Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
3O3I
DownloadVisualize
BU of 3o3i by Molmil
Crystal Structure of human Hiwi1 PAZ domain (residues 277-399) in complex with 14-mer RNA (12-bp + 2-nt overhang) containing 2'-OH at its 3'-end
分子名称: Piwi-like protein 1, RNA (5'-R(*GP*CP*GP*AP*AP*UP*AP*UP*UP*CP*GP*CP*UP*U)-3')
著者Tian, Y, Simanshu, D.K, Ma, J.-B, Patel, D.J.
登録日2010-07-24
公開日2011-01-12
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.801 Å)
主引用文献Inaugural Article: Structural basis for piRNA 2'-O-methylated 3'-end recognition by Piwi PAZ (Piwi/Argonaute/Zwille) domains.
Proc.Natl.Acad.Sci.USA, 108, 2011
3O7X
DownloadVisualize
BU of 3o7x by Molmil
Crystal structure of human Hili PAZ domain
分子名称: Piwi-like protein 2
著者Tian, Y, Simanshu, D.K, Ma, J.-B, Patel, D.J.
登録日2010-08-01
公開日2011-01-12
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.9248 Å)
主引用文献Inaugural Article: Structural basis for piRNA 2'-O-methylated 3'-end recognition by Piwi PAZ (Piwi/Argonaute/Zwille) domains.
Proc.Natl.Acad.Sci.USA, 108, 2011
6OE9
DownloadVisualize
BU of 6oe9 by Molmil
Crystal structure of p204 HIN1 domain
分子名称: GLYCEROL, Interferon-activable protein 204, SULFATE ION
著者Tian, Y, Yin, Q.
登録日2019-03-27
公開日2019-07-10
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.94 Å)
主引用文献Structural analysis of the HIN1 domain of interferon-inducible protein 204.
Acta Crystallogr.,Sect.F, 75, 2019
4OJV
DownloadVisualize
BU of 4ojv by Molmil
Crystal structure of unliganded yeast PDE1
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 3',5'-cyclic-nucleotide phosphodiesterase 1, SULFATE ION, ...
著者Tian, Y, Cui, W, Huang, M, Robinson, H, Wan, Y, Wang, Y, Ke, H.
登録日2014-01-21
公開日2014-12-03
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.31 Å)
主引用文献Dual specificity and novel structural folding of yeast phosphodiesterase-1 for hydrolysis of second messengers cyclic adenosine and guanosine 3',5'-monophosphate.
Biochemistry, 53, 2014
4OJX
DownloadVisualize
BU of 4ojx by Molmil
crystal structure of yeast phosphodiesterase-1 in complex with GMP
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 3',5'-cyclic-nucleotide phosphodiesterase 1, GUANOSINE-5'-MONOPHOSPHATE, ...
著者Tian, Y, Cui, W, Huang, M, Robinson, H, Wan, Y, Wang, Y, Ke, H.
登録日2014-01-21
公開日2014-12-03
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.31 Å)
主引用文献Dual specificity and novel structural folding of yeast phosphodiesterase-1 for hydrolysis of second messengers cyclic adenosine and guanosine 3',5'-monophosphate.
Biochemistry, 53, 2014
3O7V
DownloadVisualize
BU of 3o7v by Molmil
Crystal Structure of human Hiwi1 (V361M) PAZ domain (residues 277-399) in complex with 14-mer RNA (12-bp + 2-nt overhang) containing 2'-OCH3 at its 3'-end
分子名称: Piwi-like protein 1, RNA (5'-R(*GP*CP*GP*AP*AP*UP*AP*UP*UP*CP*GP*CP*UP*(OMU))-3')
著者Tian, Y, Simanshu, D.K, Ma, J.-B, Patel, D.J.
登録日2010-08-01
公開日2011-01-12
最終更新日2017-11-08
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Inaugural Article: Structural basis for piRNA 2'-O-methylated 3'-end recognition by Piwi PAZ (Piwi/Argonaute/Zwille) domains.
