Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
6YI6
DownloadVisualize
BU of 6yi6 by Molmil
Structural and Kinetic Evaluation of Phosphoramidate Inhibitors on Thermolysin
Descriptor: (2~{S})-2-[[(2~{S})-4-methyl-2-[[oxidanyl-[(1~{S})-2-phenyl-1-(phenylmethoxycarbonylamino)ethyl]phosphoryl]amino]pentanoyl]amino]propanoic acid, CALCIUM ION, CESIUM ION, ...
Authors:Kljajic, M, Heine, A, Klebe, G.
Deposit date:2020-04-01
Release date:2021-04-14
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.44 Å)
Cite:Structural and Kinetic Evaluation of Phosphoramidate Inhibitors on Thermolysin
To Be Published
4UUR
DownloadVisualize
BU of 4uur by Molmil
Cold-adapted truncated hemoglobin from the Antarctic marine bacterium Pseudoalteromonas haloplanktis TAC125
Descriptor: PROTOPORPHYRIN IX CONTAINING FE, PUTATIVE HEMOGLOBIN-LIKE OXYGEN-BINDING PROTEIN
Authors:Pesce, A, Giordano, D, Riccio, A, Nardini, M, Caldelli, E, Howes, B, Bustamante, J.P, Boechi, L, Estrin, D, di Prisco, G, Smulevich, G, Verde, C, Bolognesi, M.
Deposit date:2014-07-31
Release date:2015-06-10
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Structural Flexibility of the Heme Cavity in the Cold-Adapted Truncated Hemoglobin from the Antarctic Marine Bacterium Pseudoalteromonas Haloplanktis Tac125.
FEBS J., 282, 2015
6YJL
DownloadVisualize
BU of 6yjl by Molmil
Solution NMR structure of the C-terminal arm of RSV nucleoprotein
Descriptor: Nucleoprotein
Authors:Cardone, C, Eleouet, J.-F, Galloux, M, Sizun, C.
Deposit date:2020-04-03
Release date:2021-04-14
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Solution NMR structure of the C-terminal arm of RSV nucleoprotein
To Be Published
6YJE
DownloadVisualize
BU of 6yje by Molmil
Plasmoodium vivax phosphoglycerate kinase bound to nitrofuran inhibitor from PEG3350 and ammonium acetate at pH 5.5
Descriptor: (2~{S})-2-(5-nitrofuran-2-yl)-2,3,5,6,7,8-hexahydro-1~{H}-[1]benzothiolo[2,3-d]pyrimidin-4-one, Phosphoglycerate kinase
Authors:Blaszczyk, B.K, Hyvonen, M.
Deposit date:2020-04-03
Release date:2021-04-14
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Phosphoglycerate Kinase as a potential target for antimalarial therapy
to be published
6YMS
DownloadVisualize
BU of 6yms by Molmil
Structural and Kinetic Evaluation of Phosphoramidate Inhibitors on Thermolysin
Descriptor: (2~{S})-4-methyl-2-[2-[[oxidanyl-[(1~{S})-2-phenyl-1-(phenylmethoxycarbonylamino)ethyl]phosphoryl]amino]ethanoylamino]pentanoic acid, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, ...
Authors:Kljajic, M, Heine, A, Klebe, G.
Deposit date:2020-04-09
Release date:2021-04-21
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.32 Å)
Cite:Structural and Kinetic Evaluation of Phosphoramidate Inhibitors on Thermolysin
To Be Published
6YMR
DownloadVisualize
BU of 6ymr by Molmil
Structural and Kinetic Evaluation of Phosphoramidate Inhibitors on Thermolysin
Descriptor: (((R)-1-(((benzyloxy)carbonyl)amino)-2-phenylethyl)oxidophosphoryl)glycyl-L-leucinate, CALCIUM ION, DIMETHYL SULFOXIDE, ...
Authors:Kljajic, M, Heine, A, Klebe, G.
