Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
4BZF
DownloadVisualize
BU of 4bzf by Molmil
Crystal structure of galactose mutarotase GalM from Bacillus subtilis with trehalose
Descriptor: ACETATE ION, ALDOSE 1-EPIMERASE, CITRIC ACID, ...
Authors:Vanden Broeck, A, Sauvage, E, Herman, R, Kerff, F, Duez, C, Charlier, P.
Deposit date:2013-07-25
Release date:2014-08-13
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structure of Galactose Mutarotase Galm from Bacillus Subtilis with Trehalose
To be Published
4A5R
DownloadVisualize
BU of 4a5r by Molmil
Crystal structure of class A beta-lactamase from Bacillus licheniformis BS3 with tazobactam
Descriptor: BETA-LACTAMASE, CARBON DIOXIDE, CITRIC ACID, ...
Authors:Power, P, Sauvage, E, Herman, R, Kerff, F, Charlier, P.
Deposit date:2011-10-28
Release date:2012-10-10
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structure of Class a Beta-Lactamase from Bacillus Licheniformis Inhibited by Tazobactam
To be Published
4D2O
DownloadVisualize
BU of 4d2o by Molmil
Crystal structure of the class A extended-spectrum beta-lactamase PER- 2
Descriptor: PER-2 BETA-LACTAMASE
Authors:Power, P, Herman, R, Ruggiero, M, Kerff, F, Galleni, M, Gutkind, G, Charlier, P, Sauvage, E.
Deposit date:2014-05-12
Release date:2014-05-21
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal Structure of the Extended-Spectrum Beta-Lactamase Per- 2 and Insights Into the Role of Specific Residues in the Interaction with Beta-Lactams and Beta-Lactamase Inhibitors.
Antimicrob.Agents Chemother., 58, 2014
4BJQ
DownloadVisualize
BU of 4bjq by Molmil
Crystal structure of E. coli penicillin binding protein 3, domain V88- S165
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, PENICILLIN BINDING PROTEIN TRANSPEPTIDASE DOMAIN PROTEIN, SULFATE ION
Authors:Sauvage, E, Joris, M, Herman, R, Kerff, F, Rocaboy, M, Charlier, P.
Deposit date:2013-04-19
Release date:2014-05-07
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structure of Penicillin-Binding Protein 3 (Pbp3) from Escherichia Coli.
Plos One, 9, 2014
4BEN
DownloadVisualize
BU of 4ben by Molmil
R39-imipenem Acyl-enzyme crystal structure
Descriptor: (5R)-5-[(1S,2R)-1-formyl-2-hydroxypropyl]-3-[(2-{[(E)-iminomethyl]amino}ethyl)sulfanyl]-4,5-dihydro-1H-pyrrole-2-carbox ylic acid, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, D-ALANYL-D-ALANINE CARBOXYPEPTIDASE, ...
Authors:Van Elder, D, Sauvage, E, Herman, R, Kerff, F, Rocaboy, M, Charlier, P.
Deposit date:2013-03-11
Release date:2013-03-20
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystal Structures of R39-Imipenem Acyl-Enzyme.
To be Published
3D30
DownloadVisualize
BU of 3d30 by Molmil
Structure of an expansin like protein from Bacillus Subtilis at 1.9A resolution
Descriptor: Expansin like protein, FORMIC ACID, GLYCEROL
Authors:Kerff, F, Petrella, S, Herman, R, Sauvage, E, Joris, B, Charlier, P.
Deposit date:2008-05-09
Release date:2008-10-14
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure and activity of Bacillus subtilis YoaJ (EXLX1), a bacterial expansin that promotes root colonization.
Proc.Natl.Acad.Sci.USA, 105, 2008
3D2Z
DownloadVisualize
BU of 3d2z by Molmil
Complex of the N-acetylmuramyl-L-alanine amidase AmiD from E.coli with the product L-Ala-D-gamma-Glu-L-Lys
Descriptor: CHLORIDE ION, L-Ala-D-gamma-Glu-L-Lys peptide, N-acetylmuramoyl-L-alanine amidase amiD, ...
