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2F88
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BU of 2f88 by Molmil
Solution NMR structure of domain 5 from the Pyaiella littoralis (PL) group II intron
Descriptor: D5-PL RNA RIBOZYME DOMAIN
Authors:Dayie, K.T.
Deposit date:2005-12-02
Release date:2006-02-28
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Structure of a self-splicing group II intron catalytic effector domain 5: parallels with spliceosomal U6 RNA
Rna, 12, 2006
8GD7
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BU of 8gd7 by Molmil
Loop Deleted DNA Polymerase Theta Polymerase Domain in Complex with Double Strand DNA Overhang and Inhibitor
Descriptor: 2'-3'-DIDEOXYGUANOSINE-5'-TRIPHOSPHATE, 2-(3-methyl-2-oxoimidazolidin-1-yl)-4,6-bis(trifluoromethyl)phenyl (4-fluorophenyl)methylcarbamate, DNA Primer, ...
Authors:Fried, W.A, Chen, X.S, Li, S.X.
Deposit date:2023-03-03
Release date:2024-06-19
Method:X-RAY DIFFRACTION (3.24 Å)
Cite:Discovery of a small-molecule inhibitor that traps Pol theta on DNA and synergizes with PARP inhibitors.
Nat Commun, 15, 2024
7PB9
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BU of 7pb9 by Molmil
Crystal structure of tandem WH domains of Vps25 from Odinarchaeota
Descriptor: Tandem WH domains of Vps25
Authors:Salzer, R, Bellini, D, Papatziamou, D, Robinson, N.P, Lowe, J.
Deposit date:2021-08-01
Release date:2022-06-08
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Asgard archaea shed light on the evolutionary origins of the eukaryotic ubiquitin-ESCRT machinery.
Nat Commun, 13, 2022
8BXT
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BU of 8bxt by Molmil
Structure of StayGold
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, StayGold
Authors:Ivorra-Molla, E, Akhuli, D, Crow, A.
Deposit date:2022-12-09
Release date:2023-07-19
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:A monomeric StayGold fluorescent protein.
Nat.Biotechnol., 2023
1HSX
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BU of 1hsx by Molmil
LYSOZYME GROWN AT BASIC PH AND ITS LOW HUMIDITY VARIANT
Descriptor: LYSOZYME
Authors:Sukumar, N, Biswal, B.K, Vijayan, M.
Deposit date:1998-06-04
Release date:1998-08-12
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structures of orthorhombic lysozyme grown at basic pH and its low-humidity variant.
Acta Crystallogr.,Sect.D, 55, 1999
3LZT
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BU of 3lzt by Molmil
REFINEMENT OF TRICLINIC LYSOZYME AT ATOMIC RESOLUTION
Descriptor: ACETATE ION, LYSOZYME, NITRATE ION
Authors:Walsh, M.A, Schneider, T, Sieker, L.C, Dauter, Z, Lamzin, V, Wilson, K.S.
Deposit date:1997-03-23
Release date:1998-03-25
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (0.925 Å)
Cite:Refinement of triclinic hen egg-white lysozyme at atomic resolution.
Acta Crystallogr.,Sect.D, 54, 1998
5V1L
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BU of 5v1l by Molmil
Structure of S-GNA dodecamer
Descriptor: RNA (5'-R(*CP*GP*CP*GP*AP*AP*UP*(ZTH)P*AP*GP*CP*G)-3'), SPERMINE, STRONTIUM ION
Authors:Pallan, P.S, Egli, M.
Deposit date:2017-03-02
Release date:2017-06-14
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Chirality Dependent Potency Enhancement and Structural Impact of Glycol Nucleic Acid Modification on siRNA.
J. Am. Chem. Soc., 139, 2017
5V1K
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BU of 5v1k by Molmil
Structure of R-GNA dodecamer
Descriptor: RNA (5'-R(*CP*GP*CP*GP*AP*AP*(5BU)P*(8RJ)P*AP*GP*CP*G)-3')
Authors:Pallan, P.S, Egli, M.
Deposit date:2017-03-02
Release date:2017-06-21
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.18 Å)
Cite:Chirality Dependent Potency Enhancement and Structural Impact of Glycol Nucleic Acid Modification on siRNA.
