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4HON
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BU of 4hon by Molmil
Crystal structure of human JMJD2D/KDM4D in complex with an H3K9me3 peptide and 2-oxoglutarate
Descriptor: 1,3-PROPANDIOL, 2-OXOGLUTARIC ACID, Histone H3 Peptide, ...
Authors:Krishnan, S, Trievel, R.C.
Deposit date:2012-10-22
Release date:2012-11-21
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.799 Å)
Cite:Structural and Functional Analysis of JMJD2D Reveals Molecular Basis for Site-Specific Demethylation among JMJD2 Demethylases.
Structure, 21, 2013
4HOO
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BU of 4hoo by Molmil
Crystal structure of human JMJD2D/KDM4D apoenzyme
Descriptor: ACETATE ION, Lysine-specific demethylase 4D, NICKEL (II) ION, ...
Authors:Krishnan, S, Trievel, R.C.
Deposit date:2012-10-22
Release date:2012-11-21
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.495 Å)
Cite:Structural and Functional Analysis of JMJD2D Reveals Molecular Basis for Site-Specific Demethylation among JMJD2 Demethylases.
Structure, 21, 2013
8U5Y
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BU of 8u5y by Molmil
human RADX trimer bound to ssDNA
Descriptor: DNA (25-MER), RPA-related protein RADX
Authors:Balakrishnan, S, Chazin, W.J.
Deposit date:2023-09-13
Release date:2023-10-11
Last modified:2023-10-18
Method:ELECTRON MICROSCOPY (3.01 Å)
Cite:Structure of RADX and mechanism for regulation of RAD51 nucleofilaments.
Biorxiv, 2023
8U61
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BU of 8u61 by Molmil
Human RADX tetramer bound to ssDNA
Descriptor: RPA-related protein RADX, dT25 DNA (25-MER)
Authors:Balakrishnan, S, Chazin, W.J.
Deposit date:2023-09-13
Release date:2024-01-31
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Structure of RADX and mechanism for regulation of RAD51 nucleofilaments.
Proc.Natl.Acad.Sci.USA, 121, 2024
5XE4
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BU of 5xe4 by Molmil
NMR solution structure of the aromatic mutant H43W H67F cytochrome b5
Descriptor: Cytochrome b5
Authors:Balakrishnan, S, Sarma, S.P.
Deposit date:2017-03-31
Release date:2018-02-14
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Engineering Aromatic-Aromatic Interactions To Nucleate Folding in Intrinsically Disordered Regions of Proteins
Biochemistry, 56, 2017
5XEE
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BU of 5xee by Molmil
NMR solution structure of the aromatic mutant H43F H67F cytochrome b5
Descriptor: Cytochrome b5
Authors:Balakrishnan, S, Sarma, S.P.
Deposit date:2017-04-04
Release date:2018-02-14
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Engineering Aromatic-Aromatic Interactions To Nucleate Folding in Intrinsically Disordered Regions of Proteins
Biochemistry, 56, 2017
4D9T
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BU of 4d9t by Molmil
Rsk2 C-terminal Kinase Domain with inhibitor (E)-methyl 3-(4-amino-7-(3-hydroxypropyl)-5-p-tolyl-7H-pyrrolo[2,3-d]pyrimidin-6-yl)-2-cyanoacrylate
Descriptor: Ribosomal protein S6 kinase alpha-3, SODIUM ION, methyl (2S)-3-{4-amino-7-[(1E)-3-hydroxyprop-1-en-1-yl]-5-(4-methylphenyl)-7H-pyrrolo[2,3-d]pyrimidin-6-yl}-2-cyanopropanoate
Authors:Serafimova, I.M, Pufall, M.A, Krishnan, S, Duda, K, Cohen, M.S, Maglathlin, R.L, McFarland, J.M, Miller, R.M, Frodin, M, Taunton, J.
Deposit date:2012-01-12
Release date:2012-04-25
Last modified:2012-05-16
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Reversible targeting of noncatalytic cysteines with chemically tuned electrophiles.
