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3BEC
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Crystal structure of E. coli penicillin-binding protein 5 in complex with a peptide-mimetic cephalosporin
分子名称: (2R)-2-[(R)-{[(6S)-6-amino-6-carboxyhexanoyl]amino}(carboxy)methyl]-5-methyl-3,6-dihydro-2H-1,3-thiazine-4-carboxylic acid, GLYCEROL, Penicillin-binding protein 5
著者Powell, A.J, Davies, C.
登録日2007-11-16
公開日2008-08-26
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal structures of complexes of bacterial DD-peptidases with peptidoglycan-mimetic ligands: the substrate specificity puzzle
J.Mol.Biol., 381, 2008
1NZO
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The crystal structure of wild type penicillin-binding protein 5 from E. coli
分子名称: BETA-MERCAPTOETHANOL, Penicillin-binding protein 5
著者Nicholas, R.A, Krings, S, Tomberg, J, Nicola, G, Davies, C.
登録日2003-02-19
公開日2004-01-13
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Crystal structure of wild-type penicillin-binding protein 5 from Escherichia coli: implications for deacylation of the acyl-enzyme complex.
J.Biol.Chem., 278, 2003
1NZU
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BU of 1nzu by Molmil
Wild-type penicillin-binding protein 5 from E. coli modified by beta-mercaptoethanol
分子名称: BETA-MERCAPTOETHANOL, Penicillin-binding protein 5
著者Nicola, G, Nicholas, R.A, Davies, C.
登録日2003-02-19
公開日2004-03-02
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献A large displacement of the SXN motif of Cys115-modified penicillin-binding protein 5 from Escherichia coli.
Biochem.J., 392, 2005
3BEB
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BU of 3beb by Molmil
Crystal structure of E. coli penicillin-binding protein 5 in complex with a peptide-mimetic penicillin
分子名称: (2R,4S)-2-[(1R)-1-{[(6S)-6-amino-6-carboxyhexanoyl]amino}-2-oxoethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid, GLYCEROL, Penicillin-binding protein 5
著者Heilemann, J, Powell, A.J, Davies, C.
登録日2007-11-16
公開日2008-08-26
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structures of complexes of bacterial DD-peptidases with peptidoglycan-mimetic ligands: the substrate specificity puzzle
J.Mol.Biol., 381, 2008
3UN7
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BU of 3un7 by Molmil
Crystal structure of PBPA from MYCOBACTERIUM TUBERCULOSIS
分子名称: Penicillin-binding protein A
著者Fedarovich, A, Davies, C.
登録日2011-11-15
公開日2012-10-24
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献The role of the beta5-alpha11 loop in the active-site dynamics of acylated penicillin-binding protein A from Mycobacterium tuberculosis
J.Mol.Biol., 418, 2012
5HM6
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BU of 5hm6 by Molmil
N-terminal domain of BfmR from Acinetobacter baumannii
分子名称: BfmR
著者Roth, B.R, Davies, C.
登録日2016-01-15
公開日2017-01-18
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献The Structure of the Biofilm-controlling Response Regulator BfmR from Acinetobacter baumannii Reveals Details of Its DNA-binding Mechanism.
J. Mol. Biol., 2018
6VBD
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BU of 6vbd by Molmil
Crystal structure of transpeptidase domain of PBP2 from Neisseria gonorrhoeae cephalosporin-resistant strain H041 acylated by ceftriaxone
分子名称: CEFOTAXIME, C3' cleaved, open, ...
著者Singh, A, Davies, C.
登録日2019-12-18
公開日2020-04-15
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Mutations in Neisseria gonorrhoeae penicillin-binding protein 2 associated with extended-spectrum cephalosporin resistance create an energetic barrier against acylation via restriction of protein dynamics
J.Biol.Chem., 2020
6VBL
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BU of 6vbl by Molmil
Crystal structure of the transpeptidase domain of PBP2 from the Neisseria gonorrhoeae cephalosporin decreased susceptibility strain 35/02
分子名称: Probable peptidoglycan D,D-transpeptidase PenA
著者Singh, A, Davies, C.
登録日2019-12-19
公開日2020-04-15
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.93 Å)
主引用文献Mutations in Neisseria gonorrhoeae penicillin-binding protein 2 associated with extended-spectrum cephalosporin resistance create an energetic barrier against acylation via restriction of protein dynamics
J.Biol.Chem., 2020
6XQV
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BU of 6xqv by Molmil
Crystal structure of the catalytic domain of PBP2 S310A from Neisseria gonorrhoeae in a pre-acylation complex with ceftriaxone
分子名称: CHLORIDE ION, Ceftriaxone, Probable peptidoglycan D,D-transpeptidase PenA, ...
著者Fenton, B.A, Zhou, P, Davies, C.
登録日2020-07-10
公開日2021-07-21
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Mutations in PBP2 from ceftriaxone-resistant Neisseria gonorrhoeae alter the dynamics of the beta 3-beta 4 loop to favor a low-affinity drug-binding state.