Deposit date:2020-04-09
Release date:2021-04-21
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural and Kinetic Evaluation of Phosphoramidate Inhibitors on Thermolysin
To Be Published
6YM3
DownloadVisualize
BU of 6ym3 by Molmil
Crystal structure of Compound 1 with PIP4K2A
Descriptor: (2~{R})-2-[[3-cyano-2-[4-(2-ethoxyphenyl)phenyl]-5,8-dihydro-1,7-naphthyridin-4-yl]amino]propanoic acid, PHOSPHATE ION, Phosphatidylinositol 5-phosphate 4-kinase type-2 alpha
Authors:Holton, S.J, Wortmann, L, Braeuer, N, Irlbacher, H, Weiske, J, Lechner, C, Meier, R, Puetter, V, Christ, C, ter Laak, T, Lienau, P, Lesche, R, Nicke, B, Bauser, M, Haegebarth, A, von Nussbaum, F, Mumberg, D, Lemos, C.
Deposit date:2020-04-07
Release date:2021-04-14
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Discovery and Characterization of the Potent and Highly Selective 1,7-Naphthyridine-Based Inhibitors BAY-091 and BAY-297 of the Kinase PIP4K2A.
J.Med.Chem., 64, 2021
6YM4
DownloadVisualize
BU of 6ym4 by Molmil
Crystal structure of BAY-297 with PIP4K2A
Descriptor: (2~{R})-2-[[2-[4-(3-chloranyl-2-fluoranyl-phenyl)phenyl]-3-cyano-1,7-naphthyridin-4-yl]amino]butanamide, GLYCEROL, Phosphatidylinositol 5-phosphate 4-kinase type-2 alpha
Authors:Holton, S.J, Wortmann, L, Braeuer, N, Irlbacher, H, Weiske, J, Lechner, C, Meier, R, Puetter, V, Christ, C, ter Laak, T, Lienau, P, Lesche, R, Nicke, B, Bauser, M, Haegebarth, A, von Nussbaum, F, Mumberg, D, Lemos, C.
Deposit date:2020-04-07
Release date:2021-04-14
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Discovery and Characterization of the Potent and Highly Selective 1,7-Naphthyridine-Based Inhibitors BAY-091 and BAY-297 of the Kinase PIP4K2A.
J.Med.Chem., 64, 2021
6YOU
DownloadVisualize
BU of 6you by Molmil
Crystal structure of the cAMP-dependent protein kinase A in complex with Pyrido[3,2-d]pyrimidin-4-amine (soaked)
Descriptor: cAMP-dependent protein kinase catalytic subunit alpha, pyrido[3,2-d]pyrimidin-4-amine
Authors:Oebbeke, M, Heine, A, Klebe, G.
Deposit date:2020-04-15
Release date:2021-04-28
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Fragment based drug design - Small chemical changes of fragments effecting big changes in binding
To Be Published
6YPP
DownloadVisualize
BU of 6ypp by Molmil
Crystal structure of the cAMP-dependent protein kinase A cocrystallized with PKI (5-24). Soaking of aminofasudil and displacing it with the fragment isoquinoline.
Descriptor: ISOQUINOLINE, cAMP-dependent protein kinase catalytic subunit alpha, cAMP-dependent protein kinase inhibitor alpha
Authors:Oebbeke, M, Gerber, H.-D, Heine, A, Klebe, G.
Deposit date:2020-04-16
Release date:2021-04-28
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Fluorescence-based displacement experiments
To Be Published
6YOT
DownloadVisualize
BU of 6yot by Molmil
Crystal structure of the cAMP-dependent protein kinase A cocrystallized with N,N-dimethylisoquinoline-5-sulfonamide and PKI (5-24)
Descriptor: cAMP-dependent protein kinase catalytic subunit alpha, cAMP-dependent protein kinase inhibitor alpha, ~{N},~{N}-dimethylisoquinoline-5-sulfonamide
Authors:Oebbeke, M, Heine, A, Klebe, G.
Deposit date:2020-04-15
Release date:2021-04-28
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Fragment based drug design - Small chemical changes of fragments effecting big changes in binding
To Be Published
6YPW
DownloadVisualize
BU of 6ypw by Molmil
Crystal structure for the complex of human carbonic anhydrase II and 4-((1-(2-(hydroxymethyl)-5-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)tetrahydrofuran-3-yl)-1H-1,2,3-triazol-4-yl)methoxy)benzenesulfonamide
Descriptor: 4-[[1-[(2~{S},3~{S},5~{R})-2-(hydroxymethyl)-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]oxolan-3-yl]-1,2,3-triazol-4-yl]methoxy]benzenesulfonamide, Carbonic anhydrase 2, ZINC ION
Authors:Angeli, A, Ferraroni, M.