Proc.Natl.Acad.Sci.USA, 108, 2011
3O6E
DownloadVisualize
BU of 3o6e by Molmil
Crystal Structure of human Hiwi1 PAZ domain (residues 277-399) in complex with 14-mer RNA (12-bp + 2-nt overhang) containing 2'-OCH3 at its 3'-end
分子名称: Piwi-like protein 1, RNA (5'-R(*GP*CP*GP*AP*AP*UP*AP*UP*UP*CP*GP*CP*UP*(OMU))-3')
著者Tian, Y, Simanshu, D.K, Ma, J.-B, Patel, D.J.
登録日2010-07-28
公開日2011-01-12
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (2.904 Å)
主引用文献Inaugural Article: Structural basis for piRNA 2'-O-methylated 3'-end recognition by Piwi PAZ (Piwi/Argonaute/Zwille) domains.
Proc.Natl.Acad.Sci.USA, 108, 2011
3RIU
DownloadVisualize
BU of 3riu by Molmil
Crystal structure of Drosophila hexameric C3PO formed by truncated Translin and Trax
分子名称: Translin, Translin associated factor X, isoform B
著者Tian, Y, Simanshu, D.K, Patel, D.J.
登録日2011-04-14
公開日2011-05-11
最終更新日2017-11-08
実験手法X-RAY DIFFRACTION (3.4 Å)
主引用文献Multimeric assembly and biochemical characterization of the Trax-translin endonuclease complex.
Nat.Struct.Mol.Biol., 18, 2011
7SA4
DownloadVisualize
BU of 7sa4 by Molmil
Damaged 70S ribosome with PrfH bound
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Tian, Y, Zeng, F, Raybarman, A, Carruthers, A, Li, Q, Fatma, S, Huang, R.H.
登録日2021-09-22
公開日2022-08-03
実験手法ELECTRON MICROSCOPY (2.55 Å)
主引用文献Sequential rescue and repair of stalled and damaged ribosome by bacterial PrfH and RtcB.
Proc.Natl.Acad.Sci.USA, 119, 2022
4NH5
DownloadVisualize
BU of 4nh5 by Molmil
Structure of human Dicer Platform-PAZ-Connector Helix cassette in complex with 14-mer siRNA having 5'-pUU and UU-3' ends (2.55 Angstrom resolution)
分子名称: 5'-R(P*UP*UP*GP*CP*GP*AP*AP*UP*UP*CP*GP*CP*UP*U)-3', Endoribonuclease Dicer
著者Tian, Y, Simanshu, D.K, Patel, D.J.
登録日2013-11-04
公開日2014-03-05
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献A Phosphate-Binding Pocket within the Platform-PAZ-Connector Helix Cassette of Human Dicer.
Mol.Cell, 53, 2014
4NGD
DownloadVisualize
BU of 4ngd by Molmil
Structure of human Dicer Platform-PAZ-Connector Helix cassette in complex with 12-mer siRNA having 5'-p and UU-3' ends (1.95 Angstrom resolution)
分子名称: 5'-R(P*GP*CP*GP*AP*AP*UP*UP*CP*GP*CP*UP*U)-3', DI(HYDROXYETHYL)ETHER, Endoribonuclease Dicer, ...
著者Tian, Y, Simanshu, D.K, Patel, D.J.
登録日2013-11-01
公開日2014-03-05
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.958 Å)
主引用文献A Phosphate-Binding Pocket within the Platform-PAZ-Connector Helix Cassette of Human Dicer.
Mol.Cell, 53, 2014
2MOZ
DownloadVisualize
BU of 2moz by Molmil
Structure of the Membrane Protein MerF, a Bacterial Mercury Transporter, Improved by the Inclusion of Chemical Shift Anisotropy Constraints
分子名称: MerF
著者Tian, Y, Lu, G.J, Marassi, F.M, Opella, S.J, Membrane Protein Structures by Solution NMR (MPSbyNMR)
登録日2014-05-07
公開日2014-07-30
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structure of the membrane protein MerF, a bacterial mercury transporter, improved by the inclusion of chemical shift anisotropy constraints.
J.Biomol.Nmr, 60, 2014
7TWD
DownloadVisualize
BU of 7twd by Molmil
Structure of AAGAB C-terminal dimerization domain
分子名称: Alpha- and gamma-adaptin-binding protein p34, PHOSPHATE ION
著者Tian, Y, Yin, Q.