Nat.Chem.Biol., 8, 2012
4D9U
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BU of 4d9u by Molmil
Rsk2 C-terminal Kinase Domain, (E)-tert-butyl 3-(4-amino-7-(3-hydroxypropyl)-5-p-tolyl-7H-pyrrolo[2,3-d]pyrimidin-6-yl)-2-cyanoacrylate
Descriptor: Ribosomal protein S6 kinase alpha-3, SODIUM ION, tert-butyl (2S)-3-[4-amino-7-(3-hydroxypropyl)-5-(4-methylphenyl)-7H-pyrrolo[2,3-d]pyrimidin-6-yl]-2-cyanopropanoate
Authors:Serafimova, I.M, Pufall, M.A, Krishnan, S, Duda, K, Cohen, M.S, Maglathlin, R.L, McFarland, J.M, Miller, R.M, Frodin, M, Taunton, J.
Deposit date:2012-01-12
Release date:2012-04-11
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Reversible targeting of noncatalytic cysteines with chemically tuned electrophiles.
Nat.Chem.Biol., 8, 2012
4JG6
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BU of 4jg6 by Molmil
RSK2 CTD bound to 2-cyano-3-(1H-indazol-5-yl)acrylamide
Descriptor: (2S)-2-cyano-3-(1H-indazol-5-yl)propanamide, Ribosomal protein S6 kinase alpha-3, SODIUM ION
Authors:Miller, R.M, Paavilainen, V.O, Krishnan, S, Serafimova, I.M, Taunton, J.
Deposit date:2013-02-28
Release date:2013-04-10
Last modified:2013-04-24
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Electrophilic fragment-based design of reversible covalent kinase inhibitors.
J.Am.Chem.Soc., 135, 2013
4JG7
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BU of 4jg7 by Molmil
Structure of RSK2 CTD bound to 3-(3-(1H-pyrrolo[2,3-b]pyridine-3-carbonyl)phenyl)-2-cyanoacrylamide
Descriptor: (2R)-2-cyano-3-[3-(1H-pyrrolo[2,3-b]pyridin-3-ylcarbonyl)phenyl]propanamide, Ribosomal protein S6 kinase alpha-3, SODIUM ION
Authors:Miller, R.M, Paavilainen, V.O, Krishnan, S, Serafimova, I.M, Taunton, J.
Deposit date:2013-02-28
Release date:2013-04-10
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.0002 Å)
Cite:Electrophilic fragment-based design of reversible covalent kinase inhibitors.
J.Am.Chem.Soc., 135, 2013
4JG8
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BU of 4jg8 by Molmil
Structure of RSK2 T493M CTD mutant bound to 2-cyano-N-(1-hydroxy-2-methylpropan-2-yl)-3-(3-(3,4,5-trimethoxyphenyl)-1H-indazol-5-yl)acrylamide
Descriptor: (2S)-2-cyano-N-(1-hydroxy-2-methylpropan-2-yl)-3-[3-(3,4,5-trimethoxyphenyl)-1H-indazol-5-yl]propanamide, Ribosomal protein S6 kinase alpha-3
Authors:Miller, R.M, Paavilainen, V.O, Krishnan, S, Serafimova, I.M, Taunton, J.
Deposit date:2013-02-28
Release date:2013-04-10
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (3.1002 Å)
Cite:Electrophilic fragment-based design of reversible covalent kinase inhibitors.
J.Am.Chem.Soc., 135, 2013
8S9W
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BU of 8s9w by Molmil
Murine S100A7/S100A15 in presence of calcium
Descriptor: ACETATE ION, CALCIUM ION, GLYCEROL, ...
Authors:Harrison, S.A, Naretto, A, Balakrishnan, S, Chazin, W.J.
Deposit date:2023-03-30
Release date:2024-02-07
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Comparative analysis of the physical properties of murine and human S100A7: Insight into why zinc piracy is mediated by human but not murine S100A7.