Deposit date:2020-04-16
Release date:2021-04-28
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Mechanisms of the Antiproliferative and Antitumor Activity of Novel Telomerase-Carbonic Anhydrase Dual-Hybrid Inhibitors.
J.Med.Chem., 64, 2021
4W8X
DownloadVisualize
BU of 4w8x by Molmil
Crystal Structure of Cmr1 from Pyrococcus furiosus bound to a nucleotide
Descriptor: CRISPR system Cmr subunit Cmr1-1, GUANOSINE-3'-MONOPHOSPHATE, PHOSPHATE ION
Authors:Benda, C, Ebert, J, Baumgaertner, M, Conti, E.
Deposit date:2014-08-26
Release date:2014-10-15
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural Model of a CRISPR RNA-Silencing Complex Reveals the RNA-Target Cleavage Activity in Cmr4.
Mol.Cell, 56, 2014
6YS0
DownloadVisualize
BU of 6ys0 by Molmil
Transaldolase variant D211A from T. acidophilum in complex with D-fructose 6-phosphate Schiff-base intermediate
Descriptor: ACETATE ION, FRUCTOSE -6-PHOSPHATE, GLYCEROL, ...
Authors:Sautner, V, Klaus, M, Tittmann, K.
Deposit date:2020-04-20
Release date:2021-05-12
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Large-scale motions underlie physical but not chemical steps in transaldolase mechanism: Substrate binding by conformational selection and rate-determining product release
To Be Published
6YRM
DownloadVisualize
BU of 6yrm by Molmil
Transaldolase variant T30A from T. acidophilum in complex with D-fructose 6-phosphate Schiff-base intermediate
Descriptor: ACETATE ION, FRUCTOSE -6-PHOSPHATE, GLYCEROL, ...
Authors:Sautner, V, Klaus, M, Tittmann, K.
Deposit date:2020-04-20
Release date:2021-05-12
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Large-scale motions underlie physical but not chemical steps in transaldolase mechanism: Substrate binding by conformational selection and rate-determining product release
To Be Published
6YRT
DownloadVisualize
BU of 6yrt by Molmil
Transaldolase variant T30D from T. acidophilum in complex with D-fructose 6-phosphate Schiff-base intermediate
Descriptor: ACETATE ION, FRUCTOSE -6-PHOSPHATE, GLYCEROL, ...
Authors:Sautner, V, Klaus, M, Tittmann, K.
Deposit date:2020-04-20
Release date:2021-05-12
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Large-scale motions underlie physical but not chemical steps in transaldolase mechanism: Substrate binding by conformational selection and rate-determining product release
To Be Published
4W8Y
DownloadVisualize
BU of 4w8y by Molmil
Structure of full length Cmr2 from Pyrococcus furiosus (Manganese bound form)
Descriptor: CRISPR system Cmr subunit Cmr2, MANGANESE (II) ION, ZINC ION
Authors:Benda, C, Ebert, J, Baumgaertner, M, Conti, E.
Deposit date:2014-08-26
Release date:2014-10-15
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural Model of a CRISPR RNA-Silencing Complex Reveals the RNA-Target Cleavage Activity in Cmr4.
Mol.Cell, 56, 2014
6Y1T
DownloadVisualize
BU of 6y1t by Molmil
The crystal structure of engineered cytochrome c peroxidase from Saccharomyces cerevisiae with a Trp51 to S-Trp51 modification
Descriptor: 1,2-ETHANEDIOL, Cytochrome c peroxidase, mitochondrial, ...
Authors:Ortmayer, M, Levy, C, Green, A.P.
Deposit date:2020-02-13
Release date:2021-06-16
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:A Noncanonical Tryptophan Analogue Reveals an Active Site Hydrogen Bond Controlling Ferryl Reactivity in a Heme Peroxidase.
Jacs Au, 1, 2021
6Y2Y
DownloadVisualize
BU of 6y2y by Molmil
The crystal structure of engineered cytochrome c peroxidase from Saccharomyces cerevisiae with Trp51 to S-Trp51 and Trp191Phe modifications
Descriptor: 1,2-ETHANEDIOL, Cytochrome c peroxidase, mitochondrial, ...
