Loading
PDBj
English日本語简体中文繁體中文한국어
✖
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
4OFA
DownloadVisualize
BU of 4ofa by Molmil
Structural basis for thymine glycosylase activity on T:O6-methylG mismatch by methyl-CpG binding domain protein 4: Implications for roles of Arg468 in mismatch recognition and catalysis
Descriptor: 12-mer DNA(G), 12-mer DNA(T), MAGNESIUM ION, ...
Authors:Ouzon-Shubeita, H, Lin, Y.-L, Lee, S.
Deposit date:2014-01-14
Release date:2015-04-22
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structure of MBD4 bound to G:T mispair DNA
To be Published
4NM1
DownloadVisualize
BU of 4nm1 by Molmil
Structure of human DNA polymerase beta complexed with a nicked DNA containing a 8BrG-C at N-1 position and G-C at N position
Descriptor: 5'-D(*CP*CP*GP*AP*CP*GP*(BGM)P*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*CP*C)-3', 5'-D(P*GP*TP*CP*GP*G)-3', ...
Authors:Koag, M.-C, Min, K, Monzingo, A.F, Lee, S.
Deposit date:2013-11-14
Release date:2014-01-22
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.415 Å)
Cite:Structural basis for promutagenicity of 8-halogenated Guanine.
J.Biol.Chem., 289, 2014
4NM2
DownloadVisualize
BU of 4nm2 by Molmil
Structure of human DNA polymerase beta complexed with a nicked DNA containing a 8BrG-G at N-1 position and G-C at N position
Descriptor: 5'-D(*CP*CP*GP*AP*CP*GP*(BGM)P*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*GP*C)-3', 5'-D(P*GP*TP*CP*GP*G)-3', ...
Authors:Koag, M.-C, Min, K, Monzingo, A.F, Lee, S.
Deposit date:2013-11-14
Release date:2014-01-22
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.524 Å)
Cite:Structural basis for promutagenicity of 8-halogenated Guanine.
J.Biol.Chem., 289, 2014
4NLK
DownloadVisualize
BU of 4nlk by Molmil
Structure of human DNA polymerase beta complexed with 8BrG in the template base-paired with incoming non-hydrolyzable CTP
Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, 5'-D(*CP*CP*GP*AP*CP*(BGM)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3', ...
Authors:Koag, M.-C, Min, K, Monzingo, A.F, Lee, S.
Deposit date:2013-11-14
Release date:2014-01-22
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.494 Å)
Cite:Structural basis for promutagenicity of 8-halogenated Guanine.
J.Biol.Chem., 289, 2014
2AG4
DownloadVisualize
BU of 2ag4 by Molmil
Crystal Structure Analysis of GM2-activator protein complexed with phosphatidylcholine
Descriptor: (7R)-4,7-DIHYDROXY-N,N,N-TRIMETHYL-10-OXO-3,5,9-TRIOXA-4-PHOSPHAHEPTACOSAN-1-AMINIUM 4-OXIDE, Ganglioside GM2 activator, ISOPROPYL ALCOHOL, ...
Authors:Wright, C.S, Mi, L.Z, Lee, S, Rastinejad, F.
Deposit date:2005-07-26
Release date:2005-10-25
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure Analysis of Phosphatidylcholine-GM2-Activator Product Complexes: Evidence for Hydrolase Activity.
Biochemistry, 44, 2005
4OFH
DownloadVisualize
BU of 4ofh by Molmil
Structural basis for thymine glycosylase activity on T:O6-methylG mismatch by methyl-CpG binding domain protein 4: Implications for roles of Arg468 in mismatch recognition and catalysis
Descriptor: 12-mer DNA(O6MeG), 12-mer DNA(T), MAGNESIUM ION, ...
Authors:Ouzon-Shubeita, H, Lin, Y.-L, Lee, S.
Deposit date:2014-01-14
Release date:2015-04-22
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.22 Å)
Cite:Structure of MBD4 bound to O6MeG:T mispair DNA
To be Published
2AF9
DownloadVisualize
BU of 2af9 by Molmil
Crystal Structure analysis of GM2-Activator protein complexed with phosphatidylcholine
Descriptor: Ganglioside GM2 activator, ISOPROPYL ALCOHOL, LAURIC ACID, ...
Authors:Wright, C.S, Mi, L.Z, Lee, S, Rastinejad, F.
Deposit date:2005-07-25
Release date:2005-10-25
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure Analysis of Phosphatidylcholine-GM2-Activator Product Complexes: Evidence for Hydrolase Activity.
Biochemistry, 44, 2005
7KLF
DownloadVisualize
BU of 7klf by Molmil
Ternary structure of Dpo4 bound to G in the template base paired with incoming dCTP
Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*CP*TP*AP*AP*CP*GP*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'), ...
Authors:Koag, M.-C, Lee, S.
