4F1N
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![BU of 4f1n by Molmil](/molmil-images/mine/4f1n) | Crystal structure of Kluyveromyces polysporus Argonaute with a guide RNA | 分子名称: | KpAGO, RNA 5'-R(P*UP*AP*AP*AP*AP*AP*AP*AP*A)-3' | 著者 | Nakanishi, K, Weinberg, D.E, Bartel, D.P, Patel, D.J. | 登録日 | 2012-05-07 | 公開日 | 2012-06-13 | 最終更新日 | 2024-02-28 | 実験手法 | X-RAY DIFFRACTION (3.187 Å) | 主引用文献 | Structure of yeast Argonaute with guide RNA. Nature, 486, 2012
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3HJ7
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![BU of 3hj7 by Molmil](/molmil-images/mine/3hj7) | Crystal structure of TILS C-terminal domain | 分子名称: | CHLORIDE ION, tRNA(Ile)-lysidine synthase | 著者 | Nakanishi, K, Bonnefond, L, Kimura, S, Suzuki, T, Ishitani, R, Nureki, O. | 登録日 | 2009-05-21 | 公開日 | 2009-10-20 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | Structural basis for translational fidelity ensured by transfer RNA lysidine synthetase. Nature, 461, 2009
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4KXT
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![BU of 4kxt by Molmil](/molmil-images/mine/4kxt) | |
2CSX
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![BU of 2csx by Molmil](/molmil-images/mine/2csx) | Crystal structure of Aquifex aeolicus methionyl-tRNA synthetase complexed with tRNA(Met) | 分子名称: | Methionyl-tRNA synthetase, RNA (75-MER) | 著者 | Nakanishi, K, Ogiso, Y, Nakama, T, Fukai, S, Nureki, O, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2005-05-23 | 公開日 | 2005-09-20 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (2.7 Å) | 主引用文献 | Structural basis for anticodon recognition by methionyl-tRNA synthetase. Nat.Struct.Mol.Biol., 12, 2005
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2CT8
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![BU of 2ct8 by Molmil](/molmil-images/mine/2ct8) | Crystal structure of Aquifex aeolicus methionyl-tRNA synthetase complexed with tRNA(Met) and methionyl-adenylate anologue | 分子名称: | 5'-O-[(L-METHIONYL)-SULPHAMOYL]ADENOSINE, Methionyl-tRNA synthetase, RNA (74-MER) | 著者 | Nakanishi, K, Ogiso, Y, Nakama, T, Fukai, S, Nureki, O, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2005-05-23 | 公開日 | 2005-09-20 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (2.7 Å) | 主引用文献 | Structural basis for anticodon recognition by methionyl-tRNA synthetase. Nat.Struct.Mol.Biol., 12, 2005
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1WY5
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![BU of 1wy5 by Molmil](/molmil-images/mine/1wy5) | Crystal structure of isoluecyl-tRNA lysidine synthetase | 分子名称: | Hypothetical UPF0072 protein AQ_1887 | 著者 | Nakanishi, K, Fukai, S, Ikeuchi, Y, Soma, A, Sekine, Y, Suzuki, T, Nureki, O, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2005-02-06 | 公開日 | 2005-05-03 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (2.42 Å) | 主引用文献 | Structural basis for lysidine formation by ATP pyrophosphatase accompanied by a lysine-specific loop and a tRNA-recognition domain. Proc.Natl.Acad.Sci.Usa, 102, 2005
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3A2K
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![BU of 3a2k by Molmil](/molmil-images/mine/3a2k) | Crystal structure of TilS complexed with tRNA | 分子名称: | bacterial tRNA, tRNA(Ile)-lysidine synthase | 著者 | Nakanishi, K, Bonnefond, L, Ishitani, R, Nureki, O. | 登録日 | 2009-05-23 | 公開日 | 2009-10-20 | 最終更新日 | 2018-01-24 | 実験手法 | X-RAY DIFFRACTION (3.65 Å) | 主引用文献 | Structural basis for translational fidelity ensured by transfer RNA lysidine synthetase. Nature, 461, 2009