J.Biol.Chem., 297, 2021
6XQZ
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Crystal structure of the catalytic domain of PBP2 S310A from Neisseria gonorrhoeae at pH 7.5
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, Peptidoglycan D,D-transpeptidase PenA, ...
著者Fenton, B.A, Zhou, P, Davies, C.
登録日2020-07-10
公開日2021-07-21
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.04 Å)
主引用文献Mutations in PBP2 from ceftriaxone-resistant Neisseria gonorrhoeae alter the dynamics of the beta 3-beta 4 loop to favor a low-affinity drug-binding state.
J.Biol.Chem., 297, 2021
6XQY
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BU of 6xqy by Molmil
Crystal structure of the catalytic domain of PBP2 S310A from Neisseria gonorrhoeae at pH 9.5
分子名称: CHLORIDE ION, Probable peptidoglycan D,D-transpeptidase PenA
著者Fenton, B.A, Zhou, P, Davies, C.
登録日2020-07-10
公開日2021-07-21
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Mutations in PBP2 from ceftriaxone-resistant Neisseria gonorrhoeae alter the dynamics of the beta 3-beta 4 loop to favor a low-affinity drug-binding state.
J.Biol.Chem., 297, 2021
6XQX
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BU of 6xqx by Molmil
Crystal structure of the catalytic domain of PBP2 S310A from Neisseria gonorrhoeae with the H514A mutation at pH 7.5
分子名称: 1,2-ETHANEDIOL, Probable peptidoglycan D,D-transpeptidase PenA, SULFATE ION
著者Fenton, B.A, Zhou, P, Davies, C.
登録日2020-07-10
公開日2021-07-21
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Mutations in PBP2 from ceftriaxone-resistant Neisseria gonorrhoeae alter the dynamics of the beta 3-beta 4 loop to favor a low-affinity drug-binding state.
J.Biol.Chem., 297, 2021
4B2G
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BU of 4b2g by Molmil
Crystal Structure of an Indole-3-Acetic Acid Amido Synthase from Vitis vinifera Involved in Auxin Homeostasis
分子名称: GH3-1 AUXIN CONJUGATING ENZYME, MALONATE ION, [(2S,3R,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl] 2-(1H-indol-3-yl)ethyl hydrogen phosphate
著者Peat, T.S, Bottcher, C, Newman, J, Lucent, D, Cowieson, N, Davies, C.
登録日2012-07-16
公開日2012-12-19
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal Structure of an Indole-3-Acetic Acid Amido Synthetase from Grapevine Involved in Auxin Homeostasis.
Plant Cell, 24, 2012
4U3T
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BU of 4u3t by Molmil
Crystal structure of the transpeptidase domain of Neisseria gonorrhoeae penicillin-binding protein 2 derived from the penicillin-resistant strain 6140
分子名称: Penicillin-binding protein 2
著者Fedarovich, A, Davies, C.
登録日2014-07-22
公開日2014-12-03
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural Effect of the Asp345a Insertion in Penicillin-Binding Protein 2 from Penicillin-Resistant Strains of Neisseria gonorrhoeae.
Biochemistry, 53, 2014
1QXJ
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BU of 1qxj by Molmil
Crystal structure of native phosphoglucose isomerase from Pyrococcus furiosus
分子名称: Glucose-6-phosphate isomerase, NICKEL (II) ION
著者Swan, M.K, Solomons, J.T.G, Beeson, C.C, Hansen, T, Schonheit, P, Davies, C.
登録日2003-09-07
公開日2003-12-09
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural evidence for a hydride transfer mechanism of catalysis in phosphoglucose isomerase from Pyrococcus furiosus
J.Biol.Chem., 278, 2003
1QXR
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BU of 1qxr by Molmil
Crystal structure of phosphoglucose isomerase from Pyrococcus furiosus in complex with 5-phosphoarabinonate
分子名称: 5-PHOSPHOARABINONIC ACID, Glucose-6-phosphate isomerase, NICKEL (II) ION
著者Swan, M.K, Solomons, J.T.G, Beeson, C.C, Hansen, P, Schonheit, P, Davies, C.
登録日2003-09-08
公開日2003-12-09
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structural evidence for a hydride transfer mechanism of catalysis in phosphoglucose isomerase from Pyrococcus furiosus
J.Biol.Chem., 278, 2003
1QY4
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Crystal structure of phosphoglucose isomerase from Pyrococcus furiosus in complex with gluconate 6-phosphate
分子名称: 6-PHOSPHOGLUCONIC ACID, Glucose-6-phosphate isomerase, NICKEL (II) ION
著者Swan, M.K, Solomons, J.T.G, Beeson, C.C, Hansen, T, Schonheit, P, Davies, C.
登録日2003-09-09
公開日2003-12-09
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural evidence for a hydride transfer mechanism of catalysis in phosphoglucose isomerase from Pyrococcus furiosus
J.Biol.Chem., 278, 2003
1S3I
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BU of 1s3i by Molmil
Crystal structure of the N terminal hydrolase domain of 10-formyltetrahydrofolate dehydrogenase
分子名称: 10-formyltetrahydrofolate dehydrogenase, BETA-MERCAPTOETHANOL
著者Chumanevich, A.A, Krupenko, S.A, Davies, C.