Deposit date:2020-10-30
Release date:2021-11-03
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.301 Å)
Cite:Structure of human DNA polymerase beta complexed with 8OA in the template base paired with incoming non-hydrolyzable ATP
To Be Published
7KLE
DownloadVisualize
BU of 7kle by Molmil
Ternary structure of Dpo4 bound to N7mG in the template base paired with incoming dCTP
Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*CP*TP*AP*AP*CP*(FMG)P*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'), ...
Authors:Koag, M.-C, Lee, S.
Deposit date:2020-10-30
Release date:2021-11-03
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.003 Å)
Cite:Structure of human DNA polymerase beta complexed with 8OA in the template base paired with incoming non-hydrolyzable ATP
To Be Published
7TFM
DownloadVisualize
BU of 7tfm by Molmil
Atomic Structure of the Leishmania spp. Hsp100 N-Domain
Descriptor: ATP-dependent Clp protease subunit, heat shock protein 100 (HSP100), GLYCEROL
Authors:Mercado, J.M, Lee, S, Chang, C, Sung, N, Soong, L, Catic, A, Tsai, F.T.F.
Deposit date:2022-01-06
Release date:2022-02-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.055 Å)
Cite:Atomic structure of the Leishmania spp. Hsp100 N-domain.
Proteins, 90, 2022
2N8V
DownloadVisualize
BU of 2n8v by Molmil
An NMR/SAXS structure of the PKI domain of the honeybee dicistrovirus, Israeli acute paralysis virus (IAPV) IRES
Descriptor: RNA (70-MER)
Authors:Au, H.H, Cornilescu, G, Mouzakis, K.D, Burke, J.E, Ren, Q, Lee, S, Butcher, S.E, Jan, E.
Deposit date:2015-10-27
Release date:2015-11-11
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Global shape mimicry of tRNA within a viral internal ribosome entry site mediates translational reading frame selection.
Proc.Natl.Acad.Sci.USA, 112, 2015
4J4K
DownloadVisualize
BU of 4j4k by Molmil
Crystal structure of glucose isomerase
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETATE ION, Xylose isomerase, ...
Authors:Kim, M.K, An, Y.J, Lee, S, Jeong, C.S, Cha, S.S.
Deposit date:2013-02-07
Release date:2014-04-30
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of glucose isomerase
To be Published
2F66
DownloadVisualize
BU of 2f66 by Molmil
Structure of the ESCRT-I endosomal trafficking complex
Descriptor: Protein SRN2, SULFATE ION, Suppressor protein STP22 of temperature-sensitive alpha-factor receptor and arginine permease, ...
Authors:Kostelansky, M.S, Lee, S, Kim, J, Hurley, J.H.
Deposit date:2005-11-28
Release date:2006-04-18
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural and functional organization of the ESCRT-I trafficking complex.
Cell(Cambridge,Mass.), 125, 2006
7L69
DownloadVisualize
BU of 7l69 by Molmil
Crystal structure of human polymerase eta complexed with syn N7-benzylguanine
Descriptor: DNA (5'-D(*AP*GP*TP*GP*TP*GP*AP*G)-3'), DNA (5'-D(*CP*AP*TP*(7BG)P*CP*TP*CP*AP*CP*AP*CP*T)-3'), DNA polymerase eta
Authors:Jung, H, Lee, S.
Deposit date:2020-12-23
Release date:2022-01-05
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Crystal structure of human polymerase eta complexed with syn N7-benzylguanine
To Be Published
7MZ2
DownloadVisualize
BU of 7mz2 by Molmil
Structure of human DNA polymerase beta complexed with dzA at N-1 of the template base paired with incoming dTTP
Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, DNA (5'-D(*CP*CP*GP*AP*CP*GP*(4DU)P*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*T)-3'), ...
Authors:Koag, M.-C, Lee, S.
Deposit date:2021-05-23
Release date:2022-05-25
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.088 Å)
Cite:Structure of human DNA polymerase beta complexed with dzA at N-1 of the template base paired with incoming dTTP
To Be Published
7MZ1
DownloadVisualize
BU of 7mz1 by Molmil
Structure of human DNA polymerase beta complexed with dzA in the template base paired with incoming non-hydrolyzable TTP
Descriptor: 5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]thymidine, DNA (5'-D(*CP*CP*GP*AP*CP*(4DU)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3'), ...
Authors:Koag, M.-C, Lee, S.
Deposit date:2021-05-23
Release date:2022-05-25
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.175 Å)
Cite:Structure of human DNA polymerase beta complexed with dzA in the template base paired with incoming non-hydrolyzable TTP
To Be Published
7MZ0
DownloadVisualize
BU of 7mz0 by Molmil
Structure of human DNA polymerase beta complexed with dzA as the template base in a 1-nucleotide gapped DNA
Descriptor: DNA (5'-D(*CP*CP*GP*AP*CP*(4DU)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3'), DNA (5'-D(P*GP*TP*CP*GP*G)-3'), ...
Authors:Koag, M.-C, Lee, S.