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3RV1
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![BU of 3rv1 by Molmil](/molmil-images/mine/3rv1) | Crystal structure of the N-terminal and RNase III domains of K. polysporus Dcr1 E224Q mutant | 分子名称: | K. polysporus Dcr1 | 著者 | Nakanishi, K, Weinberg, D.E, Bartel, D.P, Patel, D.J. | 登録日 | 2011-05-05 | 公開日 | 2011-08-03 | 最終更新日 | 2024-02-28 | 実験手法 | X-RAY DIFFRACTION (1.975 Å) | 主引用文献 | The inside-out mechanism of dicers from budding yeasts. Cell(Cambridge,Mass.), 146, 2011
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3RV0
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![BU of 3rv0 by Molmil](/molmil-images/mine/3rv0) | Crystal structure of K. polysporus Dcr1 without the C-terminal dsRBD | 分子名称: | K. polysporus Dcr1, MAGNESIUM ION | 著者 | Nakanishi, K, Weinberg, D.E, Bartel, D.P, Patel, D.J. | 登録日 | 2011-05-05 | 公開日 | 2011-08-03 | 最終更新日 | 2024-02-28 | 実験手法 | X-RAY DIFFRACTION (2.29 Å) | 主引用文献 | The inside-out mechanism of dicers from budding yeasts. Cell(Cambridge,Mass.), 146, 2011
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5VXB
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![BU of 5vxb by Molmil](/molmil-images/mine/5vxb) | |
7KPW
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![BU of 7kpw by Molmil](/molmil-images/mine/7kpw) | Structure of the H-lobe of yeast CKM | 分子名称: | Mediator of RNA polymerase II transcription subunit 12 | 著者 | Li, Y.C, Chao, T.C, Kim, H.J, Cholko, T, Chen, S.F, Nakanishi, K, Chang, C.E, Murakami, K, Garcia, B.A, Boyer, T.G, Tsai, K.L. | 登録日 | 2020-11-12 | 公開日 | 2021-01-27 | 最終更新日 | 2024-03-06 | 実験手法 | ELECTRON MICROSCOPY (4.9 Å) | 主引用文献 | Structure and noncanonical Cdk8 activation mechanism within an Argonaute-containing Mediator kinase module. Sci Adv, 7, 2021
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7KPX
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![BU of 7kpx by Molmil](/molmil-images/mine/7kpx) | Structure of the yeast CKM | 分子名称: | Mediator of RNA polymerase II transcription subunit 12, Mediator of RNA polymerase II transcription subunit 13, Meiotic mRNA stability protein kinase SSN3, ... | 著者 | Li, Y.C, Chao, T.C, Kim, H.J, Cholko, T, Chen, S.F, Nakanishi, K, Chang, C.E, Murakami, K, Garcia, B.A, Boyer, T.G, Tsai, K.L. | 登録日 | 2020-11-12 | 公開日 | 2021-01-27 | 最終更新日 | 2024-03-06 | 実験手法 | ELECTRON MICROSCOPY (4.4 Å) | 主引用文献 | Structure and noncanonical Cdk8 activation mechanism within an Argonaute-containing Mediator kinase module. Sci Adv, 7, 2021
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7KPV
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![BU of 7kpv by Molmil](/molmil-images/mine/7kpv) | Structure of kinase and Central lobes of yeast CKM | 分子名称: | Mediator of RNA polymerase II transcription subunit 12, Mediator of RNA polymerase II transcription subunit 13, Meiotic mRNA stability protein kinase SSN3, ... | 著者 | Li, Y.C, Chao, T.C, Kim, H.J, Cholko, T, Chen, S.F, Nakanishi, K, Chang, C.E, Murakami, K, Garcia, B.A, Boyer, T.G, Tsai, K.L. | 登録日 | 2020-11-12 | 公開日 | 2021-01-27 | 最終更新日 | 2024-03-06 | 実験手法 | ELECTRON MICROSCOPY (3.8 Å) | 主引用文献 | Structure and noncanonical Cdk8 activation mechanism within an Argonaute-containing Mediator kinase module. Sci Adv, 7, 2021