Authors:Ortmayer, M, Levy, C, Green, A.P.
Deposit date:2020-02-17
Release date:2021-06-16
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:A Noncanonical Tryptophan Analogue Reveals an Active Site Hydrogen Bond Controlling Ferryl Reactivity in a Heme Peroxidase.
Jacs Au, 1, 2021
4WAB
DownloadVisualize
BU of 4wab by Molmil
Crystal structure of mPGES1 solved by native-SAD phasing
Descriptor: 2-[[2,6-bis(chloranyl)-3-[(2,2-dimethylpropanoylamino)methyl]phenyl]amino]-1-methyl-6-(2-methyl-2-oxidanyl-propoxy)-N-[2,2,2-tris(fluoranyl)ethyl]benzimidazole-5-carboxamide, GLUTATHIONE, Prostaglandin E synthase,Leukotriene C4 synthase
Authors:Weinert, T, Li, D, Howe, N, Caffrey, M, Wang, M.
Deposit date:2014-08-29
Release date:2014-12-10
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.704 Å)
Cite:Fast native-SAD phasing for routine macromolecular structure determination.
Nat.Methods, 12, 2015
6YR6
DownloadVisualize
BU of 6yr6 by Molmil
14-3-3 sigma in complex with hDM2-186 peptide
Descriptor: 14-3-3 protein sigma, 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, IODIDE ION, ...
Authors:Wolter, M, Srdanovic, S, Warriner, S, Wilson, A, Ottmann, C.
Deposit date:2020-04-19
Release date:2021-11-03
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Understanding the interaction of 14-3-3 proteins with hDMX and hDM2: a structural and biophysical study.
Febs J., 2022
6YR7
DownloadVisualize
BU of 6yr7 by Molmil
14-3-3 sigma in complex with hDMX-342+367 peptide
Descriptor: 14-3-3 protein sigma, 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Protein Mdm4
Authors:Wolter, M, Srdanovic, S, Warriner, S, Wilson, A, Ottmann, C.
Deposit date:2020-04-19
Release date:2021-11-03
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.105 Å)
Cite:Understanding the interaction of 14-3-3 proteins with hDMX and hDM2: a structural and biophysical study.
Febs J., 2022
6YR5
DownloadVisualize
BU of 6yr5 by Molmil
14-3-3 sigma in complex with hDMX-367 peptide
Descriptor: 14-3-3 protein sigma, Protein Mdm4, SULFATE ION
Authors:Wolter, M, Srdanovic, S, Ottman, C, Warriner, S, Wilson, A.
Deposit date:2020-04-19
Release date:2021-11-03
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Understanding the interaction of 14-3-3 proteins with hDMX and hDM2: a structural and biophysical study.
Febs J., 2022
6MTX
DownloadVisualize
BU of 6mtx by Molmil
Crystal structure of a human anti-ZIKV-DENV neutralizing antibody MZ1 isolated following ZPIV vaccination
Descriptor: GLYCEROL, MZ1 Heavy Chain, MZ1 Light Chain
Authors:Sankhala, R.S, Dussupt, V, Donofrio, G, Choe, M, Modjarrad, K, Michael, N.L, Krebs, S.J, Joyce, M.G.
Deposit date:2018-10-22
Release date:2019-12-25
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.051 Å)
Cite:Potent Zika and dengue cross-neutralizing antibodies induced by Zika vaccination in a dengue-experienced donor.
Nat Med, 26, 2020
6Y95
DownloadVisualize
BU of 6y95 by Molmil
Ca2+-free Calmodulin mutant N53I
Descriptor: Calmodulin
Authors:Holt, C, Hamborg, L.N, Lau, K, Brohus, M, Sorensen, A.B, Larsen, K.T, Sommer, C, Petegem, F.V, Overgaard, M.T, Wimmer, R.
Deposit date:2020-03-06
Release date:2020-04-29
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:The arrhythmogenic N53I variant subtly changes the structure and dynamics in the calmodulin N-terminal domain, altering its interaction with the cardiac ryanodine receptor.
J.Biol.Chem., 295, 2020

221716

数据于2024-06-26公开中

PDB statisticsPDBj update infoContact PDBjnumon