J.Biol.Chem., 299, 2023
4MAO
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BU of 4mao by Molmil
RSK2 T493M C-Terminal Kinase Domain in Complex with RMM58
Descriptor: (2Z)-2-(1H-1,2,4-triazol-1-yl)-3-[3-(3,4,5-trimethoxyphenyl)-1H-indazol-5-yl]prop-2-enenitrile, Ribosomal protein S6 kinase alpha-3, SODIUM ION
Authors:Miller, R.M, Taunton, J.
Deposit date:2013-08-16
Release date:2014-10-22
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Design of reversible, cysteine-targeted Michael acceptors guided by kinetic and computational analysis.
J.Am.Chem.Soc., 136, 2014
6VWV
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BU of 6vwv by Molmil
Transitional unit cell 2 of adenine riboswitch aptamer crystal phase transition upon ligand binding
Descriptor: ADENINE, MAGNESIUM ION, POTASSIUM ION, ...
Authors:Stagno, J.R, Wang, Y.-X.
Deposit date:2020-02-20
Release date:2020-11-11
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3 Å)
Cite:Synchronous RNA conformational changes trigger ordered phase transitions in crystals.
Nat Commun, 12, 2021
6VWT
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BU of 6vwt by Molmil
Transitional unit cell 1 of adenine riboswitch aptamer crystal phase transition upon ligand binding
Descriptor: ADENINE, MAGNESIUM ION, adenine riboswitch aptamer variant
Authors:Stagno, J.R, Wang, Y.-X.
Deposit date:2020-02-20
Release date:2020-11-11
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.03 Å)
Cite:Synchronous RNA conformational changes trigger ordered phase transitions in crystals.
Nat Commun, 12, 2021
4GJY
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BU of 4gjy by Molmil
JMJD5 in complex with N-Oxalylglycine
Descriptor: COBALT (II) ION, JmjC domain-containing protein 5, N-OXALYLGLYCINE
Authors:Del Rizzo, P.A, Trievel, R.C.
Deposit date:2012-08-10
Release date:2012-09-05
Last modified:2012-11-14
Method:X-RAY DIFFRACTION (1.2492 Å)
Cite:Crystal Structure and Functional Analysis of JMJD5 Indicate an Alternate Specificity and Function.
Mol.Cell.Biol., 32, 2012
6OCE
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BU of 6oce by Molmil
Structure of the rice hyperosmolality-gated ion channel OSCA1.2
Descriptor: stress-gated cation channel 1.2
Authors:Maity, K, Heumann, J.M, McGrath, A.P, Chang, G, Stowell, M.H.
Deposit date:2019-03-23
Release date:2019-07-03
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (4.9 Å)
Cite:Cryo-EM structure of OSCA1.2 fromOryza sativaelucidates the mechanical basis of potential membrane hyperosmolality gating.
Proc.Natl.Acad.Sci.USA, 116, 2019
7Y0D
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BU of 7y0d by Molmil
Cryo-EM structure of the Mycobacterium smegmatis DNA integrity scanning protein (MsDisA).
Descriptor: DNA integrity scanning protein DisA
Authors:Gautam, S, Vinothkumar, K.R, Chatterji, D.
Deposit date:2022-06-04
Release date:2023-02-08
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Regulatory mechanisms of c-di-AMP synthase (MsDisA) protein from Mycobacterium smegmatis revealed by a structure - function analysis.
Protein Sci., 32, 2023
8P4X
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BU of 8p4x by Molmil
FAD_ox bound dark state structure of PdLCry
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, MAGNESIUM ION, Putative light-receptive cryptochrome (Fragment)
Authors:Behrmann, E, Behrmann, H.
Deposit date:2023-05-23
Release date:2023-11-08
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (2.57 Å)
Cite:A marine cryptochrome with an inverse photo-oligomerization mechanism.