J. Am. Chem. Soc., 2017
5V2H
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BU of 5v2h by Molmil
RNA octamer containing glycol nucleic acid, SgnT
Descriptor: COBALT HEXAMMINE(III), MAGNESIUM ION, RNA (5'-R(*(CBV)P*GP*AP*AP*(ZTH)P*UP*CP*G)-3')
Authors:Harp, J.M, Egli, M.
Deposit date:2017-03-04
Release date:2017-06-14
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.080013 Å)
Cite:Chirality Dependent Potency Enhancement and Structural Impact of Glycol Nucleic Acid Modification on siRNA.
J. Am. Chem. Soc., 139, 2017
5DER
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BU of 5der by Molmil
RNA oligonucleotide containing (R)-C5'-ME-2'F U
Descriptor: RNA oligonucleotide containing (R)-C5'-Me-2'-FU
Authors:Harp, J.M, Egli, M.
Deposit date:2015-08-25
Release date:2016-06-29
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural Basis of Duplex Thermodynamic Stability and Enhanced Nuclease Resistance of 5'-C-Methyl Pyrimidine-Modified Oligonucleotides.
J.Org.Chem., 81, 2016
5DEK
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BU of 5dek by Molmil
RNA octamer containing dT
Descriptor: COBALT HEXAMMINE(III), RNA oligonucleotide containing dT
Authors:Harp, J.M, Egli, M.
Deposit date:2015-08-25
Release date:2016-07-20
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.993 Å)
Cite:Structural Basis of Duplex Thermodynamic Stability and Enhanced Nuclease Resistance of 5'-C-Methyl Pyrimidine-Modified Oligonucleotides.
J.Org.Chem., 81, 2016
5D8T
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BU of 5d8t by Molmil
RNA octamer containing (S)-5' methyl, 2'-F U.
Descriptor: COBALT HEXAMMINE(III), RNA oligonucleotide containing (S)-C5'-Me-2'-FU
Authors:Harp, J.M, Egli, M.
Deposit date:2015-08-17
Release date:2016-06-29
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Structural Basis of Duplex Thermodynamic Stability and Enhanced Nuclease Resistance of 5'-C-Methyl Pyrimidine-Modified Oligonucleotides.
J.Org.Chem., 81, 2016
6AXR
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BU of 6axr by Molmil
Structure of the P122A mutant of the HIV-1 capsid protein
Descriptor: CHLORIDE ION, HIV-1 capsid protein, IODIDE ION
Authors:Gres, A.T, Kirby, K.A, Sarafianos, S.G.
Deposit date:2017-09-07
Release date:2018-09-12
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Identification of a Structural Element in HIV-1 Gag Required for Virus Particle Assembly and Maturation.
MBio, 9, 2018
6AXW
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BU of 6axw by Molmil
Structure of the I124A mutant of the HIV-1 capsid protein
Descriptor: CHLORIDE ION, HIV-1 capsid protein, IODIDE ION
Authors:Gres, A.T, Kirby, K.A, Sarafianos, S.G.
Deposit date:2017-09-07
Release date:2018-09-12
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Identification of a Structural Element in HIV-1 Gag Required for Virus Particle Assembly and Maturation.
MBio, 9, 2018
1HSW
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BU of 1hsw by Molmil
LYSOZYME (MUCOPEPTIDE N-ACETYLMURAMYL HYDROLASE)
Descriptor: LYSOZYME
Authors:Sukumar, N, Biswal, B.K, Vijayan, M.
Deposit date:1998-06-04
Release date:1998-08-12
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structures of orthorhombic lysozyme grown at basic pH and its low-humidity variant.
Acta Crystallogr.,Sect.D, 55, 1999
6V9U
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BU of 6v9u by Molmil
Crystal structure of human TLR8 ectodomain bound to small molecule antagonist 14c
Descriptor: 2-(3,4-dimethoxyphenyl)-5-(piperidin-4-yl)-3-(propan-2-yl)-1H-indole, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Critton, D.A.
Deposit date:2019-12-16
Release date:2020-08-12
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Discovery of Potent and Orally Bioavailable Small Molecule Antagonists of Toll-like Receptors 7/8/9 (TLR7/8/9).
