Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
7AQH
DownloadVisualize
BU of 7aqh by Molmil
Cell wall binding domain of the Staphylococcal phage 2638A endolysin
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ORF007
Authors:Dunne, M, Sobieraj, A, Ernst, P, Mittl, P.R.E, Pluckthun, A, Loessner, M.J.
Deposit date:2020-10-21
Release date:2020-12-02
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:Cell wall binding domain of the Staphylococcal phage 2638A endolysin
To Be Published
5JMC
DownloadVisualize
BU of 5jmc by Molmil
Receptor binding domain of Botulinum neurotoxin A in complex with rat SV2C
Descriptor: Botulinum neurotoxin type A, Synaptic vesicle glycoprotein 2C
Authors:Yao, G, Zhang, S, Mahrhold, S, Lam, K, Stern, D, Bagramyan, K, Perry, K, Kalkum, M, Rummel, A, Dong, M, Jin, R.
Deposit date:2016-04-28
Release date:2016-06-15
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.64 Å)
Cite:N-linked glycosylation of SV2 is required for binding and uptake of botulinum neurotoxin A.
Nat.Struct.Mol.Biol., 23, 2016
3KIN
DownloadVisualize
BU of 3kin by Molmil
KINESIN (DIMERIC) FROM RATTUS NORVEGICUS
Descriptor: ADENOSINE-5'-DIPHOSPHATE, KINESIN HEAVY CHAIN
Authors:Kozielski, F, Sack, S, Marx, A, Thormahlen, M, Schonbrunn, E, Biou, V, Thompson, A, Mandelkow, E.-M, Mandelkow, E.
Deposit date:1997-08-25
Release date:1998-10-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:The crystal structure of dimeric kinesin and implications for microtubule-dependent motility.
Cell(Cambridge,Mass.), 91, 1997
8C63
DownloadVisualize
BU of 8c63 by Molmil
Crystal structure of arsenoplatin-1/B-DNA adduct obtained upon 4 h of soaking
Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION, PLATINUM (II) ION, ...
Authors:Troisi, R, Tito, G, Ferraro, G, Sica, F, Merlino, A.
Deposit date:2023-01-11
Release date:2024-01-31
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:On the mechanism of action of arsenoplatins: arsenoplatin-1 binding to a B-DNA dodecamer.
Dalton Trans, 53, 2024
5MEO
DownloadVisualize
BU of 5meo by Molmil
Human Leukocyte Antigen presenting ILGKFLHRL
Descriptor: 1,2-ETHANEDIOL, Beta-2-microglobulin, GLYCEROL, ...
Authors:Rizkallah, P.J, Lloyd, A, Crowther, M, Cole, D.K, Sewell, A.K.
Deposit date:2016-11-16
Release date:2016-12-07
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.772 Å)
Cite:Structural Mechanism Underpinning Cross-reactivity of a CD8+ T-cell Clone That Recognizes a Peptide Derived from Human Telomerase Reverse Transcriptase.
J. Biol. Chem., 292, 2017
3O1B
DownloadVisualize
BU of 3o1b by Molmil
CRYSTAL STRUCTURE OF DIMERIC KLHXK1 IN CRYSTAL FORM II
Descriptor: Hexokinase
Authors:Kuettner, E.B, Kettner, K, Keim, A, Kriegel, T.M, Strater, N.
Deposit date:2010-07-21
Release date:2010-10-13
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal Structure of Hexokinase KlHxk1 of Kluyveromyces lactis: A MOLECULAR BASIS FOR UNDERSTANDING THE CONTROL OF YEAST HEXOKINASE FUNCTIONS VIA COVALENT MODIFICATION AND OLIGOMERIZATION.
J.Biol.Chem., 285, 2010
5C1Z
DownloadVisualize
BU of 5c1z by Molmil
Parkin (UblR0RBR)
Descriptor: CHLORIDE ION, E3 ubiquitin-protein ligase parkin, GLYCEROL, ...
Authors:kumar, A, Aguirre, J.D, Condos, T.E.C, Martinez-Torres, R.J, Chaugule, V.K, Toth, R, Sundaramoorthy, R, Mercier, P, Knebel, A, Spratt, D.E, Barber, K.R, Shaw, G.S, Walden, H.
