yang, G.H, Lu, Y.M, Zhang, Y.M, Jia, Y.T, Li, X.M, Lei, J.L.
Deposit date:2022-02-02
Release date:2022-11-09
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structural basis for the activity regulation of a potassium channel AKT1 from Arabidopsis.
Nat Commun, 13, 2022
7XUF
DownloadVisualize
BU of 7xuf by Molmil
Cryo-EM structure of the AKT1-AtKC1 complex from Arabidopsis thaliana
Descriptor: POTASSIUM ION, Potassium channel AKT1, Potassium channel KAT3
Authors:Yang, G.H, Lu, Y.M, Jia, Y.T, Yang, F, Zhang, Y.M, Xu, X, Li, X.M, Lei, J.L.
Deposit date:2022-05-18
Release date:2022-11-09
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structural basis for the activity regulation of a potassium channel AKT1 from Arabidopsis.
Nat Commun, 13, 2022
8H2H
DownloadVisualize
BU of 8h2h by Molmil
Cryo-EM structure of a Group II Intron Complexed with its Reverse Transcriptase
Descriptor: Group II intron-encoded protein LtrA, LtrB, RNA (5'-R(P*CP*AP*CP*AP*UP*CP*CP*AP*UP*AP*AP*C)-3')
Authors:Liu, N, Dong, X.L, Qu, G.S, Wang, J, Wang, H.W, Belfort, M.
Deposit date:2022-10-06
Release date:2022-11-23
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Functionalized graphene grids with various charges for single-particle cryo-EM.
Nat Commun, 13, 2022
5UL1
DownloadVisualize
BU of 5ul1 by Molmil
The co-structure of 3-amino-6-(4-((1-(dimethylamino)propan-2-yl)sulfonyl)phenyl)-N-phenylpyrazine-2-carboxamide and a rationally designed PI3K-alpha mutant that mimics ATR
Descriptor: 3-amino-6-(4-{[(2S)-1-(dimethylamino)propan-2-yl]sulfonyl}phenyl)-N-phenylpyrazine-2-carboxamide, Phosphatidylinositol 3-kinase regulatory subunit alpha, Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform
Authors:Knapp, M.S, Elling, R.A, Mamo, M.
Deposit date:2017-01-23
Release date:2017-05-10
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (3 Å)
Cite:Rationally Designed PI3K alpha Mutants to Mimic ATR and Their Use to Understand Binding Specificity of ATR Inhibitors.
J. Mol. Biol., 429, 2017
5UKJ
DownloadVisualize
BU of 5ukj by Molmil
The co-structure of N,N-dimethyl-4-[(6R)-6-methyl-5-(1H-pyrrolo[2,3- b]pyridin-4-yl)-4,5,6,7-tetrahydropyrazolo[1,5- a]pyrazin-3-yl]benzenesulfonamide and a rationally designed PI3K-alpha mutant that mimics ATR
Descriptor: N,N-dimethyl-4-[(6R)-6-methyl-5-(1H-pyrrolo[2,3-b]pyridin-4-yl)-4,5,6,7-tetrahydropyrazolo[1,5-a]pyrazin-3-yl]benzenesulfonamide, Phosphatidylinositol 3-kinase regulatory subunit alpha, Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform
Authors:Knapp, M.S, Elling, R.A, Mamo, M.
Deposit date:2017-01-23
Release date:2017-05-10
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Rationally Designed PI3K alpha Mutants to Mimic ATR and Their Use to Understand Binding Specificity of ATR Inhibitors.
J. Mol. Biol., 429, 2017
5UK8
DownloadVisualize
BU of 5uk8 by Molmil
The co-structure of (R)-4-(6-(1-(cyclopropylsulfonyl)cyclopropyl)-2-(1H-indol-4-yl)pyrimidin-4-yl)-3-methylmorpholine and a rationally designed PI3K-alpha mutant that mimics ATR
Descriptor: (R)-4-(6-(1-(cyclopropylsulfonyl)cyclopropyl)-2-(1H-indol-4-yl)pyrimidin-4-yl)-3-methylmorpholine, Phosphatidylinositol 3-kinase regulatory subunit alpha, Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform
Authors:Knapp, M.S, Mamo, M, Elling, R.A.
Deposit date:2017-01-20
Release date:2017-06-14
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Rationally Designed PI3K alpha Mutants to Mimic ATR and Their Use to Understand Binding Specificity of ATR Inhibitors.
J. Mol. Biol., 429, 2017
5CMN
DownloadVisualize
BU of 5cmn by Molmil
FLRT3 LRR domain in complex with LPHN3 Olfactomedin domain
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Latrophilin-3, ...
Authors:Lu, Y, Salzman, G, Arac, D.
Deposit date:2015-07-17
Release date:2015-08-12
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.605 Å)
Cite:Structural Basis of Latrophilin-FLRT-UNC5 Interaction in Cell Adhesion.
Structure, 23, 2015
5CMP
DownloadVisualize
BU of 5cmp by Molmil
human FLRT3 LRR domain
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Leucine-rich repeat transmembrane protein FLRT3
Authors:Lu, Y, Salzman, G, Arac, D.
Deposit date:2015-07-17
Release date:2015-08-12
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.601 Å)
Cite:Structural Basis of Latrophilin-FLRT-UNC5 Interaction in Cell Adhesion.
Structure, 23, 2015

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon