3W7W
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 3w7w by Molmil](/molmil-images/mine/3w7w) | Crystal structure of E. coli YgjK E727A complexed with 2-O-alpha-D-glucopyranosyl-alpha-D-galactopyranose | Descriptor: | CALCIUM ION, MAGNESIUM ION, Uncharacterized protein YgjK, ... | Authors: | Miyazaki, T, Ichikawa, M, Yokoi, G, Kitaoka, M, Mori, H, Kitano, Y, Nishikawa, A, Tonozuka, T. | Deposit date: | 2013-03-08 | Release date: | 2013-07-17 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Structure of a bacterial glycoside hydrolase family 63 enzyme in complex with its glycosynthase product, and insights into the substrate specificity. Febs J., 280, 2013
|
|
3W9A
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 3w9a by Molmil](/molmil-images/mine/3w9a) | Crystal structure of the catalytic domain of the glycoside hydrolase family 131 protein from Coprinopsis cinerea | Descriptor: | GLYCEROL, Putative uncharacterized protein | Authors: | Miyazaki, T, Tanaka, Y, Tamura, M, Yoshida, M, Nishikawa, A, Tonozuka, T. | Deposit date: | 2013-04-01 | Release date: | 2013-05-22 | Last modified: | 2013-07-10 | Method: | X-RAY DIFFRACTION (1.99 Å) | Cite: | Crystal structure of the N-terminal domain of a glycoside hydrolase family 131 protein from Coprinopsis cinerea Febs Lett., 587, 2013
|
|
3W7X
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 3w7x by Molmil](/molmil-images/mine/3w7x) | Crystal structure of E. coli YgjK D324N complexed with melibiose | Descriptor: | CALCIUM ION, Uncharacterized protein YgjK, alpha-D-galactopyranose-(1-6)-alpha-D-glucopyranose | Authors: | Miyazaki, T, Ichikawa, M, Yokoi, G, Kitaoka, M, Mori, H, Kitano, Y, Nishikawa, A, Tonozuka, T. | Deposit date: | 2013-03-08 | Release date: | 2013-07-17 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.7 Å) | Cite: | Structure of a bacterial glycoside hydrolase family 63 enzyme in complex with its glycosynthase product, and insights into the substrate specificity. Febs J., 280, 2013
|
|
3WWG
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 3wwg by Molmil](/molmil-images/mine/3wwg) | Crystal structure of the N-glycan-deficient variant N448A of isopullulanase complexed with isopanose | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, Isopullulanase, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, ... | Authors: | Miyazaki, T, Yashiro, H, Nishikawa, A, Tonozuka, T. | Deposit date: | 2014-06-17 | Release date: | 2014-11-12 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | The side chain of a glycosylated asparagine residue is important for the stability of isopullulanase J.Biochem., 157, 2015
|
|
3A0J
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 3a0j by Molmil](/molmil-images/mine/3a0j) | Crystal structure of cold shock protein 1 from Thermus thermophilus HB8 | Descriptor: | Cold shock protein | Authors: | Miyazaki, T, Nakagawa, N, Kuramitsu, S, Masui, R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2009-03-19 | Release date: | 2010-03-23 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.65 Å) | Cite: | The Biological Action of Cold Shock Protein 1 from Thermus thermophilus HB8 To be Published
|
|
7XTL
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 7xtl by Molmil](/molmil-images/mine/7xtl) | |
7XTN
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 7xtn by Molmil](/molmil-images/mine/7xtn) | Crystal structure of the C-terminal domain of Bombyx mori N-acetylglucosaminyltransferase IV in complex with N-acetylglucosamine | Descriptor: | 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, N-acetylglucosaminyltransferase IV | Authors: | Miyazaki, T, Oka, N, Mori, S. | Deposit date: | 2022-05-17 | Release date: | 2022-09-28 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (1.15 Å) | Cite: | Crystal structure and sugar-binding ability of the C-terminal domain of N-acetylglucosaminyltransferase IV establish a new carbohydrate-binding module family. Glycobiology, 32, 2022