Acs Med.Chem.Lett., 11, 2020
7RC9
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BU of 7rc9 by Molmil
Crystal structure of human TLR8 ectodomain bound to small molecule antagonist 21
Descriptor: 2-(2,6-dimethylpyridin-4-yl)-5-(piperidin-4-yl)-3-(propan-2-yl)-1H-indole, 2-acetamido-2-deoxy-beta-D-glucopyranose, Toll-like receptor 8, ...
Authors:Critton, D.A.
Deposit date:2021-07-07
Release date:2022-05-04
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.76 Å)
Cite:Identification of 2-Pyridinylindole-Based Dual Antagonists of Toll-like Receptors 7 and 8 (TLR7/8).
Acs Med.Chem.Lett., 13, 2022
2UYM
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BU of 2uym by Molmil
Crystal structure of KSP in complex with ADP and thiophene containing inhibitor 37
Descriptor: ADENOSINE-5'-DIPHOSPHATE, KINESIN-LIKE PROTEIN KIF11, MAGNESIUM ION, ...
Authors:Lee, T.T.
Deposit date:2007-04-10
Release date:2007-05-22
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Synthesis and Sar of Thiophene Containing Kinesin Spindle Protein (Ksp) Inhibitors.
Bioorg.Med.Chem.Lett., 17, 2007
2UYI
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BU of 2uyi by Molmil
Crystal structure of KSP in complex with ADP and thiophene containing inhibitor 33
Descriptor: (5R)-N,N-DIETHYL-5-METHYL-2-[(THIOPHEN-2-YLCARBONYL)AMINO]-4,5,6,7-TETRAHYDRO-1-BENZOTHIOPHENE-3-CARBOXAMIDE, ADENOSINE-5'-DIPHOSPHATE, KINESIN-LIKE PROTEIN KIF11, ...
Authors:Lee, T.T.
Deposit date:2007-04-07
Release date:2007-05-22
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Synthesis and Sar of Thiophene Containing Kinesin Spindle Protein (Ksp) Inhibitors.
Bioorg.Med.Chem.Lett., 17, 2007
3IX0
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BU of 3ix0 by Molmil
Crystal structure of human seminal plasma protein PSP94
Descriptor: Beta-microseminoprotein
Authors:Kumar, M, Kumar, A, Jagtap, D.D, Mahale, S.D.
Deposit date:2009-09-03
Release date:2010-03-16
Last modified:2014-02-05
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of prostate secretory protein PSP94 shows an edge-to-edge association of two monomers to form a homodimer
J.Mol.Biol., 397, 2010
2PG2
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BU of 2pg2 by Molmil
Crystal structure of KSP in complex with ADP and thiophene containing inhibitor 15
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Kinesin-like protein KIF11, MAGNESIUM ION, ...
Authors:Lee, T.T.
Deposit date:2007-04-06
Release date:2007-06-05
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.849 Å)
Cite:Synthesis and SAR of thiophene containing kinesin spindle protein (KSP) inhibitors
Bioorg.Med.Chem.Lett., 17, 2007
4LZT
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BU of 4lzt by Molmil
ATOMIC RESOLUTION REFINEMENT OF TRICLINIC HEW LYSOZYME AT 295K
Descriptor: LYSOZYME, NITRATE ION
Authors:Walsh, M.A, Schneider, T, Sieker, L.C, Dauter, Z, Lamzin, V, Wilson, K.S.
Deposit date:1997-03-31
Release date:1998-04-01
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (0.95 Å)
Cite:Refinement of triclinic hen egg-white lysozyme at atomic resolution.
Acta Crystallogr.,Sect.D, 54, 1998
2LPT
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BU of 2lpt by Molmil
Molecular dynamics re-refinement of domain 5 of the Pylaiella littoralis group II intron
Descriptor: RNA_(34-MER)
Authors:Henriksen, N.M, Davis, D.R, Cheatham III, T.E.
Deposit date:2012-02-17
Release date:2012-08-08
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Molecular dynamics re-refinement of two different small RNA loop structures using the original NMR data suggest a common structure.
J.Biomol.Nmr, 53, 2012
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