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1AFX
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UGAA EUKARYOTIC RIBOSOMAL RNA TETRALOOP, NMR, 13 STRUCTURES
分子名称: RNA (5'-R(*GP*GP*UP*GP*UP*GP*AP*AP*CP*AP*CP*C)-3')
著者Butcher, S.E, Dieckmann, T, Feigon, J.
登録日1997-03-15
公開日1997-05-15
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Solution structure of the loop B domain from the hairpin ribozyme.
Nat.Struct.Biol., 6, 1999
1B36
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BU of 1b36 by Molmil
SOLUTION STRUCTURE OF THE HAIRPIN RIBOZYME LOOP B DOMAIN RNA, NMR, 10 STRUCTURES
分子名称: RNA (RNA LOOP B)
著者Butcher, S.E, Dieckmann, T, Feigon, J.
登録日1998-12-17
公開日1998-12-23
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Solution structure of the loop B domain from the hairpin ribozyme.
Nat.Struct.Biol., 6, 1999
1TLR
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BU of 1tlr by Molmil
SOLUTION STRUCTURE OF TETRALOOP RECEPTOR RNA, NMR, 20 STRUCTURES
分子名称: RNA TETRALOOP RECEPTOR (5'-R(GGCCUAAGACUUCGGUUAUGGCC)-3')
著者Butcher, S.E, Dieckmann, T, Feigon, J.
登録日1997-09-11
公開日1997-11-12
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Solution structure of a GAAA tetraloop receptor RNA.
EMBO J., 16, 1997
4N0T
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BU of 4n0t by Molmil
Core structure of the U6 small nuclear ribonucleoprotein at 1.7 Angstrom resolution
分子名称: SULFATE ION, U4/U6 snRNA-associated-splicing factor PRP24, U6 snRNA
著者Montemayor, E.J, Curran, E.C, Liao, H, Andrews, K.L, Treba, C.N, Butcher, S.E, Brow, D.A.
登録日2013-10-02
公開日2014-05-14
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Core structure of the U6 small nuclear ribonucleoprotein at 1.7- angstrom resolution.
Nat.Struct.Mol.Biol., 21, 2014
8TNS
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BU of 8tns by Molmil
Solution structure of poly(UG) RNA (GU)12 G-quadruplex
分子名称: RNA (5'-R(*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*U)-3')
著者Escobar, C.A, Petersen, R, Butcher, S.E.
登録日2023-08-02
公開日2023-11-15
最終更新日2024-05-15
実験手法SOLUTION NMR, SOLUTION SCATTERING
主引用文献Solution Structure of Poly(UG) RNA.
J.Mol.Biol., 435, 2023
6E7L
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BU of 6e7l by Molmil
Structure of a dimerized UUCG motif
分子名称: RNA (5'-R(*GP*GP*GP*CP*UP*GP*CP*AP*CP*UP*UP*CP*GP*GP*UP*GP*CP*UP*GP*CP*CP*C)-3')
著者Montemayor, E.J, Butcher, S.E.
登録日2018-07-26
公開日2019-07-31
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.59 Å)
主引用文献Structure of an RNA helix with pyrimidine mismatches and cross-strand stacking.
Acta Crystallogr.,Sect.F, 75, 2019
5V1M
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BU of 5v1m by Molmil
Structure of human Usb1 with uridine 5'-monophosphate
分子名称: CHLORIDE ION, GLYCEROL, U6 snRNA phosphodiesterase, ...
著者Montemayor, E.J, Didychuk, A.L, Butcher, S.E.
登録日2017-03-02
公開日2017-08-16
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.47 Å)
主引用文献Usb1 controls U6 snRNP assembly through evolutionarily divergent cyclic phosphodiesterase activities.
Nat Commun, 8, 2017
5UQJ
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BU of 5uqj by Molmil
Structure of yeast Usb1
分子名称: ACETATE ION, GLYCEROL, SULFATE ION, ...
著者Didychuk, A.L, Montemayor, E.J, Butcher, S.E.
登録日2017-02-08
公開日2017-08-16
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Usb1 controls U6 snRNP assembly through evolutionarily divergent cyclic phosphodiesterase activities.
Nat Commun, 8, 2017
7MKT
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BU of 7mkt by Molmil
Crystal structure of r(GU)11G-NMM complex
分子名称: N-METHYLMESOPORPHYRIN, POTASSIUM ION, RNA (5'-R(*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*G)-3')
著者Bingman, C.A, Roschdi, S, Nomura, Y, Butcher, S.E.