|
|
7XTM
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 7xtm by Molmil](/molmil-images/mine/7xtm) | Crystal structure of the C-terminal domain of Bombyx mori N-acetylglucosaminyltransferase IV | Descriptor: | 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, N-acetylglucosaminyltransferase IV | Authors: | Miyazaki, T, Oka, N, Mori, S. | Deposit date: | 2022-05-17 | Release date: | 2022-09-28 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (1.47 Å) | Cite: | Crystal structure and sugar-binding ability of the C-terminal domain of N-acetylglucosaminyltransferase IV establish a new carbohydrate-binding module family. Glycobiology, 32, 2022
|
|
5ZOH
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 5zoh by Molmil](/molmil-images/mine/5zoh) | |
7FE1
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 7fe1 by Molmil](/molmil-images/mine/7fe1) | Crystal structure of GH92 alpha-1,2-mannosidase from Enterococcus faecalis ATCC 10100 in complex with methyl alpha-1,2-C-mannobioside | Descriptor: | 1,2-ETHANEDIOL, ACETIC ACID, Alpha-1,2-mannosidase, ... | Authors: | Miyazaki, T, Alonso-Gil, S. | Deposit date: | 2021-07-19 | Release date: | 2022-02-02 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.72 Å) | Cite: | Unlocking the Hydrolytic Mechanism of GH92 alpha-1,2-Mannosidases: Computation Inspires the use of C-Glycosides as Michaelis Complex Mimics. Chemistry, 28, 2022
|
|
7FE2
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 7fe2 by Molmil](/molmil-images/mine/7fe2) | Crystal structure of the mutant E494Q of GH92 alpha-1,2-mannosidase from Enterococcus faecalis ATCC 10100 in complex with alpha-1,2-mannobiose | Descriptor: | 1,2-ETHANEDIOL, ACETATE ION, Alpha-1,2-mannosidase, ... | Authors: | Miyazaki, T, Alonso-Gil, S. | Deposit date: | 2021-07-19 | Release date: | 2022-02-02 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.75 Å) | Cite: | Unlocking the Hydrolytic Mechanism of GH92 alpha-1,2-Mannosidases: Computation Inspires the use of C-Glycosides as Michaelis Complex Mimics. Chemistry, 28, 2022
|
|
6QZH
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 6qzh by Molmil](/molmil-images/mine/6qzh) | Structure of the human CC Chemokine Receptor 7 in complex with the intracellular allosteric antagonist Cmp2105 and the insertion protein Sialidase NanA | Descriptor: | 3-[[4-[[(1~{R})-2,2-dimethyl-1-(5-methylfuran-2-yl)propyl]amino]-1,1-bis(oxidanylidene)-1,2,5-thiadiazol-3-yl]amino]-~{N},~{N},6-trimethyl-2-oxidanyl-benzamide, C-C chemokine receptor type 7,Sialidase A,C-C chemokine receptor type 7, D(-)-TARTARIC ACID, ... | Authors: | Jaeger, K, Bruenle, S, Weinert, T, Guba, W, Muehle, J, Miyazaki, T, Weber, M, Furrer, A, Haenggi, N, Tetaz, T, Huang, C.Y, Mattle, D, Vonach, J.M, Gast, A, Kuglstatter, A, Rudolph, M.G, Nogly, P, Benz, J, Dawson, R.J.P, Standfuss, J. | Deposit date: | 2019-03-11 | Release date: | 2019-09-04 | Last modified: | 2024-01-24 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Structural Basis for Allosteric Ligand Recognition in the Human CC Chemokine Receptor 7. Cell, 178, 2019
|
|
8WG1
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 8wg1 by Molmil](/molmil-images/mine/8wg1) | Crystal structure of GH97 glucodextranase mutant E509Q from Flavobacterium johnsoniae in complex with panose | Descriptor: | 1,2-ETHANEDIOL, CALCIUM ION, Candidate alpha-glucosidase Glycoside hydrolase family 97, ... | Authors: | Kurata, R, Nakamura, S, Miyazaki, T. | Deposit date: | 2023-09-20 | Release date: | 2024-05-08 | Last modified: | 2024-07-31 | Method: | X-RAY DIFFRACTION (2.34 Å) | Cite: | Structural insights into alpha-(1→6)-linkage preference of GH97 glucodextranase from Flavobacterium johnsoniae. Febs J., 291, 2024
