Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
4FLY
DownloadVisualize
BU of 4fly by Molmil
Pyrococcus abyssi B family DNA polymerase bound to a dsDNA, in edition mode
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, DNA polymerase 1, MAGNESIUM ION, ...
Authors:Gouge, J, Delarue, M.
Deposit date:2012-06-15
Release date:2012-08-29
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Molecular Recognition of Canonical and Deaminated Bases by P. abyssi Family B DNA Polymerase.
J.Mol.Biol., 423, 2012
4FLX
DownloadVisualize
BU of 4flx by Molmil
Pyrococcus abyssi B family DNA polymerase bound to a dsDNA, in edition mode
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, DNA polymerase 1, GLYCEROL, ...
Authors:Gouge, J, Delarue, M.
Deposit date:2012-06-15
Release date:2012-08-29
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Molecular Recognition of Canonical and Deaminated Bases by P. abyssi Family B DNA Polymerase.
J.Mol.Biol., 423, 2012
4FLW
DownloadVisualize
BU of 4flw by Molmil
Pyrococcus abyssi B family DNA polymerase bound to a dsDNA, in edition mode
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, DNA polymerase 1, GLYCEROL, ...
Authors:Gouge, J, Delarue, M.
Deposit date:2012-06-15
Release date:2012-08-29
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Molecular Recognition of Canonical and Deaminated Bases by P. abyssi Family B DNA Polymerase.
J.Mol.Biol., 423, 2012
4FM2
DownloadVisualize
BU of 4fm2 by Molmil
Pyrococcus abyssi B family DNA polymerase (triple mutant) bound to a dsDNA, in edition mode
Descriptor: DNA polymerase 1, GLYCEROL, MAGNESIUM ION, ...
Authors:Gouge, J, Delarue, M.
Deposit date:2012-06-15
Release date:2012-08-29
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Molecular Recognition of Canonical and Deaminated Bases by P. abyssi Family B DNA Polymerase.
J.Mol.Biol., 423, 2012
4FLT
DownloadVisualize
BU of 4flt by Molmil
Pyrococcus abyssi B family DNA polymerase bound to a dsDNA, in edition mode
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, DNA polymerase 1, GLYCEROL, ...
Authors:Gouge, J, Delarue, M.
Deposit date:2012-06-15
Release date:2012-08-29
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Molecular Recognition of Canonical and Deaminated Bases by P. abyssi Family B DNA Polymerase.
J.Mol.Biol., 423, 2012
4FM1
DownloadVisualize
BU of 4fm1 by Molmil
Pyrococcus abyssi B family DNA polymerase bound to a dsDNA, in edition mode
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, DNA polymerase 1, GLYCEROL, ...
Authors:Gouge, J, Delarue, M.
Deposit date:2012-06-15
Release date:2012-08-29
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Molecular Recognition of Canonical and Deaminated Bases by P. abyssi Family B DNA Polymerase.
J.Mol.Biol., 423, 2012
1G3U
DownloadVisualize
BU of 1g3u by Molmil
CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS THYMIDYLATE KINASE COMPLEXED WITH THYMIDINE MONOPHOSPHATE (TMP)
Descriptor: MAGNESIUM ION, SULFATE ION, THYMIDINE-5'-PHOSPHATE, ...
Authors:Li de la Sierra, I, Munier-Lehmann, H, Gilles, A.M, Barzu, O, Delarue, M.
Deposit date:2000-10-25
Release date:2001-10-25
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:X-ray structure of TMP kinase from Mycobacterium tuberculosis complexed with TMP at 1.95 A resolution.
J.Mol.Biol., 311, 2001
1PYS
DownloadVisualize
BU of 1pys by Molmil
PHENYLALANYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS
Descriptor: MAGNESIUM ION, PHENYLALANYL-TRNA SYNTHETASE
Authors:Safro, M, Mosyak, L, Goldgur, Y, Reshetnikova, L, Delarue, M.
Deposit date:1996-11-14
Release date:1997-11-19
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structure of phenylalanyl-tRNA synthetase from Thermus thermophilus.
Nat.Struct.Biol., 2, 1995
7ODX
DownloadVisualize
BU of 7odx by Molmil
Cyanophage S-2L Succinoaminodeoxyadenylate synthetase (PurZ) bound to dGMP and dATP as an energy donor
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE, Succinoaminodeoxyadenylate synthetase (PurZ)
Authors:Czernecki, D, Delarue, M.
Deposit date:2021-04-30
Release date:2021-09-01
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.69617081 Å)
Cite:Characterization of a triad of genes in cyanophage S-2L sufficient to replace adenine by 2-aminoadenine in bacterial DNA.
Nat Commun, 12, 2021
7ODY
DownloadVisualize
BU of 7ody by Molmil
Cyanophage S-2L MazG-like pyrophosphohydrolase bound to dGDP and three catalytic Mn2+ ions per active site
Descriptor: 2'-DEOXYGUANOSINE-5'-DIPHOSPHATE, MANGANESE (II) ION, MazG-like pyrophosphohydrolase (MazZ), ...
Authors:Czernecki, D, Delarue, M.
Deposit date:2021-04-30
Release date:2021-09-01
Method:X-RAY DIFFRACTION (1.43 Å)
Cite:Characterization of a triad of genes in cyanophage S-2L sufficient to replace adenine by 2-aminoadenine in bacterial DNA.
Nat Commun, 12, 2021
3TLU
DownloadVisualize
BU of 3tlu by Molmil
The GLIC pentameric Ligand-Gated Ion Channel Loop2-24' oxidized mutant in a locally-closed conformation (LC1 subtype)
Descriptor: CHLORIDE ION, DODECYL-BETA-D-MALTOSIDE, Glr4197 protein
Authors:Sauguet, L, Nury, H, Corringer, P.J, Delarue, M.
Deposit date:2011-08-30
Release date:2012-05-16
Last modified:2012-06-27
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:A locally closed conformation of a bacterial pentameric proton-gated ion channel.
Nat.Struct.Mol.Biol., 19, 2012
3TLW
DownloadVisualize
BU of 3tlw by Molmil
The GLIC pentameric Ligand-Gated Ion Channel Loop2-21' oxidized mutant in a locally-closed conformation (LC2 subtype)
Descriptor: CHLORIDE ION, DODECYL-BETA-D-MALTOSIDE, Glr4197 protein
Authors:Sauguet, L, Nury, H, Corringer, P.J, Delarue, M.
Deposit date:2011-08-30
Release date:2012-05-16
Last modified:2012-06-27
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:A locally closed conformation of a bacterial pentameric proton-gated ion channel.
Nat.Struct.Mol.Biol., 19, 2012
6T7Y
DownloadVisualize
BU of 6t7y by Molmil
Structure of PCNA bound to cPIP motif of DP2 from P. abyssi
Descriptor: DNA polymerase sliding clamp, cPIP motif from the DP2 large subunit of PolD
Authors:Madru, C, Raia, P, Hugonneau Beaufet, I, Delarue, M, Carroni, M, Sauguet, L.
Deposit date:2019-10-23
Release date:2020-03-04
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural basis for the increased processivity of D-family DNA polymerases in complex with PCNA.
Nat Commun, 11, 2020
6T8H
DownloadVisualize
BU of 6t8h by Molmil
Cryo-EM structure of the DNA-bound PolD-PCNA processive complex from P. abyssi
Descriptor: DNA polymerase II small subunit, DNA polymerase sliding clamp, DNA primer, ...
Authors:Madru, C, Raia, P, Hugonneau Beaufet, I, Pehau-Arnaudet, G, England, P, Lindhal, E, Delarue, M, Carroni, M, Sauguet, L.
Deposit date:2019-10-24
Release date:2020-03-04
Last modified:2020-04-08
Method:ELECTRON MICROSCOPY (3.77 Å)
Cite:Structural basis for the increased processivity of D-family DNA polymerases in complex with PCNA.
Nat Commun, 11, 2020
6T7X
DownloadVisualize
BU of 6t7x by Molmil
Crystal structure of PCNA from P. abyssi
Descriptor: DNA polymerase sliding clamp
Authors:Madru, C, Raia, P, Hugonneau Beaufet, I, Delarue, M, Carroni, M, Sauguet, L.
Deposit date:2019-10-23
Release date:2020-03-04
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for the increased processivity of D-family DNA polymerases in complex with PCNA.
Nat Commun, 11, 2020
5HCJ
DownloadVisualize
BU of 5hcj by Molmil
Cationic Ligand-Gated Ion Channel
Descriptor: CHLORIDE ION, DODECYL-BETA-D-MALTOSIDE, Proton-gated ion channel, ...
Authors:Shahsavar, A, Sauguet, L, Delarue, M.
Deposit date:2016-01-04
Release date:2016-04-13
Last modified:2016-04-20
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Sites of Anesthetic Inhibitory Action on a Cationic Ligand-Gated Ion Channel.
Structure, 24, 2016
5HCM
DownloadVisualize
BU of 5hcm by Molmil
The GLIC pentameric Ligand-Gated Ion Channel 2-21' cross-linked mutant complexed to bromoform
Descriptor: DODECYL-BETA-D-MALTOSIDE, Proton-gated ion channel, TRIBROMOMETHANE
Authors:Shahsavar, A, Sauguet, L, Delarue, M.
Deposit date:2016-01-04
Release date:2016-04-13
Last modified:2016-04-20
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:Sites of Anesthetic Inhibitory Action on a Cationic Ligand-Gated Ion Channel.