登録日2004-01-13
公開日2004-01-27
最終更新日2021-10-27
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献The crystal structure of the hydrolase domain of 10-formyltetrahydrofolate dehydrogenase: mechanism of hydrolysis and its interplay with the dehydrogenase domain.
J.Biol.Chem., 279, 2004
1TZC
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BU of 1tzc by Molmil
Crystal structure of phosphoglucose/phosphomannose isomerase from Pyrobaculum aerophilum in complex with 5-phosphoarabinonate
分子名称: 5-PHOSPHOARABINONIC ACID, GLYCEROL, SULFATE ION, ...
著者Swan, M.K, Hansen, T, Schoenheit, P, Davies, C.
登録日2004-07-09
公開日2004-07-20
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献A novel phosphoglucose/phosphomannose isomease from the crenarchaeon Pyrobaculum aerophilum is a member of the PGI superfamily: structural evidence at 1.16 A resolution
J.Biol.Chem., 279, 2004
1TZB
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Crystal structure of native phosphoglucose/phosphomannose isomerase from Pyrobaculum aerophilum
分子名称: GLYCEROL, SULFATE ION, glucose-6-phosphate isomerase, ...
著者Swan, M.K, Hansen, T, Schoenheit, P, Davies, C.
登録日2004-07-09
公開日2004-07-20
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.16 Å)
主引用文献A novel phosphoglucose/phosphomannose isomease from the crenarchaeon Pyrobaculum aerophilum is a member of the PGI superfamily: structural evidence at 1.16 A resolution
J.Biol.Chem., 279, 2004
3LO7
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Crystal structure of PBPA from Mycobacterium tuberculosis
分子名称: Penicillin-binding protein A
著者Fedarovich, A, Davies, C.
登録日2010-02-03
公開日2010-03-23
最終更新日2017-11-01
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Unusual conformation of the SxN motif in the crystal structure of penicillin-binding protein A from Mycobacterium tuberculosis.
J.Mol.Biol., 398, 2010
3MZF
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Structure of penicillin-binding protein 5 from E. coli: imipenem acyl-enzyme complex
分子名称: (5R)-5-[(1S,2R)-1-formyl-2-hydroxypropyl]-3-[(2-{[(E)-iminomethyl]amino}ethyl)sulfanyl]-4,5-dihydro-1H-pyrrole-2-carbox ylic acid, D-alanyl-D-alanine carboxypeptidase dacA, GLYCEROL
著者Nicola, G, Tomberg, J, Pratt, R.F, Nicholas, R.A, Davies, C.
登録日2010-05-12
公開日2011-03-16
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Crystal structures of covalent complexes of beta-lactam antibiotics with Escherichia coli penicillin-binding protein 5: toward an understanding of antibiotic specificity
Biochemistry, 49, 2010
3MZD
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Structure of penicillin-binding protein 5 from E. coli: cloxacillin acyl-enzyme complex
分子名称: (2R,4S)-2-[(1S)-1-({[3-(2-chlorophenyl)-5-methyl-1,2-oxazol-4-yl]carbonyl}amino)-2-oxoethyl]-5,5-dimethyl-1,3-thiazolid ine-4-carboxylic acid, D-alanyl-D-alanine carboxypeptidase dacA, GLYCEROL
著者Nicola, G, Tomberg, J, Pratt, R.F, Nicholas, R.A, Davies, C.
登録日2010-05-12
公開日2011-03-16
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structures of covalent complexes of beta-lactam antibiotics with Escherichia coli penicillin-binding protein 5: toward an understanding of antibiotic specificity
Biochemistry, 49, 2010
3MZE
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Structure of penicillin-binding protein 5 from E.coli: cefoxitin acyl-enzyme complex
分子名称: (2R)-5-[(carbamoyloxy)methyl]-2-{(1S)-1-methoxy-2-oxo-1-[(thiophen-2-ylacetyl)amino]ethyl}-3,6-dihydro-2H-1,3-thiazine-4-carboxylic acid, D-alanyl-D-alanine carboxypeptidase dacA, GLYCEROL
著者Nicola, G, Tomberg, J, Pratt, R.F, Nicholas, R.A, Davies, C.
登録日2010-05-12
公開日2011-03-16
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structures of covalent complexes of beta-lactam antibiotics with Escherichia coli penicillin-binding protein 5: toward an understanding of antibiotic specificity
Biochemistry, 49, 2010
6P56
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Crystal structure of the transpeptidase domain of a T498A mutant of PBP2 from Neisseria gonorrhoeae
分子名称: PHOSPHATE ION, peptidoglycan D,D-transpeptidase PenA
著者Singh, A, Davies, C.
登録日2019-05-29
公開日2019-08-07
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.92 Å)
主引用文献Recognition of the beta-lactam carboxylate triggers acylation ofNeisseria gonorrhoeaepenicillin-binding protein 2.
J.Biol.Chem., 294, 2019

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