|
|
8WG0
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 8wg0 by Molmil](/molmil-images/mine/8wg0) | Crystal structure of GH97 glucodextranase from Flavobacterium johnsoniae in complex with glucose | Descriptor: | 1,2-ETHANEDIOL, CALCIUM ION, Candidate alpha-glucosidase Glycoside hydrolase family 97, ... | Authors: | Kurata, R, Nakamura, S, Miyazaki, T. | Deposit date: | 2023-09-20 | Release date: | 2024-05-08 | Last modified: | 2024-07-31 | Method: | X-RAY DIFFRACTION (1.95 Å) | Cite: | Structural insights into alpha-(1→6)-linkage preference of GH97 glucodextranase from Flavobacterium johnsoniae. Febs J., 291, 2024
|
|
8WG2
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 8wg2 by Molmil](/molmil-images/mine/8wg2) | Crystal structure of GH97 glucodextranase mutant E509Q from Flavobacterium johnsoniae in complex with isomaltotriose | Descriptor: | CALCIUM ION, Candidate alpha-glucosidase Glycoside hydrolase family 97, alpha-D-glucopyranose-(1-6)-alpha-D-glucopyranose-(1-6)-alpha-D-glucopyranose, ... | Authors: | Kurata, R, Nakamura, S, Miyazaki, T. | Deposit date: | 2023-09-20 | Release date: | 2024-05-08 | Last modified: | 2024-07-31 | Method: | X-RAY DIFFRACTION (2.45 Å) | Cite: | Structural insights into alpha-(1→6)-linkage preference of GH97 glucodextranase from Flavobacterium johnsoniae. Febs J., 291, 2024
|
|
2EGY
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 2egy by Molmil](/molmil-images/mine/2egy) | Crystal structure of LysN, alpha-aminoadipate aminotransferase (substrate free form), from Thermus thermophilus HB27 | Descriptor: | Alpha-aminodipate aminotransferase, PYRIDOXAL-5'-PHOSPHATE | Authors: | Tomita, T, Miyazaki, T, Miyagawa, T, Fushinobu, S, Kuzuyama, T, Nishiyama, M. | Deposit date: | 2007-03-02 | Release date: | 2008-03-04 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.67 Å) | Cite: | Crystal structure of LysN, alpha-aminoadipate aminotransferase, from Thermus thermophilus HB27 To be Published
|
|
8IUA
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 8iua by Molmil](/molmil-images/mine/8iua) | |
8IU8
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 8iu8 by Molmil](/molmil-images/mine/8iu8) | |
8IU9
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 8iu9 by Molmil](/molmil-images/mine/8iu9) | |
8IUB
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 8iub by Molmil](/molmil-images/mine/8iub) | |
8IUC
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 8iuc by Molmil](/molmil-images/mine/8iuc) | |
8J53
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 8j53 by Molmil](/molmil-images/mine/8j53) | |
8J51
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 8j51 by Molmil](/molmil-images/mine/8j51) | |
8J50
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 8j50 by Molmil](/molmil-images/mine/8j50) | |
8J52
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 8j52 by Molmil](/molmil-images/mine/8j52) | Crystal structure of Flavihumibacter petaseus GH31 alpha-galactosidase mutant D304A in complex with alpha-1,4-galactobiose | Descriptor: | 1,2-ETHANEDIOL, CHLORIDE ION, GH31 alpha-galactosidase, ... | Authors: | Ikegaya, M, Miyazaki, T. | Deposit date: | 2023-04-21 | Release date: | 2023-07-26 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Structure-function analysis of bacterial GH31 alpha-galactosidases specific for alpha-(1→4)-galactobiose. Febs J., 290, 2023
|
|