Deposit date:2021-05-23
Release date:2022-05-25
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.021 Å)
Cite:Structure Of Human Dna Polymerase Beta Complexed With dzA As The Template Base In A 1-Nucleotide Gapped Dna
To Be Published
7MZ4
DownloadVisualize
BU of 7mz4 by Molmil
Structure of human DNA polymerase beta complexed with 3-deaza-3-methyladenine (3dMeA) in the template base paired with incoming dTTP
Descriptor: 5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]thymidine, DNA (5'-D(*CP*CP*GP*AP*CP*(DZM)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3'), ...
Authors:Koag, M.-C, Lee, S.
Deposit date:2021-05-24
Release date:2022-06-01
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.076 Å)
Cite:Structure of human DNA polymerase beta complexed with 3-deaza-3-methyladenine (3dMeA) in the template base paired with incoming dTTP
To Be Published
7MZ8
DownloadVisualize
BU of 7mz8 by Molmil
Structure of human DNA polymerase beta complexed with 3-deaza-3-methyladenine (3dMeA) at N-1 of the template base paired with incoming dTTP
Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, DNA (5'-D(*CP*CP*GP*AP*CP*GP*(DZM)P*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*T)-3'), ...
Authors:Koag, M.-C, Lee, S.
Deposit date:2021-05-24
Release date:2022-06-01
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure Of Human Dna Polymerase Beta Complexed With 8Oa As The Template Base In A 1-Nucleotide Gapped Dna
To Be Published
7MZ3
DownloadVisualize
BU of 7mz3 by Molmil
Structure of human DNA polymerase beta complexed with 3-deaza-3-methyladenine (3dMeA) as the template base in a 1-nucleotide gapped DNA
Descriptor: DNA (5'-D(*CP*CP*GP*AP*CP*(DZM)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3'), DNA (5'-D(P*GP*TP*CP*GP*G)-3'), ...
Authors:Koag, M.-C, Lee, S.
Deposit date:2021-05-24
Release date:2022-06-01
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.418 Å)
Cite:Structure of human DNA polymerase beta complexed with 3-deaza-3-methyladenine (3dMeA) as the template base in a 1-nucleotide gapped DNA
To Be Published
2F6M
DownloadVisualize
BU of 2f6m by Molmil
Structure of a Vps23-C:Vps28-N subcomplex
Descriptor: DECYLAMINE-N,N-DIMETHYL-N-OXIDE, MAGNESIUM ION, Suppressor protein STP22 of temperature-sensitive alpha-factor receptor and arginine permease, ...
Authors:Kostelansky, M.S, Lee, S, Kim, J, Hurley, J.H.
Deposit date:2005-11-29
Release date:2006-04-18
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural and functional organization of the ESCRT-I trafficking complex.
Cell(Cambridge,Mass.), 125, 2006
4JCH
DownloadVisualize
BU of 4jch by Molmil
OSH4 bound to an electrophilic oxysterol
Descriptor: (3beta,9beta,22R,25R)-3-hydroxyfurost-5-en-27-yl propanoate, Protein KES1
Authors:Koag, M.C, Kou, Y.I, Monzingo, A.F, Lee, S.
Deposit date:2013-02-21
Release date:2014-03-26
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure of OSH4 bound to an electrophilic oxysterol
To be Published
7EPP
DownloadVisualize
BU of 7epp by Molmil
Recombinant Alfalfa Mosaic virus coat protein virus-like particle (rAMV-CP VLP)
Descriptor: Capsid protein
Authors:Jeong, H, Lee, S.
Deposit date:2021-04-27
Release date:2021-11-17
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (2.4 Å)
Cite:Characterization of alfalfa mosaic virus capsid protein using Cryo-EM.
Biochem.Biophys.Res.Commun., 559, 2021
5EDW
DownloadVisualize
BU of 5edw by Molmil
Ternary structure of Dpo4 bound to G in the template base paired with incoming dTTP
Descriptor: CALCIUM ION, DNA (5'-D(*CP*TP*AP*AP*CP*GP*GP*GP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'), DNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*C)-3'), ...
Authors:Koag, M.-C, Lee, S.
Deposit date:2015-10-22
Release date:2016-11-02
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.62 Å)
Cite:Structure of Dpo4 DNA polymerase replicating across the genotoxic N7-methylguanine lesion
To Be Published
5EOZ
DownloadVisualize
BU of 5eoz by Molmil
Mutagenicity of 7-Benzyl guanine lesion and Replication by Human DNA Polymerase beta
Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, DNA (5'-D(*CP*CP*GP*AP*CP*(GFL)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3'), ...
Authors:Koag, M.C, Lee, S.
Deposit date:2015-11-10
Release date:2016-11-23
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.088 Å)
Cite:Structural and kinetic studies of the effect of guanine-N7 alkylation and metal cofactors on DNA replication.
Biochemistry, 2018

226262

PDB entries from 2024-10-16

PDB statisticsPDBj update infoContact PDBjnumon