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6OON
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![BU of 6oon by Molmil](/molmil-images/mine/6oon) | Human Argonaute4 bound to guide RNA | 分子名称: | Protein argonaute-4, RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*UP*U)-3') | 著者 | Park, M.S, Brackbill, J.A, Nakanishi, K. | 登録日 | 2019-04-23 | 公開日 | 2019-07-31 | 最終更新日 | 2023-10-11 | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | 主引用文献 | Multidomain Convergence of Argonaute during RISC Assembly Correlates with the Formation of Internal Water Clusters. Mol.Cell, 75, 2019
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1TFO
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![BU of 1tfo by Molmil](/molmil-images/mine/1tfo) | Ribonuclease from Escherichia coli complexed with its inhibitor protein | 分子名称: | Colicin D, Colicin D immunity protein | 著者 | Yajima, S, Nakanishi, K, Takahashi, K, Ogawa, T, Kezuka, Y, Hidaka, M, Nonaka, T, Ohsawa, K, Masaki, H. | 登録日 | 2004-05-27 | 公開日 | 2005-03-01 | 最終更新日 | 2024-02-14 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | Relation between tRNase activity and the structure of colicin D according to X-ray crystallography Biochem.Biophys.Res.Commun., 322, 2004
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1TFK
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![BU of 1tfk by Molmil](/molmil-images/mine/1tfk) | Ribonuclease from Escherichia coli complexed with its inhibtor protein | 分子名称: | 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Colicin D, Colicin D immunity protein | 著者 | Yajima, S, Nakanishi, K, Takahashi, K, Ogawa, T, Kezuka, Y, Hidaka, M, Nonaka, T, Ohsawa, K, Masaki, H. | 登録日 | 2004-05-27 | 公開日 | 2005-03-01 | 最終更新日 | 2024-02-14 | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | 主引用文献 | Relation between tRNase activity and the structure of colicin D according to X-ray crystallography Biochem.Biophys.Res.Commun., 322, 2004
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5THE
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![BU of 5the by Molmil](/molmil-images/mine/5the) | |
5VM9
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![BU of 5vm9 by Molmil](/molmil-images/mine/5vm9) | Human Argonaute3 bound to guide RNA | 分子名称: | Protein argonaute-3, RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*UP*U)-3'), RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*UP*U)-3') | 著者 | Park, M.S, Nakanishi, K. | 登録日 | 2017-04-26 | 公開日 | 2017-10-18 | 最終更新日 | 2023-10-04 | 実験手法 | X-RAY DIFFRACTION (3.28 Å) | 主引用文献 | Human Argonaute3 has slicer activity. Nucleic Acids Res., 45, 2017
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3W4J
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![BU of 3w4j by Molmil](/molmil-images/mine/3w4j) | Crystal Structure of human DAAO in complex with coumpound 12 | 分子名称: | 3-hydroxy-5-(2-phenylethyl)pyridin-2(1H)-one, D-amino-acid oxidase, FLAVIN-ADENINE DINUCLEOTIDE | 著者 | Hondo, T, Warizaya, M, Niimi, T, Namatame, I, Yamaguchi, T, Nakanishi, K, Hamajima, T, Harada, K, Sakashita, H, Matsumoto, Y, Orita, M, Watanabe, T, Takeuchi, M. | 登録日 | 2013-01-09 | 公開日 | 2013-05-29 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (2.74 Å) | 主引用文献 | 4-Hydroxypyridazin-3(2H)-one Derivatives as Novel d-Amino Acid Oxidase Inhibitors. J.Med.Chem., 56, 2013
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3W4I