登録日2021-04-26
公開日2022-11-02
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (1.97 Å)
主引用文献An atypical RNA quadruplex marks RNAs as vectors for gene silencing.
Nat.Struct.Mol.Biol., 29, 2022
1XHP
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BU of 1xhp by Molmil
Solution Structure of the Extended U6 ISL as Observed in the U2/U6 complex from Saccharomyces cerevisiae
分子名称: U6 snRNA
著者Sashital, D.G, Cornilescu, G, Butcher, S.E.
登録日2004-09-20
公開日2004-11-23
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献U2-U6 RNA folding reveals a group II intron-like domain and a four-helix junction
Nat.Struct.Mol.Biol., 11, 2004
1Z2J
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BU of 1z2j by Molmil
Solution structure of the HIV-1 frameshift inducing element
分子名称: HIV-1 frameshift site RNA
著者Staple, D.W, Butcher, S.E.
登録日2005-03-08
公開日2005-06-14
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Solution Structure and Thermodynamic Investigation of the HIV-1 Frameshift Inducing Element.
J.Mol.Biol., 349, 2005
2ADT
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BU of 2adt by Molmil
NMR structure of a 30 kDa GAAA tetraloop-receptor complex.
分子名称: 43-MER
著者Davis, J.H, Tonelli, M, Scott, L.G, Jaeger, L, Williamson, J.R, Butcher, S.E.
登録日2005-07-20
公開日2005-07-26
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献RNA Helical Packing in Solution: NMR Structure of a 30 kDa GAAA Tetraloop-Receptor Complex
J.Mol.Biol., 351, 2005
5TF6
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BU of 5tf6 by Molmil
Structure and conformational plasticity of the U6 small nuclear ribonucleoprotein core
分子名称: CHLORIDE ION, GLYCEROL, POTASSIUM ION, ...
著者Montemayor, E.J, Brow, D.A, Butcher, S.E.
登録日2016-09-24
公開日2017-01-11
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structure and conformational plasticity of the U6 small nuclear ribonucleoprotein core.
Acta Crystallogr D Struct Biol, 73, 2017
2L94
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BU of 2l94 by Molmil
Structure of the HIV-1 frameshift site RNA bound to a small molecule inhibitor of viral replication
分子名称: N'-{(Z)-amino[4-(amino{[3-(dimethylammonio)propyl]iminio}methyl)phenyl]methylidene}-N,N-dimethylpropane-1,3-diaminium, RNA_(45-MER)
著者Marcheschi, R.J, Tonelli, M, Kumar, A, Butcher, S.E.
登録日2011-01-29
公開日2011-06-15
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structure of the HIV-1 Frameshift Site RNA Bound to a Small Molecule Inhibitor of Viral Replication.
Acs Chem.Biol., 6, 2011
2N7M
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BU of 2n7m by Molmil
NMR-SAXS/WAXS Structure of the core of the U4/U6 di-snRNA
分子名称: RNA (92-MER)
著者Cornilescu, G, Didychuk, A.L, Rodgers, M.L, Michael, L.A, Burke, J.E, Montemayor, E.J, Hoskins, A.A, Butcher, S.E, Tonelli, M.
登録日2015-09-14
公開日2015-12-30
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structural Analysis of Multi-Helical RNAs by NMR-SAXS/WAXS: Application to the U4/U6 di-snRNA.
J.Mol.Biol., 428, 2016
2O32
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BU of 2o32 by Molmil
Solution structure of U2 snRNA stem I from human, containing modified nucleotides
分子名称: 5'-R(*(PSU)P*CP*UP*CP*(OMG)P*(OMG)P*CP*CP*(PSU)P*UP*UP*UP*(OMG)P*GP*CP*UP*AP*AP*(OMG)P*A)-3'
著者Sashital, D.G, Venditti, V, Angers, C.G, Cornilescu, G, Butcher, S.E.
登録日2006-11-30
公開日2007-02-06
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Structure and thermodynamics of a conserved U2 snRNA domain from yeast and human.
Rna, 13, 2007
2O33
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Solution structure of U2 snRNA stem I from S. cerevisiae
分子名称: U2 snRNA
著者Sashital, D.G, Venditti, V, Angers, C.A, Cornilescu, G, Butcher, S.E.