Structure, 24, 2016
4ZZC
DownloadVisualize
BU of 4zzc by Molmil
The GLIC pentameric Ligand-Gated Ion Channel open form complexed to xenon
Descriptor: ACETATE ION, CHLORIDE ION, DIUNDECYL PHOSPHATIDYL CHOLINE, ...
Authors:Sauguet, L, Fourati, Z, Prange, T, Delarue, M, Colloc'h, N.
Deposit date:2015-05-22
Release date:2016-03-02
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural Basis for Xenon Inhibition in a Cationic Pentameric Ligand-Gated Ion Channel.
Plos One, 11, 2016
4ZZB
DownloadVisualize
BU of 4zzb by Molmil
The GLIC pentameric Ligand-Gated Ion Channel Locally-closed form complexed to xenon
Descriptor: ACETATE ION, CHLORIDE ION, DODECYL-BETA-D-MALTOSIDE, ...
Authors:Sauguet, L, Fourati, Z, Prange, T, Delarue, M, Colloc'h, N.
Deposit date:2015-05-22
Release date:2016-03-02
Last modified:2018-11-21
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Structural Basis for Xenon Inhibition in a Cationic Pentameric Ligand-Gated Ion Channel.
Plos One, 11, 2016
3IG0
DownloadVisualize
BU of 3ig0 by Molmil
crystal structure of the second part of the Mycobacterium tuberculosis DNA gyrase reaction core: the TOPRIM domain at 2.1 A resolution
Descriptor: DNA gyrase subunit B
Authors:Piton, J, Aubry, A, Delarue, M, Mayer, C.
Deposit date:2009-07-27
Release date:2010-07-28
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural insights into the quinolone resistance mechanism of Mycobacterium tuberculosis DNA gyrase.
Plos One, 5, 2010
3IFZ
DownloadVisualize
BU of 3ifz by Molmil
crystal structure of the first part of the Mycobacterium tuberculosis DNA gyrase reaction core: the breakage and reunion domain at 2.7 A resolution
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, DNA gyrase subunit A, SODIUM ION
Authors:Piton, J, Aubry, A, Delarue, M, Mayer, C.
Deposit date:2009-07-27
Release date:2010-07-28
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural insights into the quinolone resistance mechanism of Mycobacterium tuberculosis DNA gyrase.
Plos One, 5, 2010
1G51
DownloadVisualize
BU of 1g51 by Molmil
ASPARTYL TRNA SYNTHETASE FROM THERMUS THERMOPHILUS AT 2.4 A RESOLUTION
Descriptor: ADENOSINE MONOPHOSPHATE, ASPARTYL-ADENOSINE-5'-MONOPHOSPHATE, ASPARTYL-TRNA SYNTHETASE, ...
Authors:Poterzsman, A, Delarue, M, Thierry, J.C, Moras, D.
Deposit date:2000-10-30
Release date:2000-12-06
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Synthesis and recognition of aspartyl-adenylate by Thermus thermophilus aspartyl-tRNA synthetase.
J.Mol.Biol., 244, 1994
3IGQ
DownloadVisualize
BU of 3igq by Molmil
Crystal structure of the extracellular domain of a bacterial pentameric ligand-gated ion channel
Descriptor: ACETIC ACID, CHLORIDE ION, Glr4197 protein, ...
Authors:Nury, H, Delarue, M.
Deposit date:2009-07-28
Release date:2009-12-08
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of the extracellular domain of a bacterial ligand-gated ion channel
J.Mol.Biol., 395, 2010
3FI0
DownloadVisualize
BU of 3fi0 by Molmil
Crystal Structure Analysis of B. stearothermophilus Tryptophanyl-tRNA Synthetase Complexed with Tryptophan, AMP, and Inorganic Phosphate
Descriptor: ADENOSINE MONOPHOSPHATE, PHOSPHATE ION, TRYPTOPHAN, ...
Authors:Laowanapiban, P, Kapustina, M, Vonrhein, C, Delarue, M, Koehl, P, Carter Jr, C.W.
Deposit date:2008-12-10
Release date:2009-02-03
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Independent saturation of three TrpRS subsites generates a partially assembled state similar to those observed in molecular simulations.
Proc.Natl.Acad.Sci.Usa, 106, 2009
3FHJ
DownloadVisualize
BU of 3fhj by Molmil
Independent saturation of three TrpRS subsites generates a partially-assembled state similar to those observed in molecular simulations
Descriptor: ADENOSINE MONOPHOSPHATE, PHOSPHATE ION, TRYPTOPHAN, ...
Authors:Laowanapiban, P, Kapustina, M, Vonrhein, C, Delarue, M, Koehl, P, Carter Jr, C.W.
Deposit date:2008-12-09
Release date:2009-02-03
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Independent saturation of three TrpRS subsites generates a partially assembled state similar to those observed in molecular simulations.
Proc.Natl.Acad.Sci.Usa, 106, 2009

221051

数据于2024-06-12公开中

PDB statisticsPDBj update infoContact PDBjnumon