Deposit date:2015-06-15
Release date:2015-07-29
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Disruption of the autoinhibited state primes the E3 ligase parkin for activation and catalysis.
Embo J., 34, 2015
7N2W
DownloadVisualize
BU of 7n2w by Molmil
The crystal structure of an FMN-dependent NADH-azoreductase, AzoA in complex with Red 40
Descriptor: 6-hydroxy-5-[(E)-(2-methoxy-5-methyl-4-sulfophenyl)diazenyl]naphthalene-2-sulfonic acid, FLAVIN MONONUCLEOTIDE, FMN dependent NADH:quinone oxidoreductase
Authors:Arcinas, A.J, Fedorov, E, Kelly, L, Almo, S.C, Ghosh, A.
Deposit date:2021-05-30
Release date:2022-06-01
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Uncovering a novel mechanism of enzyme activation in multimeric azoreductases
To Be Published
3O20
DownloadVisualize
BU of 3o20 by Molmil
Electron transfer complexes:experimental mapping of the Redox-dependent Cytochrome C electrostatic surface
Descriptor: Cytochrome c, HEME C, NITRATE ION
Authors:De March, M, De Zorzi, R, Casini, A, Messori, L, Geremia, S, Demitri, N, Gabbiani, C, Guerri, A.
Deposit date:2010-07-22
Release date:2012-01-25
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Nitrate as a probe of cytochrome c surface: crystallographic identification of crucial "hot spots" for protein-protein recognition.
J. Inorg. Biochem., 135, 2014
5JD9
DownloadVisualize
BU of 5jd9 by Molmil
Bacillus cereus CotH kinase
Descriptor: 1,2-ETHANEDIOL, MAGNESIUM ION, Spore coat protein H
Authors:Tomchick, D.R, Tagliabracci, V.S, Sreelatha, A.
Deposit date:2016-04-15
Release date:2016-05-18
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Phosphorylation of spore coat proteins by a family of atypical protein kinases.
Proc.Natl.Acad.Sci.USA, 113, 2016
5CN7
DownloadVisualize
BU of 5cn7 by Molmil
Ultrafast dynamics in myoglobin: 0.2 ps time delay
Descriptor: CARBON MONOXIDE, Myoglobin, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Barends, T.R.M, Foucar, L, Ardevol, A, Nass, K.J, Aquila, A, Botha, S, Doak, R.B, Falahati, K, Hartmann, E, Hilpert, M, Heinz, M, Hoffmann, M.C, Koefinger, J, Koglin, J, Kovacsova, G, Liang, M, Milathianaki, D, Lemke, H.T, Reinstein, J, Roome, C.M, Shoeman, R.L, Williams, G.J, Burghardt, I, Hummer, G, Boutet, S, Schlichting, I.
Deposit date:2015-07-17
Release date:2015-09-16
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Direct observation of ultrafast collective motions in CO myoglobin upon ligand dissociation.
Science, 350, 2015
5CNE
DownloadVisualize
BU of 5cne by Molmil
Ultrafast dynamics in myoglobin: 10 ps time delay
Descriptor: CARBON MONOXIDE, Myoglobin, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Barends, T.R.M, Foucar, L, Ardevol, A, Nass, K.J, Aquila, A, Botha, S, Doak, R.B, Falahati, K, Hartmann, E, Hilpert, M, Heinz, M, Hoffmann, M.C, Koefinger, J, Koglin, J, Kovacsova, G, Liang, M, Milathianaki, D, Lemke, H.T, Reinstein, J, Roome, C.M, Shoeman, R.L, Williams, G.J, Burghardt, I, Hummer, G, Boutet, S, Schlichting, I.
Deposit date:2015-07-17
Release date:2015-09-16
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Direct observation of ultrafast collective motions in CO myoglobin upon ligand dissociation.
