Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
8GDB
DownloadVisualize
BU of 8gdb by Molmil
Cryo-EM Structure of the Prostaglandin E2 Receptor 4 Coupled to G Protein
Descriptor: (Z)-7-[(1R,2R,3R)-3-hydroxy-2-[(E,3S)-3-hydroxyoct-1-enyl]-5-oxo-cyclopentyl]hept-5-enoic acid, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein G(s) subunit alpha isoforms short, ...
Authors:Shenming, H, Mengyao, X, Lei, L, Jianqiang, M, Jinpeng, S.
Deposit date:2023-03-03
Release date:2024-01-10
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Single hormone or synthetic agonist induces G s /G i coupling selectivity of EP receptors via distinct binding modes and propagating paths.
Proc.Natl.Acad.Sci.USA, 120, 2023
7BOZ
DownloadVisualize
BU of 7boz by Molmil
N-teminal of mature bacteriophage T7 tail fiber protein gp17
Descriptor: N-teminal of mature bacteriophage T7 tail fiber protein gp17
Authors:Chen, W.Y, Xiao, H.
Deposit date:2020-03-20
Release date:2021-03-17
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structural changes of a bacteriophage upon DNA packaging and maturation.
Protein Cell, 11, 2020
7BOY
DownloadVisualize
BU of 7boy by Molmil
Mature bacteriorphage t7 tail nozzle protein gp12
Descriptor: Tail tubular protein gp12
Authors:Chen, W.Y, Xiao, H.
Deposit date:2020-03-20
Release date:2021-03-17
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structural changes of a bacteriophage upon DNA packaging and maturation.
Protein Cell, 11, 2020
7BP0
DownloadVisualize
BU of 7bp0 by Molmil
Packing Bacteriophage T7 portal protein GP8
Descriptor: Portal protein
Authors:Chen, W.Y, Xiao, H.
Deposit date:2020-03-20
Release date:2021-03-17
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (4.6 Å)
Cite:Structural changes of a bacteriophage upon DNA packaging and maturation.
Protein Cell, 11, 2020
7BOX
DownloadVisualize
BU of 7box by Molmil
Mature bacteriorphage t7 tail adaptor protein gp11
Descriptor: Tail adaptor protein gp11
Authors:Chen, W.Y, Xiao, H.
Deposit date:2020-03-20
Release date:2021-03-17
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structural changes of a bacteriophage upon DNA packaging and maturation.
Protein Cell, 11, 2020
7BOU
DownloadVisualize
BU of 7bou by Molmil
GP8 of Mature Bacteriophage T7
Descriptor: Portal protein
Authors:Chen, W.Y, Xiao, H.
Deposit date:2020-03-19
Release date:2021-03-17
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structural changes of a bacteriophage upon DNA packaging and maturation.
Protein Cell, 11, 2020
7CKG
DownloadVisualize
BU of 7ckg by Molmil
Crystal structure of TMSiPheRS complexed with TMSiPhe
Descriptor: 4-(trimethylsilyl)-L-phenylalanine, Tyrosine--tRNA ligase
Authors:Sun, J.P, Wang, J.Y, Zhu, Z.L, He, Q.T, Xiao, P.
Deposit date:2020-07-17
Release date:2021-03-31
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.053 Å)
Cite:DeSiphering receptor core-induced and ligand-dependent conformational changes in arrestin via genetic encoded trimethylsilyl 1 H-NMR probe.
Nat Commun, 11, 2020
7FCV
DownloadVisualize
BU of 7fcv by Molmil
Cryo-EM structure of the Potassium channel AKT1 mutant from Arabidopsis thaliana
Descriptor: PHOSPHATIDYLETHANOLAMINE, POTASSIUM ION, Potassium channel AKT1
Authors:Yang, G.H, Lu, Y.M, Jia, Y.T, Zhang, Y.M, Tang, R.F, Xu, X, Li, X.M, Lei, J.L.
Deposit date:2021-07-15
Release date:2022-11-09
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structural basis for the activity regulation of a potassium channel AKT1 from Arabidopsis.
Nat Commun, 13, 2022
8TS6
DownloadVisualize
BU of 8ts6 by Molmil
Cyanophage A-1(L) portal
Descriptor: Portal protein
Authors:Yu, R.C, Li, Q, Zhou, C.Z.
Deposit date:2023-08-11
Release date:2024-04-10
Method:ELECTRON MICROSCOPY (3.44 Å)
Cite:Structure of the intact tail machine of Anabaena myophage A-1(L).
Nat Commun, 15, 2024
7CKH
DownloadVisualize
BU of 7ckh by Molmil
Crystal structure of TMSiPheRS
Descriptor: Tyrosine--tRNA ligase
Authors:Sun, J.P, Wang, J.Y, Zhu, Z.L, He, Q.T, Xiao, P.