登録日2022-02-07
公開日2023-01-18
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2.11 Å)
主引用文献Oligomer-to-monomer transition underlies the chaperone function of AAGAB in AP1/AP2 assembly.
Proc.Natl.Acad.Sci.USA, 120, 2023
7ESH
DownloadVisualize
BU of 7esh by Molmil
Crystal structure of amylosucrase from Calidithermus timidus
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, amylosucrase
著者Tian, Y, Hou, X, Ni, D, Xu, W, Guang, C, Zhang, W, Rao, Y, Mu, W.
登録日2021-05-10
公開日2022-05-18
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.29 Å)
主引用文献Structure-based interface engineering methodology in designing a thermostable amylose-forming transglucosylase
J.Biol.Chem., 298, 2022
2H3H
DownloadVisualize
BU of 2h3h by Molmil
Crystal structure of the liganded form of Thermotoga maritima glucose binding protein
分子名称: Sugar ABC transporter, periplasmic sugar-binding protein, beta-D-glucopyranose
著者Changela, A, Tian, Y.
登録日2006-05-22
公開日2007-05-22
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structure-based design of robust glucose biosensors using a Thermotoga maritima periplasmic glucose-binding protein.
Protein Sci., 16, 2007
4NH3
DownloadVisualize
BU of 4nh3 by Molmil
Structure of human Dicer Platform-PAZ-Connector Helix cassette in complex with 13-mer siRNA having 5'-pU and UU-3' ends (2.6 Angstrom resolution)
分子名称: 5'-R(P*UP*GP*CP*GP*AP*AP*UP*UP*CP*GP*CP*UP*U)-3', Endoribonuclease Dicer
著者Simanshu, D.K, Tian, Y, Patel, D.J.
登録日2013-11-04
公開日2014-03-05
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.616 Å)
主引用文献A Phosphate-Binding Pocket within the Platform-PAZ-Connector Helix Cassette of Human Dicer.
Mol.Cell, 53, 2014
4NGC
DownloadVisualize
BU of 4ngc by Molmil
Structure of human Dicer Platform-PAZ-Connector Helix cassette in complex with 12-mer siRNA having UA-3' ends (2.1 Angstrom resolution)
分子名称: 5'-R(*GP*CP*GP*AP*AP*UP*UP*CP*GP*CP*UP*A)-3', Endoribonuclease Dicer
著者Simanshu, D.K, Tian, Y, Patel, D.J.
登録日2013-11-01
公開日2014-03-05
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.104 Å)
主引用文献A Phosphate-Binding Pocket within the Platform-PAZ-Connector Helix Cassette of Human Dicer.
Mol.Cell, 53, 2014
4NGG
DownloadVisualize
BU of 4ngg by Molmil
Structure of human Dicer Platform-PAZ-Connector Helix cassette in complex with 13-mer siRNA having 5'-A and UU-3' ends (2.6 Angstrom resolution)
分子名称: 5'-R(*AP*GP*CP*GP*AP*AP*UP*UP*CP*GP*CP*UP*U)-3', Endoribonuclease Dicer, PHOSPHATE ION
著者Simanshu, D.K, Tian, Y, Patel, D.J.
登録日2013-11-01
公開日2014-03-05
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献A Phosphate-Binding Pocket within the Platform-PAZ-Connector Helix Cassette of Human Dicer.
Mol.Cell, 53, 2014
4NH6
DownloadVisualize
BU of 4nh6 by Molmil
Structure of human Dicer Platform-PAZ-Connector Helix cassette in complex with 15-mer siRNA having 5'-pUUU and UU-3' ends (2.55 Angstrom resolution)
分子名称: 5'-R(P*UP*UP*UP*GP*CP*GP*AP*AP*UP*UP*CP*GP*CP*UP*U)-3', Endoribonuclease Dicer
著者Simanshu, D.K, Tian, Y, Patel, D.J.
登録日2013-11-04
公開日2014-03-05
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.551 Å)
主引用文献A Phosphate-Binding Pocket within the Platform-PAZ-Connector Helix Cassette of Human Dicer.