Science, 350, 2015
5BVW
DownloadVisualize
BU of 5bvw by Molmil
Fragment-based discovery of potent and selective DDR1/2 inhibitors
Descriptor: Epithelial discoidin domain-containing receptor 1, IODIDE ION, N-(2-CHLORO-6-METHYLPHENYL)-2-({6-[4-(2-HYDROXYETHYL)PIPERAZIN-1-YL]-2-METHYLPYRIMIDIN-4-YL}AMINO)-1,3-THIAZOLE-5-CARBOXAMIDE
Authors:Murray, C, Berdini, V, Buck, I, Carr, M, Cleasby, A, Coyle, J, Curry, J, Day, J, Hearn, K, Iqbal, A, Lee, L, Martins, V, Mortenson, P, Munck, J, Page, L, Patel, S, Roomans, S, Kirsten, T, Saxty, G.
Deposit date:2015-06-05
Release date:2015-08-05
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Fragment-Based Discovery of Potent and Selective DDR1/2 Inhibitors.
Acs Med.Chem.Lett., 6, 2015
4XUB
DownloadVisualize
BU of 4xub by Molmil
Crystal Structure of the bromodomain of human BAZ2B in complex with BAZ2-ICR chemical probe
Descriptor: 1,2-ETHANEDIOL, 4-{4-(1-methyl-1H-pyrazol-4-yl)-1-[2-(4-methyl-1H-1,2,3-triazol-1-yl)ethyl]-1H-imidazol-5-yl}benzonitrile, Bromodomain adjacent to zinc finger domain protein 2B
Authors:Chaikuad, A, Felletar, I, von Delft, F, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2015-01-25
Release date:2015-03-11
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Structure Enabled Design of BAZ2-ICR, A Chemical Probe Targeting the Bromodomains of BAZ2A and BAZ2B.
J.Med.Chem., 58, 2015
8UJW
DownloadVisualize
BU of 8ujw by Molmil
Crystal structure of the KETc7 antigen from Taenia solium
Descriptor: GRAM domain-containing protein
Authors:Sotelo-Mundo, R.R, Gomez-Yanes, A.C, Lopez-Zavala, A.A, Ochoa-Leyva, A.
Deposit date:2023-10-11
Release date:2023-11-01
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Crystal structure of the KETc7 antigen from Taenia solium
To Be Published
8UBH
DownloadVisualize
BU of 8ubh by Molmil
Solution NMR structure of KaiB variant from Thermosynechococcus elongatus vestitus (KaiBTV-4)
Descriptor: Circadian oscillation regulator
Authors:Ojoawo, A, Wayment-Steele, H.K, Kern, D.
Deposit date:2023-09-23
Release date:2023-10-25
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Predicting multiple conformations via sequence clustering and AlphaFold2.
Nature, 625, 2024
8C64
DownloadVisualize
BU of 8c64 by Molmil
Crystal structure of arsenoplatin-1/B-DNA adduct obtained upon 48 h of soaking
Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), PLATINUM (II) ION, arsenoplatin-1
Authors:Troisi, R, Tito, G, Ferraro, G, Sica, F, Merlino, A.
Deposit date:2023-01-11
Release date:2024-01-31
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:On the mechanism of action of arsenoplatins: arsenoplatin-1 binding to a B-DNA dodecamer.
Dalton Trans, 53, 2024
7E0A
DownloadVisualize
BU of 7e0a by Molmil
X-ray structure of human PPARgamma ligand binding domain-saroglitazar co-crystals obtained by co-crystallization
Descriptor: (2S)-2-ethoxy-3-[4-[2-[2-methyl-5-(4-methylsulfanylphenyl)pyrrol-1-yl]ethoxy]phenyl]propanoic acid, Isoform 2 of Peroxisome proliferator-activated receptor gamma
Authors:Kamata, S, Honda, A, Uchii, K, Machida, Y, Oyama, T, Ishii, I.
Deposit date:2021-01-27
Release date:2021-09-08
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.771 Å)
Cite:Structural Basis for Anti-non-alcoholic Fatty Liver Disease and Diabetic Dyslipidemia Drug Saroglitazar as a PPAR alpha / gamma Dual Agonist.