Deposit date:2020-07-17
Release date:2021-03-31
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.79492676 Å)
Cite:DeSiphering receptor core-induced and ligand-dependent conformational changes in arrestin via genetic encoded trimethylsilyl 1 H-NMR probe.
Nat Commun, 11, 2020
6JM5
DownloadVisualize
BU of 6jm5 by Molmil
Crystal structure of TBC1D23 C terminal domain
Descriptor: SODIUM ION, TBC1 domain family member 23
Authors:Sun, Q, Huang, W.
Deposit date:2019-03-07
Release date:2019-10-16
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural and functional studies of TBC1D23 C-terminal domain provide a link between endosomal trafficking and PCH.
Proc.Natl.Acad.Sci.USA, 116, 2019
7WRA
DownloadVisualize
BU of 7wra by Molmil
Mouse TRPM8 in LMNG in ligand-free state
Descriptor: SODIUM ION, Transient receptor potential cation channel subfamily M member 8
Authors:Zhao, C, Xie, Y, Guo, J.
Deposit date:2022-01-26
Release date:2022-06-22
Method:ELECTRON MICROSCOPY (2.98 Å)
Cite:Structures of a mammalian TRPM8 in closed state.
Nat Commun, 13, 2022
7WRD
DownloadVisualize
BU of 7wrd by Molmil
Mouse TRPM8 in LMNG in the presence of calcium and icilin
Descriptor: CALCIUM ION, Icilin, Transient receptor potential cation channel subfamily M member 8
Authors:Zhao, C, Xie, Y, Guo, J.
Deposit date:2022-01-26
Release date:2022-06-22
Method:ELECTRON MICROSCOPY (2.98 Å)
Cite:Structures of a mammalian TRPM8 in closed state.
Nat Commun, 13, 2022
7WRF
DownloadVisualize
BU of 7wrf by Molmil
Mouse TRPM8 in lipid nanodiscs in the presence of calcium, icilin and PI(4,5)P2
Descriptor: CALCIUM ION, Icilin, SODIUM ION, ...
Authors:Zhao, C, Xie, Y, Guo, J.
Deposit date:2022-01-26
Release date:2022-06-22
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (3.04 Å)
Cite:Structures of a mammalian TRPM8 in closed state.
Nat Commun, 13, 2022
7WRC
DownloadVisualize
BU of 7wrc by Molmil
Mouse TRPM8 in LMNG in the presence of calcium, icilin and PI(4,5)P2
Descriptor: CALCIUM ION, Icilin, Transient receptor potential cation channel subfamily M member 8
Authors:Zhao, C, Xie, Y, Guo, J.
Deposit date:2022-01-26
Release date:2022-06-22
Method:ELECTRON MICROSCOPY (3.21 Å)
Cite:Structures of a mammalian TRPM8 in closed state.
Nat Commun, 13, 2022
7WRE
DownloadVisualize
BU of 7wre by Molmil
Mouse TRPM8 in lipid nanodiscs in the presence of calcium and icilin
Descriptor: CALCIUM ION, Icilin, Transient receptor potential cation channel subfamily M member 8
Authors:Zhao, C, Xie, Y, Guo, J.
Deposit date:2022-01-26
Release date:2022-06-22
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (2.52 Å)
Cite:Structures of a mammalian TRPM8 in closed state.
Nat Commun, 13, 2022
7WRB
DownloadVisualize
BU of 7wrb by Molmil
Mouse TRPM8 in LMNG in the presence of calcium
Descriptor: CALCIUM ION, Transient receptor potential cation channel subfamily M member 8
Authors:Zhao, C, Xie, Y, Guo, J.
Deposit date:2022-01-26
Release date:2022-06-22
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (2.88 Å)
Cite:Structures of a mammalian TRPM8 in closed state.
Nat Commun, 13, 2022
5ENM
DownloadVisualize
BU of 5enm by Molmil
Compound 10
Descriptor: (2~{R},4~{S},6~{S})-4-[2,4-bis(fluoranyl)-5-pyrimidin-5-yl-phenyl]-6-(3,5-dimethyl-1,2-oxazol-4-yl)-1,3-thiazinan-2-amine, Beta-secretase 1, GLYCEROL, ...
Authors:Lewis, H.A.
Deposit date:2015-11-09
Release date:2016-10-05
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Targeting the BACE1 Active Site Flap Leads to a Potent Inhibitor That Elicits Robust Brain A beta Reduction in Rodents.
Acs Med.Chem.Lett., 7, 2016
5ENK
DownloadVisualize
BU of 5enk by Molmil
Compound 18
Descriptor: (4~{S},6~{S})-4-[2,4-bis(fluoranyl)-5-pyrimidin-5-yl-phenyl]-6-(3,5-dimethyl-1,2-oxazol-4-yl)-4-methyl-5,6-dihydro-1,3-thiazin-2-amine, Beta-secretase 1, GLYCEROL, ...
