Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
3OER
DownloadVisualize
BU of 3oer by Molmil
Crystal structure of trimeric frataxin from the yeast saccharomyces cerevisiae, complexed with cobalt
Descriptor: COBALT (II) ION, Frataxin homolog, mitochondrial
Authors:Soderberg, C.A.G, Rajan, S, Gakh, O, Ta, C, Isaya, G, Al-Karadaghi, S.
Deposit date:2010-08-13
Release date:2011-08-24
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Oligomerization Propensity and Flexibility of Yeast Frataxin Studied by X-ray Crystallography and Small-Angle X-ray Scattering.
J.Mol.Biol., 414, 2011
4N3P
DownloadVisualize
BU of 4n3p by Molmil
Crystal Structure of De Novo designed Serine Hydrolase OSH18, Northeast Structural Genomics Consortium (NESG) Target OR396
Descriptor: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, SODIUM ION, ...
Authors:Kuzin, A, Lew, S, Rajagopalan, S, Seetharaman, J, Mao, L, Xiao, R, Kogan, S, Maglaqui, M, Everett, J.K, Acton, T.B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2013-10-07
Release date:2013-11-13
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.501 Å)
Cite:Crystal Structure of De Novo designed Serine Hydrolase OSH18, Northeast Structural Genomics Consortium (NESG) Target OR396
To be Published
1S1Y
DownloadVisualize
BU of 1s1y by Molmil
Photoactivated chromophore conformation in Photoactive Yellow Protein (E46Q mutant) from 10 microseconds to 3 milliseconds
Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
Authors:Anderson, S, Srajer, V, Pahl, R, Rajagopal, S, Schotte, F, Anfinrud, P, Wulff, M, Moffat, K.
Deposit date:2004-01-07
Release date:2004-06-15
Last modified:2021-10-27
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Chromophore conformation and the evolution of tertiary structural changes in photoactive yellow protein
Structure, 12, 2004
1S1Z
DownloadVisualize
BU of 1s1z by Molmil
Photoactivated chromophore conformation in Photoactive Yellow Protein (E46Q mutant) from 10 to 500 nanoseconds
Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive Yellow Protein
Authors:Anderson, S, Srajer, V, Pahl, R, Rajagopal, S, Schotte, F, Anfinrud, P, Wulff, M, Moffat, K.
Deposit date:2004-01-07
Release date:2004-06-15
Last modified:2021-10-27
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Chromophore conformation and the evolution of tertiary structural changes in photoactive yellow protein
Structure, 12, 2004
1S4R
DownloadVisualize
BU of 1s4r by Molmil
Structure of a reaction intermediate in the photocycle of PYP extracted by a SVD-driven analysis
Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
Authors:Schmidt, M, Pahl, R, Srajer, V, Anderson, S, Ren, Z, Ihee, H, Rajagopal, S, Moffat, K.
Deposit date:2004-01-17
Release date:2004-04-13
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Protein kinetics: Structures of intermediates and reaction mechanism from time-resolved x-ray data
Proc.Natl.Acad.Sci.USA, 101, 2004
1TS8
DownloadVisualize
BU of 1ts8 by Molmil
Structure of the pR cis planar intermediate from time-resolved Laue crystallography
Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
Authors:Ihee, H, Rajagopal, S, Srajer, V, Pahl, R, Anderson, S, Schmidt, M, Schotte, F, Anfinrud, P.A, Wulff, M, Moffat, K.
Deposit date:2004-06-21
Release date:2005-07-05
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Visualizing reaction pathways in photoactive yellow protein from nanoseconds to seconds.
Proc.Natl.Acad.Sci.Usa, 102, 2005
1TS7
DownloadVisualize
BU of 1ts7 by Molmil
Structure of the pR cis wobble and pR E46Q intermediates from time-resolved Laue crystallography
Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
Authors:Ihee, H, Rajagopal, S, Srajer, V, Pahl, R, Anderson, S, Schmidt, M, Schotte, F, Anfinrud, P.A, Wulff, M, Moffat, K.
Deposit date:2004-06-21
Release date:2005-07-05
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Visualizing reaction pathways in photoactive yellow protein from nanoseconds to seconds.
Proc.Natl.Acad.Sci.Usa, 102, 2005
4E3R
DownloadVisualize
BU of 4e3r by Molmil
PLP-bound aminotransferase mutant crystal structure from Vibrio fluvialis
Descriptor: Pyruvate transaminase, SODIUM ION, SULFATE ION
Authors:Midelfort, K.S, Kumar, R, Han, S, Karmilowicz, M.J, McConnell, K, Gehlhaar, D.K, Mistry, A, Chang, J.S, Anderson, M, Vilalobos, A, Minshull, J, Govindarajan, S, Wong, J.W.
Deposit date:2012-03-10
Release date:2012-10-10
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Redesigning and characterizing the substrate specificity and activity of Vibrio fluvialis aminotransferase for the synthesis of imagabalin.
