3D2Y

Complex of the N-acetylmuramyl-L-alanine amidase AmiD from E.coli with the substrate anhydro-N-acetylmuramic acid-L-Ala-D-gamma-Glu-L-Lys

Summary for 3D2Y

• Entry DOI: 10.2210/pdb3d2y/pdb
• Related: 2BGX 2BH7 3D2Z
• Descriptor: N-acetylmuramoyl-L-alanine amidase amiD, Anhydro-N-acetylmuramic acid-L-Ala-D-gamma-Glu-L-Lys, GLYCEROL, ... (4 entities in total)
• Functional Keywords: zinc amidase, pgrp, peptidoglycan recognizing protein, ampd, n-acetylmuramyl-l-alanine amidase, cell wall biogenesis/degradation, hydrolase, lipoprotein, membrane, metal-binding, outer membrane, palmitate
• Biological source: Escherichia coli; More
• Cellular location: Cell outer membrane; Lipid-anchor (Probable): P75820
• Total number of polymer chains: 2
• Total formula weight: 30165.05

Authors

Kerff, F.,Petrella, S.,Herman, R.,Sauvage, E.,Mercier, F.,Luxen, A.,Frere, J.M.,Joris, B.,Charlier, P. (deposition date: 2008-05-09, release date: 2009-06-16, Last modification date: 2023-08-30)

• Primary citation: Kerff, F.,Petrella, S.,Mercier, F.,Sauvage, E.,Herman, R.,Pennartz, A.,Zervosen, A.,Luxen, A.,Frere, J.M.,Joris, B.,Charlier, P.; Specific Structural Features of the N-Acetylmuramoyl-l-Alanine Amidase AmiD from Escherichia coli and Mechanistic Implications for Enzymes of This Family.; J.Mol.Biol., 397:249-259, 2010; PubMed: 20036252; DOI: 10.1016/j.jmb.2009.12.038

Experimental method

X-RAY DIFFRACTION (1.75 Å)