Mol.Cell, 53, 2014
4NGF
DownloadVisualize
BU of 4ngf by Molmil
Structure of human Dicer Platform-PAZ-Connector Helix cassette in complex with 17-mer siRNA having 5'-p and UU-3' ends (3.1 Angstrom resolution)
分子名称: 5'-R(P*UP*CP*GP*AP*AP*GP*GP*UP*CP*CP*UP*UP*CP*GP*UP*UP*U)-3', Endoribonuclease Dicer
著者Simanshu, D.K, Tian, Y, Patel, D.J.
登録日2013-11-01
公開日2014-03-05
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (3.101 Å)
主引用文献A Phosphate-Binding Pocket within the Platform-PAZ-Connector Helix Cassette of Human Dicer.
Mol.Cell, 53, 2014
4NHA
DownloadVisualize
BU of 4nha by Molmil
Structure of human Dicer Platform-PAZ-Connector Helix cassette in complex with 16-mer siRNA having 5'-p and UU-3' ends (3.4 Angstrom resolution)
分子名称: 5'-R(P*GP*CP*GP*UP*UP*GP*GP*CP*CP*AP*AP*CP*GP*CP*UP*U)-3', Endoribonuclease Dicer
著者Simanshu, D.K, Tian, Y, Ma, J.-B, Patel, D.J.
登録日2013-11-04
公開日2014-03-05
最終更新日2018-01-24
実験手法X-RAY DIFFRACTION (3.401 Å)
主引用文献A Phosphate-Binding Pocket within the Platform-PAZ-Connector Helix Cassette of Human Dicer.
Mol.Cell, 53, 2014
4NGB
DownloadVisualize
BU of 4ngb by Molmil
Structure of human Dicer Platform-PAZ-Connector Helix cassette in complex with 12-mer siRNA having UU-3' ends (2.25 Angstrom resolution)
分子名称: 5'-R(*GP*CP*GP*AP*AP*UP*UP*CP*GP*CP*UP*U)-3', Endoribonuclease Dicer
著者Simanshu, D.K, Tian, Y, Patel, D.J.
登録日2013-11-01
公開日2014-03-05
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献A Phosphate-Binding Pocket within the Platform-PAZ-Connector Helix Cassette of Human Dicer.
Mol.Cell, 53, 2014
4WQN
DownloadVisualize
BU of 4wqn by Molmil
Crystal structure of N6-methyladenosine RNA reader YTHDF2
分子名称: 1,2-ETHANEDIOL, GLYCEROL, YTH domain-containing family protein 2
著者Zhu, T, Roundtree, I.A, Wang, P, Wang, X, Wang, L, Sun, C, Tian, Y, Li, J, He, C, Xu, Y.
登録日2014-10-22
公開日2014-11-19
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.121 Å)
主引用文献Crystal structure of the YTH domain of YTHDF2 reveals mechanism for recognition of N6-methyladenosine.
Cell Res., 24, 2014
6LTH
DownloadVisualize
BU of 6lth by Molmil
Structure of human BAF Base module
分子名称: AT-rich interactive domain-containing protein 1A, SWI/SNF complex subunit SMARCC2, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1, ...
著者He, S, Wu, Z, Tian, Y, Yu, Z, Yu, J, Wang, X, Li, J, Liu, B, Xu, Y.
登録日2020-01-22
公開日2020-02-12
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Structure of nucleosome-bound human BAF complex.
Science, 367, 2020
6LTJ
DownloadVisualize
BU of 6ltj by Molmil
Structure of nucleosome-bound human BAF complex
分子名称: AT-rich interactive domain-containing protein 1A, Actin, cytoplasmic 1, ...
著者He, S, Wu, Z, Tian, Y, Yu, Z, Yu, J, Wang, X, Li, J, Liu, B, Xu, Y.
登録日2020-01-22
公開日2020-02-12
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Structure of nucleosome-bound human BAF complex.
Science, 367, 2020

226707

件を2024-10-30に公開中

PDB statisticsPDBj update infoContact PDBjnumon