Protein Eng.Des.Sel., 26, 2013
4GVV
DownloadVisualize
BU of 4gvv by Molmil
Crystal Structure of de novo design serine hydrolase OSH55.27, Northeast Structural Genomics Consortium (NESG) Target OR246
Descriptor: De novo design serine hydrolase
Authors:Kuzin, A, Lew, S, Seetharaman, J, Mao, M, Xiao, R, Kohan, E, Rajagopalan, S, Everett, J.K, Acton, T.B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2012-08-31
Release date:2012-09-12
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.895 Å)
Cite:Northeast Structural Genomics Consortium Target OR246
To be Published
4GVW
DownloadVisualize
BU of 4gvw by Molmil
Three-dimensional structure of the de novo designed serine hydrolase 2bfq_3, Northeast Structural Genomics Consortium (NESG) Target OR248
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ACETIC ACID, De novo designed serine hydrolase, ...
Authors:Kuzin, A, Lew, S, Seetharaman, J, Rajagopalan, S, Everett, J.K, Acton, T.B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2012-08-31
Release date:2012-09-12
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.113 Å)
Cite:Northeast Structural Genomics Consortium Target OR248
To be Published
1TS0
DownloadVisualize
BU of 1ts0 by Molmil
Structure of the pB1 intermediate from time-resolved Laue crystallography
Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
Authors:Ihee, H, Rajagopal, S, Srajer, V, Pahl, R, Anderson, S, Schmidt, M, Schotte, F, Anfinrud, P.A, Wulff, M, Moffat, K.
Deposit date:2004-06-21
Release date:2005-07-05
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Visualizing reaction pathways in photoactive yellow protein from nanoseconds to seconds.
Proc.Natl.Acad.Sci.Usa, 102, 2005
1TS6
DownloadVisualize
BU of 1ts6 by Molmil
Structure of the pB2 intermediate from time-resolved Laue crystallography
Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
Authors:Ihee, H, Rajagopal, S, Srajer, V, Pahl, R, Anderson, S, Schmidt, M, Schotte, F, Anfinrud, P.A, Wulff, M, Moffat, K.
Deposit date:2004-06-21
Release date:2005-07-05
Last modified:2021-07-07
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Visualizing reaction pathways in photoactive yellow protein from nanoseconds to seconds.
Proc.Natl.Acad.Sci.Usa, 102, 2005
4E3Q
DownloadVisualize
BU of 4e3q by Molmil
PMP-bound form of Aminotransferase crystal structure from Vibrio fluvialis
Descriptor: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE, BENZAMIDINE, Pyruvate transaminase, ...
Authors:Midelfort, K.S, Kumar, R, Han, S, Karmilowicz, M.J, McConnell, K, Gehlhaar, D.K, Mistry, A, Chang, J.S, Anderson, M, Vilalobos, A, Minshull, J, Govindarajan, S, Wong, J.W.
Deposit date:2012-03-10
Release date:2012-10-10
Last modified:2013-01-02
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Redesigning and characterizing the substrate specificity and activity of Vibrio fluvialis aminotransferase for the synthesis of imagabalin.
Protein Eng.Des.Sel., 26, 2013
4KX6
DownloadVisualize
BU of 4kx6 by Molmil
Plasticity of the quinone-binding site of the complex II homolog quinol:fumarate reductase
Descriptor: FE2/S2 (INORGANIC) CLUSTER, FE3-S4 CLUSTER, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Singh, P.K, Sarwar, M, Maklashina, E, Kotlyar, V, Rajagukguk, S, Tomasiak, T.M, Cecchini, G, Iverson, T.M.
Deposit date:2013-05-24
Release date:2013-07-17
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Plasticity of the Quinone-binding Site of the Complex II Homolog Quinol:Fumarate Reductase.
J.Biol.Chem., 288, 2013
4LNV
DownloadVisualize
BU of 4lnv by Molmil
Crystal Structure of TEP1s
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Thioester-containing protein I
Authors:Le, B.V, Williams, M, Logarajah, S, Baxter, R.H.G.
Deposit date:2013-07-12
Release date:2013-07-24
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.7 Å)
Cite:Molecular basis for genetic resistance of Anopheles gambiae to Plasmodium: structural analysis of TEP1 susceptible and resistant alleles.
Plos Pathog., 8, 2012
3F72
DownloadVisualize
BU of 3f72 by Molmil
Crystal Structure of the Staphylococcus aureus pI258 CadC Metal Binding Site 2 Mutant
Descriptor: Cadmium efflux system accessory protein, SODIUM ION
Authors:Kandegedara, A, Thiyagarajan, S, Kondapalli, K.C, Stemmler, T.L, Rosen, B.P.
Deposit date:2008-11-07
Release date:2009-04-07
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:Role of bound Zn(II) in the CadC Cd(II)/Pb(II)/Zn(II)-responsive repressor.
J.Biol.Chem., 284, 2009
4G35
DownloadVisualize
BU of 4g35 by Molmil
Mcl-1 in complex with a biphenyl cross-linked Noxa peptide.