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![BU of 3w4i by Molmil](/molmil-images/mine/3w4i) | Crystal Structure of human DAAO in complex with coumpound 8 | 分子名称: | D-amino-acid oxidase, FLAVIN-ADENINE DINUCLEOTIDE, pyridine-2,3-diol | 著者 | Hondo, T, Warizaya, M, Niimi, T, Namatame, I, Yamaguchi, T, Nakanishi, K, Hamajima, T, Harada, K, Sakashita, H, Matsumoto, Y, Orita, M, Watanabe, T, Takeuchi, M. | 登録日 | 2013-01-09 | 公開日 | 2013-05-29 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | 主引用文献 | 4-Hydroxypyridazin-3(2H)-one Derivatives as Novel d-Amino Acid Oxidase Inhibitors. J.Med.Chem., 56, 2013
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3W4K
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![BU of 3w4k by Molmil](/molmil-images/mine/3w4k) | Crystal Structure of human DAAO in complex with coumpound 13 | 分子名称: | 3-hydroxy-6-(2-phenylethyl)pyridazin-4(1H)-one, D-amino-acid oxidase, FLAVIN-ADENINE DINUCLEOTIDE | 著者 | Hondo, T, Warizaya, M, Niimi, T, Namatame, I, Yamaguchi, T, Nakanishi, K, Hamajima, T, Harada, K, Sakashita, H, Matsumoto, Y, Orita, M, Watanabe, T, Takeuchi, M. | 登録日 | 2013-01-09 | 公開日 | 2013-05-29 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (2.86 Å) | 主引用文献 | 4-Hydroxypyridazin-3(2H)-one Derivatives as Novel d-Amino Acid Oxidase Inhibitors. J.Med.Chem., 56, 2013
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1G0D
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![BU of 1g0d by Molmil](/molmil-images/mine/1g0d) | CRYSTAL STRUCTURE OF RED SEA BREAM TRANSGLUTAMINASE | 分子名称: | PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE, SULFATE ION | 著者 | Noguchi, K, Ishikawa, K, Yokoyama, K, Ohtsuka, T, Nio, N, Suzuki, E. | 登録日 | 2000-10-06 | 公開日 | 2001-05-23 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | 主引用文献 | Crystal structure of red sea bream transglutaminase. J.Biol.Chem., 276, 2001
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8SP3
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![BU of 8sp3 by Molmil](/molmil-images/mine/8sp3) | Asymmetric dimer of MapSPARTA bound with gRNA/tDNA hybrid | 分子名称: | MAGNESIUM ION, TIR-APAZ, guide RNA, ... | 著者 | Shen, Z.F, Yang, X.Y, Fu, T.M. | 登録日 | 2023-05-01 | 公開日 | 2023-08-23 | 最終更新日 | 2023-09-20 | 実験手法 | ELECTRON MICROSCOPY (3.52 Å) | 主引用文献 | Oligomerization-mediated activation of a short prokaryotic Argonaute. Nature, 621, 2023
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8SPO
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![BU of 8spo by Molmil](/molmil-images/mine/8spo) | Tetramerized activation of MapSPARTA bound with NAD+ | 分子名称: | MAGNESIUM ION, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Piwi domain-containing protein, ... | 著者 | Shen, Z.F, Yang, X.Y, Fu, T.M. | 登録日 | 2023-05-03 | 公開日 | 2023-08-23 | 最終更新日 | 2023-09-20 | 実験手法 | ELECTRON MICROSCOPY (2.98 Å) | 主引用文献 | Oligomerization-mediated activation of a short prokaryotic Argonaute. Nature, 621, 2023
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8SP0
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![BU of 8sp0 by Molmil](/molmil-images/mine/8sp0) | Symmetric dimer of MapSPARTA bound with gRNA/tDNA hybrid | 分子名称: | MAGNESIUM ION, TIR-APAZ, guide RNA, ... | 著者 | Shen, Z.F, Yang, X.Y, Fu, T.M. | 登録日 | 2023-05-01 | 公開日 | 2023-08-23 | 最終更新日 | 2023-09-20 | 実験手法 | ELECTRON MICROSCOPY (3.33 Å) | 主引用文献 | Oligomerization-mediated activation of a short prokaryotic Argonaute. Nature, 621, 2023
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