Authors:Kerff, F, Petrella, S, Herman, R, Sauvage, E, Mercier, F, Luxen, A, Frere, J.M, Joris, B, Charlier, P.
Deposit date:2008-05-09
Release date:2009-06-16
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Specific Structural Features of the N-Acetylmuramoyl-l-Alanine Amidase AmiD from Escherichia coli and Mechanistic Implications for Enzymes of This Family.
J.Mol.Biol., 397, 2010
3D2Y
DownloadVisualize
BU of 3d2y by Molmil
Complex of the N-acetylmuramyl-L-alanine amidase AmiD from E.coli with the substrate anhydro-N-acetylmuramic acid-L-Ala-D-gamma-Glu-L-Lys
Descriptor: Anhydro-N-acetylmuramic acid-L-Ala-D-gamma-Glu-L-Lys, GLYCEROL, N-acetylmuramoyl-L-alanine amidase amiD
Authors:Kerff, F, Petrella, S, Herman, R, Sauvage, E, Mercier, F, Luxen, A, Frere, J.M, Joris, B, Charlier, P.
Deposit date:2008-05-09
Release date:2009-06-16
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Specific Structural Features of the N-Acetylmuramoyl-l-Alanine Amidase AmiD from Escherichia coli and Mechanistic Implications for Enzymes of This Family.
J.Mol.Biol., 397, 2010
2WK0
DownloadVisualize
BU of 2wk0 by Molmil
Crystal structure of the class A beta-lactamase BS3 inhibited by 6- beta-iodopenicillanate.
Descriptor: (3S)-2,2-dimethyl-3,4-dihydro-2H-1,4-thiazine-3,6-dicarboxylic acid, BETA-LACTAMASE, CHLORIDE ION, ...
Authors:Sauvage, E, Zervosen, A, Dive, G, Herman, R, Kerff, F, Amoroso, A, Fonze, E, Pratt, R.F, Luxen, A, Charlier, P.
Deposit date:2009-06-03
Release date:2009-12-01
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural Basis of the Inhibition of Class a Beta-Lactamases and Penicillin-Binding Proteins by 6-Beta-Iodopenicillanate.
J.Am.Chem.Soc., 131, 2009
2WUQ
DownloadVisualize
BU of 2wuq by Molmil
Crystal structure of BlaB protein from Streptomyces cacaoi
Descriptor: BETA-LACTAMASE REGULATORY PROTEIN BLAB, GLYCEROL
Authors:Dandois, S, Herman, R, Sauvage, E, Charlier, P, Joris, B, Kerff, F.
Deposit date:2009-10-07
Release date:2010-10-13
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The Crystal Structure of Blab Protein from Streptomyces Cacaoi
To be Published
2WKE
DownloadVisualize
BU of 2wke by Molmil
Crystal structure of the Actinomadura R39 DD-peptidase inhibited by 6- beta-iodopenicillanate.
Descriptor: (3S)-2,2-dimethyl-3,4-dihydro-2H-1,4-thiazine-3,6-dicarboxylic acid, COBALT (II) ION, D-ALANYL-D-ALANINE CARBOXYPEPTIDASE, ...
Authors:Sauvage, E, Herman, R, Kerff, F, Charlier, P.
Deposit date:2009-06-10
Release date:2009-12-01
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural Basis of the Inhibition of Class a Beta-Lactamases and Penicillin-Binding Proteins by 6-Beta-Iodopenicillanate.
J.Am.Chem.Soc., 131, 2009
2WKX
DownloadVisualize
BU of 2wkx by Molmil
Crystal structure of the native E. coli zinc amidase AmiD
Descriptor: CHLORIDE ION, GLYCEROL, N-ACETYLMURAMOYL-L-ALANINE AMIDASE AMID, ...
Authors:Petrella, S, Kerff, F, Herman, R, Genereux, C, Pennartz, A, Sauvage, E, Joris, B, Charlier, P.
Deposit date:2009-06-18
Release date:2010-01-12
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Specific Structural Features of the N-Acetylmuramoyl-L-Alanine Amidase Amid from Escherichia Coli and Mechanistic Implications for Enzymes of This Family.
