Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
6C7R
DownloadVisualize
BU of 6c7r by Molmil
BRD4 BD1 in complex with compound CF53
Descriptor: Bromodomain-containing protein 4, N-(3-cyclopropyl-1-methyl-1H-pyrazol-5-yl)-7-(3,5-dimethyl-1,2-oxazol-4-yl)-6-methoxy-2-methyl-9H-pyrimido[4,5-b]indol-4-amine
Authors:Meagher, J.L, Stuckey, J.A.
Deposit date:2018-01-23
Release date:2018-08-01
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structure-Based Discovery of CF53 as a Potent and Orally Bioavailable Bromodomain and Extra-Terminal (BET) Bromodomain Inhibitor.
J. Med. Chem., 61, 2018
6MVR
DownloadVisualize
BU of 6mvr by Molmil
Structure of a bacterial ALDH16
Descriptor: Aldehyde dehydrogenase, GLYCEROL, SULFATE ION
Authors:Tanner, J.J, Liu, L.
Deposit date:2018-10-28
Release date:2018-12-26
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal Structure of Aldehyde Dehydrogenase 16 Reveals Trans-Hierarchical Structural Similarity and a New Dimer.
J. Mol. Biol., 431, 2019
8SBN
DownloadVisualize
BU of 8sbn by Molmil
Crystal Structure of Dephospho-CoA kinase from Klebsiella aerogenes (P21 Form 1)
Descriptor: CHLORIDE ION, Dephospho-CoA kinase, GLYCEROL, ...
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2023-04-03
Release date:2023-04-12
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Crystal Structure of Dephospho-CoA kinase from Klebsiella aerogenes (P21 Form 1)
To be published
6JIV
DownloadVisualize
BU of 6jiv by Molmil
SspE crystal structure
Descriptor: SspE protein
Authors:Bing, Y.Z, Yang, H.G.
Deposit date:2019-02-23
Release date:2020-03-25
Last modified:2020-07-08
Method:X-RAY DIFFRACTION (3.31 Å)
Cite:SspABCD-SspE is a phosphorothioation-sensing bacterial defence system with broad anti-phage activities.
Nat Microbiol, 5, 2020
8SLF
DownloadVisualize
BU of 8slf by Molmil
Crystal Structure of Glycine tRNA ligase from Mycobacterium thermoresistibile (AMP bound)
Descriptor: ADENOSINE MONOPHOSPHATE, Glycine--tRNA ligase, MAGNESIUM ION, ...
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2023-04-21
Release date:2023-05-03
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal Structure of Glycine tRNA ligase from Mycobacterium thermoresistibile (AMP bound)
To be published
8SLD
DownloadVisualize
BU of 8sld by Molmil
Crystal Structure of Glycine tRNA ligase from Mycobacterium thermoresistibile (Apo)
Descriptor: Glycine--tRNA ligase, MAGNESIUM ION
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2023-04-21
Release date:2023-05-03
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Crystal Structure of Glycine tRNA ligase from Mycobacterium thermoresistibile (Apo)
To be published
7EQL
DownloadVisualize
BU of 7eql by Molmil
Crystal structure of (+)-pulegone reductase from Mentha piperita
Descriptor: (+)-pulegone reductase
Authors:Lin, W.
Deposit date:2021-05-03
Release date:2021-09-29
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.72 Å)
Cite:Functional Characterization and Structural Insights Into Stereoselectivity of Pulegone Reductase in Menthol Biosynthesis.
Front Plant Sci, 12, 2021
8SLH
DownloadVisualize
BU of 8slh by Molmil
Crystal Structure of Glycine tRNA ligase from Mycobacterium thermoresistibile (AMP bound, hexagonal form)
Descriptor: ADENOSINE MONOPHOSPHATE, Glycine--tRNA ligase, MAGNESIUM ION
Authors:Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2023-04-21
Release date:2023-05-03
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (3.05 Å)
Cite:Crystal Structure of Glycine tRNA ligase from Mycobacterium thermoresistibile (AMP bound, hexagonal form)
To be published
8UN4
DownloadVisualize
BU of 8un4 by Molmil
KRAS-G13D-GDP in complex with Cpd36 ((E)-1-((3S)-4-(7-(6-amino-4-methyl-3-(trifluoromethyl)pyridin-2-yl)-6-chloro-8-fluoro-2-(((S)-2-methylenetetrahydro-1H-pyrrolizin-7a(5H)-yl)methoxy)quinazolin-4-yl)-3-methylpiperazin-1-yl)-3-(4-((dimethylamino)methyl)-5-methylpyridin-2-yl)prop-2-en-1-one)
Descriptor: (2E)-1-{(3S)-4-[(7M)-7-[6-amino-4-methyl-3-(trifluoromethyl)pyridin-2-yl]-6-chloro-8-fluoro-2-{[(4R,7aS)-2-methylidenetetrahydro-1H-pyrrolizin-7a(5H)-yl]methoxy}quinazolin-4-yl]-3-methylpiperazin-1-yl}-3-{4-[(dimethylamino)methyl]-5-methylpyridin-2-yl}prop-2-en-1-one, GTPase KRas, GUANOSINE-5'-DIPHOSPHATE, ...