Biol.Pharm.Bull., 44, 2021
7ALM
DownloadVisualize
BU of 7alm by Molmil
Crystal structure of human GDAP1 at 2.8 Angstrom resolution.
Descriptor: Ganglioside-induced differentiation-associated protein 1
Authors:Nguyen, G.T.T, Sutinen, A, Raasakka, A, Kursula, P.
Deposit date:2020-10-06
Release date:2021-02-24
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure of the Complete Dimeric Human GDAP1 Core Domain Provides Insights into Ligand Binding and Clustering of Disease Mutations.
Front Mol Biosci, 7, 2020
1JMP
DownloadVisualize
BU of 1jmp by Molmil
Solution Structure of the Viscotoxin B
Descriptor: viscotoxin B
Authors:Coulon, A, Mosbah, A, Bernard, C, Rouge, P, Urech, K, Darbon, H.
Deposit date:2001-07-19
Release date:2003-11-11
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Comparative membrane interaction study of viscotoxins A3, A2 and B from mistletoe (Viscum album) and connections with their structures
Biochem.J., 374, 2003
5MNF
DownloadVisualize
BU of 5mnf by Molmil
Cationic trypsin in its apo form (deuterated sample at 295 K)
Descriptor: CALCIUM ION, Cationic trypsin, SULFATE ION
Authors:Schiebel, J, Heine, A, Klebe, G.
Deposit date:2016-12-13
Release date:2018-01-17
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (0.99 Å)
Cite:Intriguing role of water in protein-ligand binding studied by neutron crystallography on trypsin complexes.
Nat Commun, 9, 2018
4XYD
DownloadVisualize
BU of 4xyd by Molmil
Nitric oxide reductase from Roseobacter denitrificans (RdNOR)
Descriptor: CALCIUM ION, COPPER (II) ION, FE (III) ION, ...
Authors:Crow, A.
Deposit date:2015-02-02
Release date:2016-05-25
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Structure of the Membrane-intrinsic Nitric Oxide Reductase from Roseobacter denitrificans.
Biochemistry, 55, 2016
5CAD
DownloadVisualize
BU of 5cad by Molmil
Crystal structure of the vicilin from Solanum melongena revealed existence of different anionic ligands in structurally similar pockets
Descriptor: ACETATE ION, MAGNESIUM ION, PYROGLUTAMIC ACID, ...
Authors:Jain, A, Kumar, A, Salunke, D.M.
Deposit date:2015-06-29
Release date:2016-04-06
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Crystal structure of the vicilin from Solanum melongena reveals existence of different anionic ligands in structurally similar pockets
Sci Rep, 6, 2016
2JOQ
DownloadVisualize
BU of 2joq by Molmil
Solution Structure of Protein HP0495 from H. pylori; Northeast structural genomics consortium target PT2; Ontario Centre for Structural Proteomics target HP0488
Descriptor: Hypothetical protein HP_0495
Authors:Gutmanas, A, Lemak, A, Yee, A, Karra, M, Srisailam, S, Semesi, A, Arrowsmith, C.H, Northeast Structural Genomics Consortium (NESG), Ontario Centre for Structural Proteomics (OCSP)
Deposit date:2007-03-19
Release date:2007-04-03
Last modified:2024-05-08
Method:SOLUTION NMR
Cite:Solution Structure of Protein HP0495 from H. pylori
To be Published
4Y6U
DownloadVisualize
BU of 4y6u by Molmil
Mycobacterial protein
Descriptor: 1,2-ETHANEDIOL, 3-PHOSPHOGLYCERIC ACID, CHLORIDE ION, ...
Authors:Albesa-Jove, D, Rodrigo-Unzueta, A, Cifuente, J.O, Urresti, S, Comino, N, Sancho-Vaello, E, Guerin, M.E.
Deposit date:2015-02-13
Release date:2015-07-15
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.271 Å)
Cite:A Native Ternary Complex Trapped in a Crystal Reveals the Catalytic Mechanism of a Retaining Glycosyltransferase.
Angew.Chem.Int.Ed.Engl., 54, 2015

223790

數據於2024-08-14公開中

PDB statisticsPDBj update infoContact PDBjnumon