Authors:Lewis, H.A.
Deposit date:2015-11-09
Release date:2016-07-06
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Targeting the BACE1 Active Site Flap Leads to a Potent Inhibitor That Elicits Robust Brain A beta Reduction in Rodents.
Acs Med.Chem.Lett., 7, 2016
8H5U
DownloadVisualize
BU of 8h5u by Molmil
Crystal structure of SARS-CoV-2 spike receptor-binding domain in complex with neutralizing nanobody Nb-021
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Nanobody Nb-021, ...
Authors:Yang, J, Lin, S, Lu, G.W.
Deposit date:2022-10-13
Release date:2023-10-18
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.401 Å)
Cite:Development of a bispecific nanobody conjugate broadly neutralizes diverse SARS-CoV-2 variants and structural basis for its broad neutralization.
Plos Pathog., 19, 2023
8H5T
DownloadVisualize
BU of 8h5t by Molmil
Crystal structure of SARS-CoV-2 spike receptor-binding domain in complex with neutralizing nanobody Nb-015
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Nanobody Nb-015, Spike protein S1
Authors:Yang, J, Lin, S, Lu, G.W.
Deposit date:2022-10-13
Release date:2023-10-18
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2 Å)
Cite:Development of a bispecific nanobody conjugate broadly neutralizes diverse SARS-CoV-2 variants and structural basis for its broad neutralization.
Plos Pathog., 19, 2023
1NDM
DownloadVisualize
BU of 1ndm by Molmil
Crystal structure of Fab fragment of antibody HyHEL-26 complexed with lysozyme
Descriptor: Lysozyme C, antibody kappa light chain, immunoglobulin gamma 1 chain
Authors:Mariuzza, R.A, Li, Y, Li, H.
Deposit date:2002-12-09
Release date:2003-06-03
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:X-ray snapshots of the maturation of an antibody response to a protein antigen
Nat.Struct.Biol., 10, 2003
8G3C
DownloadVisualize
BU of 8g3c by Molmil
Crystal structure of human WDR5 in complex with N-[(2'-cyano[1,1'-biphenyl]-4-yl)methyl]-3-hydroxy-6-methyl-4-oxo-4H-pyran-2-carboxamide (compound 1, WDR5-MYC PPI inhibitor)
Descriptor: N-[(2'-cyano[1,1'-biphenyl]-4-yl)methyl]-3-hydroxy-6-methyl-4-oxo-4H-pyran-2-carboxamide, WD repeat-containing protein 5
Authors:Zhao, M.
Deposit date:2023-02-07
Release date:2023-06-28
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Discovery and Structure-Based Design of Inhibitors of the WD Repeat-Containing Protein 5 (WDR5)-MYC Interaction.
J.Med.Chem., 66, 2023
8G3E
DownloadVisualize
BU of 8g3e by Molmil
Crystal structure of human WDR5 in complex with (1M)-N-[(3,5-difluoro[1,1'-biphenyl]-4-yl)methyl]-6-methyl-4-oxo-1-(pyridin-3-yl)-1,4-dihydropyridazine-3-carboxamide (compound 2, WDR5-MYC inhibitor)
Descriptor: (1M)-N-[(3,5-difluoro[1,1'-biphenyl]-4-yl)methyl]-6-methyl-4-oxo-1-(pyridin-3-yl)-1,4-dihydropyridazine-3-carboxamide, WD repeat-containing protein 5
Authors:Zhao, M.
Deposit date:2023-02-07
Release date:2023-06-28
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.33 Å)
Cite:Discovery and Structure-Based Design of Inhibitors of the WD Repeat-Containing Protein 5 (WDR5)-MYC Interaction.
J.Med.Chem., 66, 2023
5B7J
DownloadVisualize
BU of 5b7j by Molmil
Structure model of Sap1-DNA complex
Descriptor: DNA (5'-D(*AP*AP*TP*AP*TP*TP*GP*TP*TP*TP*TP*G)-3'), DNA (5'-D(*CP*AP*AP*AP*AP*CP*AP*AP*TP*AP*TP*T)-3'), Switch-activating protein 1
Authors:Jin, C, Hu, Y, Ding, J, Zhang, Y.
Deposit date:2016-06-07
Release date:2017-02-22
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Sap1 is a replication-initiation factor essential for the assembly of pre-replicative complex in the fission yeast Schizosaccharomyces pombe
J. Biol. Chem., 292, 2017

226707

건을2024-10-30부터공개중

PDB statisticsPDBj update infoContact PDBjnumon