Authors:Ultsch, M.H.
Deposit date:2023-10-18
Release date:2023-12-20
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Structure-Based Design and Evaluation of Reversible KRAS G13D Inhibitors.
Acs Med.Chem.Lett., 15, 2024
6K6L
DownloadVisualize
BU of 6k6l by Molmil
YGL082W-catalytic domain
Descriptor: pseudo deubiquitinase
Authors:Lu, L.N, Wang, F.
Deposit date:2019-06-03
Release date:2019-07-03
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Inactivity of YGL082W in vitro due to impairment of conformational change in the catalytic center loop
Sci China Chem, 2019
7CMZ
DownloadVisualize
BU of 7cmz by Molmil
Crystal Structure of BRCT7/8 in Complex with the APS Motif of PHF8
Descriptor: DNA topoisomerase 2-binding protein 1, Histone lysine demethylase PHF8, POTASSIUM ION, ...
Authors:Che, S.Y, Ma, S, Cao, C, Yao, Z, Shi, L, Yang, N.
Deposit date:2020-07-29
Release date:2021-03-17
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.695 Å)
Cite:PHF8-promoted TOPBP1 demethylation drives ATR activation and preserves genome stability.
Sci Adv, 7, 2021
6ISU
DownloadVisualize
BU of 6isu by Molmil
Crystal structure of Lys27-linked di-ubiquitin in complex with its selective interacting protein UCHL3
Descriptor: Ubiquitin, Ubiquitin carboxyl-terminal hydrolase isozyme L3
Authors:Ding, S, Pan, M, Zheng, Q, Ren, Y, Hong, D.
Deposit date:2018-11-19
Release date:2019-02-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.866 Å)
Cite:Chemical Protein Synthesis Enabled Mechanistic Studies on the Molecular Recognition of K27-linked Ubiquitin Chains.
Angew. Chem. Int. Ed. Engl., 58, 2019
5RGB
DownloadVisualize
BU of 5rgb by Molmil
Crystal Structure of Kemp Eliminase HG3.3b with bound transition state analogue, 277K
Descriptor: 6-NITROBENZOTRIAZOLE, Kemp Eliminase HG3.3b, SULFATE ION
Authors:Broom, A, Rakotoharisoa, R.V, Thompson, M.C, Fraser, J.S, Chica, R.A.
Deposit date:2020-03-19
Release date:2020-07-22
Last modified:2021-05-12
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:Ensemble-based enzyme design can recapitulate the effects of laboratory directed evolution in silico.
Nat Commun, 11, 2020
5RGD
DownloadVisualize
BU of 5rgd by Molmil
Crystal Structure of Kemp Eliminase HG3.14 with bound transition state analogue, 277K
Descriptor: 6-NITROBENZOTRIAZOLE, Kemp Eliminase HG3.14, SULFATE ION
Authors:Broom, A, Rakotoharisoa, R.V, Thompson, M.C, Fraser, J.S, Chica, R.A.
Deposit date:2020-03-19
Release date:2020-07-22
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Ensemble-based enzyme design can recapitulate the effects of laboratory directed evolution in silico.
Nat Commun, 11, 2020
5RG4
DownloadVisualize
BU of 5rg4 by Molmil
Crystal Structure of Kemp Eliminase HG3 in unbound state, 277K
Descriptor: ACETATE ION, Kemp Eliminase HG3, SULFATE ION
Authors:Broom, A, Rakotoharisoa, R.V, Thompson, M.C, Fraser, J.S, Chica, R.A.
Deposit date:2020-03-19
Release date:2020-07-22
Last modified:2021-05-12
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Ensemble-based enzyme design can recapitulate the effects of laboratory directed evolution in silico.
Nat Commun, 11, 2020
5RG7
DownloadVisualize
BU of 5rg7 by Molmil
Crystal Structure of Kemp Eliminase HG3.14 in unbound state, 277K
Descriptor: Kemp Eliminase HG3, SULFATE ION
Authors:Broom, A, Rakotoharisoa, R.V, Thompson, M.C, Fraser, J.S, Chica, R.A.
Deposit date:2020-03-19
Release date:2020-07-22
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Ensemble-based enzyme design can recapitulate the effects of laboratory directed evolution in silico.
Nat Commun, 11, 2020
5RG9
DownloadVisualize
BU of 5rg9 by Molmil
Crystal Structure of Kemp Eliminase HG4 in unbound state, 277K
Descriptor: ACETATE ION, Kemp Eliminase HG4, SULFATE ION
Authors:Broom, A, Rakotoharisoa, R.V, Thompson, M.C, Fraser, J.S, Chica, R.A.