J.Mol.Biol., 397, 2010
2AGN
DownloadVisualize
BU of 2agn by Molmil
Fitting of hepatitis C virus internal ribosome entry site domains into the 15 A Cryo-EM map of a HCV IRES-80S ribosome (H. sapiens) complex
Descriptor: 6 nt A-RNA helix, HCV IRES DOMAIN II, HCV IRES IIIABC, ...
Authors:Boehringer, D, Thermann, R, Ostareck-Lederer, A, Lewis, J.D, Stark, H.
Deposit date:2005-07-27
Release date:2006-07-25
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (15 Å)
Cite:Structure of the hepatitis C Virus IRES bound to the human 80S ribosome: remodeling of the HCV IRES
Structure, 13, 2005
8A0D
DownloadVisualize
BU of 8a0d by Molmil
Crystal structure of the major guinea pig allergen Cav p 1.0101 part of the lipocalin family
Descriptor: Allergen lipocalin Cav p 1 isoform 1
Authors:Herman, R, Charlier, P, Janssen-Weets, B, Hilger, C, Swiontek, K.
Deposit date:2022-05-27
Release date:2022-08-03
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (3.685 Å)
Cite:Mammalian derived lipocalin and secretoglobin respiratory allergens strongly bind ligands with potentially immune modulating properties.
Front Allergy, 3, 2022
6YN0
DownloadVisualize
BU of 6yn0 by Molmil
Structure of E. coli PBP1b with a FtsN peptide activating transglycosylase activity
Descriptor: Cell division protein FtsN, MOENOMYCIN, Penicillin-binding protein 1B
Authors:Kerff, F, Terrak, M, Boes, A, Herman, H, Charlier, P.
Deposit date:2020-04-10
Release date:2020-11-04
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The bacterial cell division protein fragment E FtsN binds to and activates the major peptidoglycan synthase PBP1b.
J.Biol.Chem., 295, 2020
6EXS
DownloadVisualize
BU of 6exs by Molmil
Crystal structure of a POT family transporter in complex with thioalcohol conjugated peptide.
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, 2-[[(2~{R})-2-azanyl-3-[(3~{S})-3-methyl-1-oxidanyl-hexan-3-yl]sulfanyl-propanoyl]amino]ethanoic acid, Peptide ABC transporter permease
Authors:Minhas, G.S, Newstead, S.
Deposit date:2017-11-09
Release date:2018-06-27
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis of malodour precursor transport in the human axilla.
Elife, 7, 2018
7AG0
DownloadVisualize
BU of 7ag0 by Molmil
Complex between the bone morphogenetic protein 2 and its antagonist Noggin
Descriptor: Bone morphogenetic protein 2, GLYCEROL, Noggin
Authors:Robert, C, Bruck, F, Herman, R, Vandevenne, M, Filee, P, Kerff, F, Matagne, A.
Deposit date:2020-09-21
Release date:2022-04-13
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (3.104 Å)
Cite:Structural analysis of the interaction between human cytokine BMP-2 and the antagonist Noggin reveals molecular details of cell chondrogenesis inhibition.
J.Biol.Chem., 299, 2023
1W7G
DownloadVisualize
BU of 1w7g by Molmil
Alpha-thrombin complex with sulfated hirudin (residues 54-65) and L- Arginine template inhibitor CS107
Descriptor: HIRUDIN I, N-{(1S)-1-{[4-(3-AMINOPROPYL)PIPERAZIN-1-YL]CARBONYL}-4-[(DIAMINOMETHYLENE)AMINO]BUTYL}-3-(TRIFLUOROMETHYL)BENZENESULFONAMIDE, THROMBIN
Authors:Remiche, J, Sauvage, E, Herman, R, Charlier, P.
Deposit date:2004-09-02
Release date:2006-05-24
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Design, Synthesis and Evaluation of Graftable Thrombin Inhibitors for the Preparation of Blood-Compatible Polymer Materials.