Nat Commun, 14, 2023
4GJZ
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BU of 4gjz by Molmil
JMJD5 in complex with 2-oxoglutarate
Descriptor: 2-OXOGLUTARIC ACID, BETA-MERCAPTOETHANOL, COBALT (II) ION, ...
Authors:Del Rizzo, P.A, Trievel, R.C.
Deposit date:2012-08-10
Release date:2012-09-05
Last modified:2012-11-14
Method:X-RAY DIFFRACTION (1.0481 Å)
Cite:Crystal Structure and Functional Analysis of JMJD5 Indicate an Alternate Specificity and Function.
Mol.Cell.Biol., 32, 2012
1S6P
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BU of 1s6p by Molmil
CRYSTAL STRUCTURE OF HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 REVERSE TRANSCRIPTASE (RT) IN COMPLEX WITH JANSSEN-R100943
Descriptor: 1-(4-CYANO-PHENYL)-3-[2-(2,6-DICHLORO-PHENYL)-1-IMINO-ETHYL]-THIOUREA, MAGNESIUM ION, POL polyprotein [Contains: Reverse transcriptase]
Authors:Das, K, Arnold, E.
Deposit date:2004-01-26
Release date:2004-05-11
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Roles of Conformational and Positional Adaptability in Structure-Based Design of TMC125-R165335 (Etravirine) and Related Non-nucleoside Reverse Transcriptase Inhibitors That Are Highly Potent and Effective against Wild-Type and Drug-Resistant HIV-1 Variants
J.Med.Chem., 47, 2004
4M8T
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BU of 4m8t by Molmil
RSK2 T493M C-Terminal Kinase Domain in complex with 3-(3-(1H-pyrazol-4-yl)phenyl)-2-cyanoacrylamide
Descriptor: (2E)-2-cyano-3-[3-(1H-pyrazol-4-yl)phenyl]prop-2-enamide, Ribosomal protein S6 kinase alpha-3, SODIUM ION
Authors:Miller, R.M, Taunton, J.
Deposit date:2013-08-13
Release date:2014-10-22
Last modified:2014-11-26
Method:X-RAY DIFFRACTION (3 Å)
Cite:Covalent docking of large libraries for the discovery of chemical probes.
Nat.Chem.Biol., 10, 2014
4LV0
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BU of 4lv0 by Molmil
AmpC beta-lactamase in complex with m-aminophenyl boronic acid
Descriptor: Beta-lactamase, M-AMINOPHENYLBORONIC ACID, PHOSPHATE ION
Authors:London, N, Eidam, O, Shoichet, B.K.
Deposit date:2013-07-25
Release date:2014-07-30
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.652 Å)
Cite:Covalent docking of large libraries for the discovery of chemical probes.
Nat.Chem.Biol., 10, 2014
4LV2
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BU of 4lv2 by Molmil
AmpC beta-lactamase in complex with [1-(6-chloropyrimidin-4-yl)-1H-pyrazol-4-yl] boronic acid
Descriptor: Beta-lactamase, PHOSPHATE ION, [1-(6-chloropyrimidin-4-yl)-1H-pyrazol-4-yl]boronic acid
Authors:London, N, Eidam, O, Shoichet, B.K.
Deposit date:2013-07-25
Release date:2014-07-30
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Covalent docking of large libraries for the discovery of chemical probes.
Nat.Chem.Biol., 10, 2014
4LV1
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BU of 4lv1 by Molmil
AmpC beta-lactamase in complex with [1-(3-chlorophenyl)-1H-pyrazol-4-yl] boronic acid
Descriptor: Beta-lactamase, PHOSPHATE ION, [1-(3-chlorophenyl)-1H-pyrazol-4-yl]boronic acid
Authors:London, N, Eidam, O, Shoichet, B.K.
Deposit date:2013-07-25
Release date:2014-07-30
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Covalent docking of large libraries for the discovery of chemical probes.
Nat.Chem.Biol., 10, 2014

 

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