Deposit date:2020-03-19
Release date:2020-07-22
Last modified:2021-05-12
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Ensemble-based enzyme design can recapitulate the effects of laboratory directed evolution in silico.
Nat Commun, 11, 2020
5RGE
DownloadVisualize
BU of 5rge by Molmil
Crystal Structure of Kemp Eliminase HG3.17 with bound transition state analog, 277K
Descriptor: 6-NITROBENZOTRIAZOLE, Kemp Eliminase HG3
Authors:Broom, A, Rakotoharisoa, R.V, Thompson, M.C, Fraser, J.S, Chica, R.A.
Deposit date:2020-03-19
Release date:2020-07-22
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Ensemble-based enzyme design can recapitulate the effects of laboratory directed evolution in silico.
Nat Commun, 11, 2020
5RGF
DownloadVisualize
BU of 5rgf by Molmil
Crystal Structure of Kemp Eliminase HG4 with bound transition state analogue, 277K
Descriptor: 6-NITROBENZOTRIAZOLE, Kemp Eliminase HG3, SULFATE ION
Authors:Broom, A, Rakotoharisoa, R.V, Thompson, M.C, Fraser, J.S, Chica, R.A.
Deposit date:2020-03-19
Release date:2020-07-22
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.46 Å)
Cite:Ensemble-based enzyme design can recapitulate the effects of laboratory directed evolution in silico.
Nat Commun, 11, 2020
7E3O
DownloadVisualize
BU of 7e3o by Molmil
Crystal structure of SARS-CoV-2 receptor binding domain in complex with neutralizing antibody nCoV617
Descriptor: Spike protein S1, nCoV617 Heigh Chain, nCoV617 Light Chain
Authors:Chen, S.D, Yang, M.
Deposit date:2021-02-09
Release date:2021-09-15
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:Structural Basis of a Human Neutralizing Antibody Specific to the SARS-CoV-2 Spike Protein Receptor-Binding Domain.
Microbiol Spectr, 9, 2021
7DEO
DownloadVisualize
BU of 7deo by Molmil
Crystal structure of SARS-CoV-2 RBD in complex with a neutralizing antibody scFv
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Spike protein S1, ...
Authors:Fu, D, Zhang, G, Li, X, Rao, Z, Guo, Y.
Deposit date:2020-11-04
Release date:2021-03-31
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis for SARS-CoV-2 neutralizing antibodies with novel binding epitopes.
Plos Biol., 19, 2021
7DET
DownloadVisualize
BU of 7det by Molmil
Crystal structure of SARS-CoV-2 RBD in complex with a neutralizing antibody scFv
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike protein S1, antibody scFv
Authors:Wang, Y, Zhang, G, Li, X, Rao, Z, Guo, Y.
Deposit date:2020-11-05
Release date:2021-03-31
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural basis for SARS-CoV-2 neutralizing antibodies with novel binding epitopes.
Plos Biol., 19, 2021
7DEU
DownloadVisualize
BU of 7deu by Molmil
Crystal structure of SARS-CoV-2 RBD in complex with a neutralizing antibody scFv
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike protein S1, antibody scFv
Authors:Zhang, Z, Zhang, G, Li, X, Rao, Z, Guo, Y.
Deposit date:2020-11-05
Release date:2021-03-31
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis for SARS-CoV-2 neutralizing antibodies with novel binding epitopes.
Plos Biol., 19, 2021
5UFI
DownloadVisualize
BU of 5ufi by Molmil
DCN1 bound to DI-591
Descriptor: DCN1-like protein 1, N-[(1S)-1-cyclohexyl-2-{[3-(morpholin-4-yl)propanoyl]amino}ethyl]-N~2~-propanoyl-3-[6-(propan-2-yl)-1,3-benzothiazol-2-yl]-L-alaninamide
Authors:Stuckey, J.
Deposit date:2017-01-04
Release date:2017-11-01
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.58 Å)
Cite:A potent small-molecule inhibitor of the DCN1-UBC12 interaction that selectively blocks cullin 3 neddylation.
Nat Commun, 8, 2017
5V3S
DownloadVisualize
BU of 5v3s by Molmil
Crystal structure of IP-1A from Alcaligenes faecalis at 1.8A resolution
Descriptor: Two-component insecticidal protein 16 kDa unit
Authors:Yalpani, N, Altier, D, Guan, R, Montelione, G.
Deposit date:2017-03-08
Release date:2017-06-14
Last modified:2017-06-21
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:An Alcaligenes strain emulates Bacillus thuringiensis producing a binary protein that kills corn rootworm through a mechanism similar to Cry34Ab1/Cry35Ab1.
Sci Rep, 7, 2017

222415

數據於2024-07-10公開中

PDB statisticsPDBj update infoContact PDBjnumon