登録日2006-11-30
公開日2007-02-06
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Structure and thermodynamics of a conserved U2 snRNA domain from yeast and human.
Rna, 13, 2007
2N8V
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BU of 2n8v by Molmil
An NMR/SAXS structure of the PKI domain of the honeybee dicistrovirus, Israeli acute paralysis virus (IAPV) IRES
分子名称: RNA (70-MER)
著者Au, H.H, Cornilescu, G, Mouzakis, K.D, Burke, J.E, Ren, Q, Lee, S, Butcher, S.E, Jan, E.
登録日2015-10-27
公開日2015-11-11
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Global shape mimicry of tRNA within a viral internal ribosome entry site mediates translational reading frame selection.
Proc.Natl.Acad.Sci.USA, 112, 2015
2KEZ
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BU of 2kez by Molmil
NMR structure of U6 ISL at pH 8.0
分子名称: RNA (5'-R(*GP*GP*UP*UP*CP*CP*CP*CP*UP*GP*CP*AP*UP*AP*AP*GP*GP*AP*UP*GP*AP*AP*CP*C)-3')
著者Venditti, V, Butcher, S.E.
登録日2009-02-08
公開日2009-07-21
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Minimum-energy path for a u6 RNA conformational change involving protonation, base-pair rearrangement and base flipping.
J.Mol.Biol., 391, 2009
2KF0
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BU of 2kf0 by Molmil
NMR structure of U6 ISL at pH 7.0
分子名称: RNA (5'-R(*GP*GP*UP*UP*CP*CP*CP*CP*UP*GP*CP*AP*UP*AP*AP*GP*GP*AP*UP*GP*AP*AP*CP*C)-3')
著者Venditti, V, Butcher, S.E.
登録日2009-02-08
公開日2009-07-21
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Minimum-energy path for a u6 RNA conformational change involving protonation, base-pair rearrangement and base flipping.
J.Mol.Biol., 391, 2009
1SYZ
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BU of 1syz by Molmil
Solution structure of the S. Cerevisiae U6 intramolecular stem loop (ISL) RNA at pH 5.7
分子名称: U6 INTRAMOLECULAR STEM-LOOP RNA
著者Reiter, N.J, Blad, H, Abildgaard, F, Butcher, S.E.
登録日2004-04-02
公開日2004-11-09
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Dynamics in the U6 RNA Intramolecular Stem-Loop: A Base Flipping Conformational Change.
Biochemistry, 43, 2004
1SY4
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Refined solution structure of the S. cerevisiae U6 INTRAMOLECULAR STEM LOOP (ISL) RNA USING RESIDUAL DIPOLAR COUPLINGS (RDCS)
分子名称: U6 Intramolecular Stem-Loop RNA
著者Reiter, N.J, Nikstad, L.J, Allman, A.M, Johnson, R.J, Butcher, S.E.
登録日2004-03-31
公開日2004-04-06
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Structure of the U6 RNA intramolecular stem-loop harboring an S(P)-phosphorothioate modification.
RNA, 9, 2003
1PJY
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Solution structure of the HIV-1 frameshift inducing stem-loop RNA
分子名称: HIV-1 frameshift inducing stem-loop
著者Staple, D.W, Butcher, S.E.
登録日2003-06-04
公開日2003-08-05
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Solution structure of the HIV-1 frameshift inducing stem-loop RNA.
Nucleic Acids Res., 31, 2003
1NC0
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U80G U6 Intramolecular Stem-Loop RNA from Saccharomyces cerevisiae
分子名称: U80G U6 RNA Intramolecular Stem-Loop
著者Sashital, D.G, Allmann, A.M, Van Doren, S, Butcher, S.E.
登録日2002-12-04
公開日2003-02-25
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Structural Basis for a Lethal Mutation in U6 RNA
Biochemistry, 42, 2003
1NZ1
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Solution structure of the S. cerevisiae U6 Intramolecular stem-loop containing an SP phosphorothioate at nucleotide U80
分子名称: SP U6 Intramolecular Stem-Loop RNA
著者Reiter, N.J, Nikstad, L.J, Allman, A.M, Johnson, R.J, Butcher, S.E.
登録日2003-02-14
公開日2003-05-13
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Structure of the U6 RNA intramolecular stem-loop harboring an S(P)-phosphorothioate modification.
RNA, 9, 2003

 

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