Descriptor: 4,4'-bis(bromomethyl)biphenyl, Induced myeloid leukemia cell differentiation protein Mcl-1 homolog, Noxa BH3 peptide (cysteine-mediated cross-linked)
Authors:Drake, E, Edwardraja, S, Lin, Q, Gulick, A.M.
Deposit date:2012-07-13
Release date:2012-12-05
Last modified:2013-06-26
Method:X-RAY DIFFRACTION (2 Å)
Cite:Rational design of proteolytically stable, cell-permeable peptide-based selective Mcl-1 inhibitors.
J.Am.Chem.Soc., 134, 2012
4D94
DownloadVisualize
BU of 4d94 by Molmil
Crystal Structure of TEP1r
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, ...
Authors:Le, B.V, Williams, M, Logarajah, S, Baxter, R.H.G.
Deposit date:2012-01-11
Release date:2012-10-17
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Molecular Basis for Genetic Resistance of Anopheles gambiae to Plasmodium: Structural Analysis of TEP1 Susceptible and Resistant Alleles.
Plos Pathog., 8, 2012
2HTO
DownloadVisualize
BU of 2hto by Molmil
Ruthenium hexammine ion interactions with Z-DNA
Descriptor: DNA (5'-D(*DCP*DGP*DCP*DGP*DCP*DA)-3'), DNA (5'-D(*DTP*DGP*DCP*DGP*DCP*DG)-3'), RUTHENIUM (III) HEXAAMINE ION
Authors:Bharanidharan, D, Thiyagarajan, S, Gautham, N.
Deposit date:2006-07-26
Release date:2006-08-08
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Hexammineruthenium(III) ion interactions with Z-DNA
Acta Crystallogr.,Sect.F, 63, 2007
2HTT
DownloadVisualize
BU of 2htt by Molmil
Ruthenium Hexammine ion interactions with Z-DNA
Descriptor: DNA (5'-D(*DCP*DGP*DCP*DGP*DCP*DA)-3'), DNA (5'-D(*DTP*DGP*DCP*DGP*DCP*DG)-3'), DNA (5'-D(P*DTP*DG)-3'), ...
Authors:Bharanidharan, D, Thiyagarajan, S, Gautham, N.
Deposit date:2006-07-26
Release date:2006-08-08
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Hexammineruthenium(III) ion interactions with Z-DNA
Acta Crystallogr.,Sect.F, 63, 2007
4QVF
DownloadVisualize
BU of 4qvf by Molmil
Crystal structure of Bcl-xL in complex with BIM BH3 domain
Descriptor: Bcl-2-like protein 1, Peptide from Bcl-2-like protein 11
Authors:Sreekanth, R, Yoon, H.S.
Deposit date:2014-07-15
Release date:2015-06-10
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.531 Å)
Cite:Bh3 induced conformational changes in Bcl-Xl revealed by crystal structure and comparative analysis.
Proteins, 83, 2015
4QVE
DownloadVisualize
BU of 4qve by Molmil
Crystal structure of Bcl-xL in complex with BID BH3 domain
Descriptor: Bcl-2-like protein 1, IMIDAZOLE, Peptide from BH3-interacting domain death agonist
Authors:Sreekanth, R, Yoon, H.S.
Deposit date:2014-07-14
Release date:2015-06-10
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Bh3 induced conformational changes in Bcl-Xl revealed by crystal structure and comparative analysis.
Proteins, 83, 2015
5Y41
DownloadVisualize
BU of 5y41 by Molmil
Crystal Structure of LIGAND-BOUND NURR1-LBD
Descriptor: (13E,15S)-15-hydroxy-9-oxoprosta-10,13-dien-1-oic acid, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Sreekanth, R, Lescar, J, Yoon, H.S.
Deposit date:2017-07-31
Release date:2018-12-26
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:PGE1 and PGA1 bind to Nurr1 and activate its transcriptional function.
Nat.Chem.Biol., 2020
6P69
DownloadVisualize
BU of 6p69 by Molmil
Crystal structure of FGFR1-Y563C (FGFR4 surrogate) covalently bound to compound 11.
Descriptor: 1,2-ETHANEDIOL, Fibroblast growth factor receptor 1, N-{2-[(6-{[(2,6-dichloro-3,5-dimethoxyphenyl)carbamoyl][3-(4-methylpiperazin-1-yl)propyl]amino}pyrimidin-4-yl)amino]phenyl}prop-2-enamide, ...
Authors:Larsen, N.A.
Deposit date:2019-06-03
Release date:2019-06-19
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:To be published
TBD
4HF2
DownloadVisualize
BU of 4hf2 by Molmil
Crystal Structure of E43A IscR mutant bound to its promoter
Descriptor: DNA (29-MER), HTH-type transcriptional regulator IscR
Authors:Rajagopalan, S.R, Phillips, K.J.
Deposit date:2012-10-04
Release date:2013-05-08
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.99 Å)
Cite:Studies of IscR reveal a unique mechanism for metal-dependent regulation of DNA binding specificity.
Nat.Struct.Mol.Biol., 20, 2013

222926

数据于2024-07-24公开中

PDB statisticsPDBj update infoContact PDBjnumon