Org.Biomol.Chem., 3, 2005
2HP6
DownloadVisualize
BU of 2hp6 by Molmil
Crystal structure of the OXA-10 W154A mutant at pH 7.5
Descriptor: Beta-lactamase PSE-2, SULFATE ION
Authors:Kerff, F, Falzone, C, Herman, R, Sauvage, E, Charlier, P.
Deposit date:2006-07-17
Release date:2007-07-03
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Critical role of tryptophan 154 for the activity and stability of class D beta-lactamases.
Biochemistry, 48, 2009
2HPB
DownloadVisualize
BU of 2hpb by Molmil
Crystal structure of the OXA-10 W154A mutant at pH 9.0
Descriptor: Beta-lactamase PSE-2, SULFATE ION
Authors:Kerff, F, Falzone, C, Herman, R, Sauvage, E, Charlier, P.
Deposit date:2006-07-17
Release date:2007-07-03
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Critical role of tryptophan 154 for the activity and stability of class D beta-lactamases.
Biochemistry, 48, 2009
2HP5
DownloadVisualize
BU of 2hp5 by Molmil
Crystal Structure of the OXA-10 W154G mutant at pH 7.0
Descriptor: Beta-lactamase PSE-2, COBALT (II) ION, SULFATE ION
Authors:Kerff, F, Falzone, C, Herman, R, Sauvage, E, Charlier, P.
Deposit date:2006-07-17
Release date:2007-07-03
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Critical role of tryptophan 154 for the activity and stability of class D beta-lactamases.
Biochemistry, 48, 2009
2HP9
DownloadVisualize
BU of 2hp9 by Molmil
Crystal Structure of the OXA-10 W154A mutant at pH 6.0
Descriptor: Beta-lactamase PSE-2, SULFATE ION
Authors:Kerff, F, Falzone, C, Herman, R, Sauvage, E, Charlier, P.
Deposit date:2006-07-17
Release date:2007-07-03
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Critical role of tryptophan 154 for the activity and stability of class D beta-lactamases.
Biochemistry, 48, 2009
2X02
DownloadVisualize
BU of 2x02 by Molmil
CRYSTAL STRUCTURE OF THE CLASS D BETA-LACTAMASE OXA-10 AT 1.35 A RESOLUTION
Descriptor: BETA-LACTAMASE OXA-10, DIMETHYL SULFOXIDE, GLYCEROL, ...
Authors:Vercheval, L, Kerff, F, Sauvage, E, Herman, R, Galleni, M, Charlier, P.
Deposit date:2009-12-04
Release date:2010-12-08
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Impact of the Carboxylated Lysine on the Acylation and Deacylation Step in Class D Beta-Lactamase
To be Published
2RL3
DownloadVisualize
BU of 2rl3 by Molmil
Crystal structure of the OXA-10 W154H mutant at pH 7
Descriptor: 1,2-ETHANEDIOL, Beta-lactamase PSE-2, GLYCEROL, ...
Authors:Vercheval, L, Kerff, F, Herman, R, Sauvage, E, Guiet, R, Charlier, P, Frere, J.-M, Galleni, M.
Deposit date:2007-10-18
Release date:2008-10-28
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Critical role of tryptophan 154 for the activity and stability of class D beta-lactamases.
Biochemistry, 48, 2009
2XDM
DownloadVisualize
BU of 2xdm by Molmil
Crystal structure of a complex between Actinomadura R39 DD peptidase and a peptidoglycan mimetic boronate inhibitor
Descriptor: (D-ALPHA-AMINOPIMELYLAMINO)-D-1-ETHYLBORONIC ACID, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, COBALT (II) ION, ...
Authors:Rocaboy, M, Sauvage, E, Herman, R, Kerff, F, Charlier, P.
Deposit date:2010-05-04
Release date:2010-07-21
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal Structure of a Complex between the Actinomadura R39 Dd-Peptidase and a Peptidoglycan- Mimetic Boronate Inhibitor: Interpretation of a Transition State Analogue in Terms of Catalytic Mechanism.
Biochemistry, 49, 2010

226707

數據於2024-10-30公開中

PDB statisticsPDBj update infoContact PDBjnumon