Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
6Q60
DownloadVisualize
BU of 6q60 by Molmil
Structure of GluA2 ligand-binding domain (S1S2J) in complex with the agonist (S)-2-Amino-3-(2-methyl-5-hydroxy-2H-1,2,3-triazol-4-yl)propanoic acid at 1.55 A resolution
分子名称: (2~{S})-2-azanyl-3-(2-methyl-5-oxidanyl-1,2,3-triazol-4-yl)propanoic acid, CHLORIDE ION, GLYCEROL, ...
著者Moellerud, S, Temperini, P, Kastrup, J.S.
登録日2018-12-10
公開日2019-04-17
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Use of the 4-Hydroxytriazole Moiety as a Bioisosteric Tool in the Development of Ionotropic Glutamate Receptor Ligands.
J.Med.Chem., 62, 2019
4FB3
DownloadVisualize
BU of 4fb3 by Molmil
Polyomavirus T-ag binds symmetrical repeats at the viral origin in an asymmetrical manner
分子名称: Large T antigen, ORI DNA oligonucleotide-Crick strand, ORI DNA oligonucleotide-Watson strand
著者Bohm, A, Harrison, C.J, Schaffhausen, B.S, Jiang, T.
登録日2012-05-22
公開日2013-10-23
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (3.79 Å)
主引用文献Polyomavirus large T antigen binds symmetrical repeats at the viral origin in an asymmetrical manner.
J.Virol., 87, 2013
2FSU
DownloadVisualize
BU of 2fsu by Molmil
Crystal Structure of the PhnH Protein from Escherichia Coli
分子名称: ACETATE ION, Protein phnH, SODIUM ION
著者Adams, M.A, Luo, Y, Zechel, D.L, Jia, Z, Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)
登録日2006-01-23
公開日2007-03-27
最終更新日2019-07-24
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structure of PhnH: an essential component of carbon-phosphorus lyase in Escherichia coli.
J.Bacteriol., 190, 2008
3GO0
DownloadVisualize
BU of 3go0 by Molmil
Crystal structure of D-enantiomer of human alpha-defensin 1 (D-HNP1)
分子名称: CHLORIDE ION, Neutrophil defensin 1
著者Pazgier, M, Lu, W.-Y.
登録日2009-03-18
公開日2009-07-28
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.56 Å)
主引用文献Through the looking glass, mechanistic insights from enantiomeric human defensins.
J.Biol.Chem., 284, 2009
3HJ2
DownloadVisualize
BU of 3hj2 by Molmil
Crystal structure of covalent dimer of HNP1
分子名称: HUMAN NEUTROPHIL PEPTIDE 1
著者Lubkowski, J, Pazgier, M, Lu, W.
登録日2009-05-20
公開日2009-10-20
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献What Dictates the Multifaced Functions of the Human alpha-Defensin HNP1?
To be Published
3HJD
DownloadVisualize
BU of 3hjd by Molmil
X-ray structure of monomeric variant of HNP1
分子名称: Human neutrophil peptide 1
著者Lubkowski, J, Pazgier, M, Lu, W.
登録日2009-05-21
公開日2009-10-13
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献What Dictates the Multifaced Functions of the Human alpha-Defensin HNP?
To be Published
4TWB
DownloadVisualize
BU of 4twb by Molmil
Sulfolobus solfataricus ribose-phosphate pyrophosphokinase
分子名称: ADENOSINE MONOPHOSPHATE, Ribose-phosphate pyrophosphokinase, SULFATE ION
著者Kadziola, A.
登録日2014-06-30
公開日2014-07-30
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.802 Å)
主引用文献Structure of dimeric, recombinant Sulfolobus solfataricus phosphoribosyl diphosphate synthase: a bent dimer defining the adenine specificity of the substrate ATP.
Extremophiles, 19, 2015
4XB6
DownloadVisualize
BU of 4xb6 by Molmil
Structure of the E. coli C-P lyase core complex
分子名称: Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase, Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnG, Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnH, ...
著者Brodersen, D.E.
登録日2014-12-16
公開日2015-08-19
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structural insights into the bacterial carbon-phosphorus lyase machinery.
Nature, 525, 2015
5FHM
DownloadVisualize
BU of 5fhm by Molmil
Crystal structure of the GluA2 ligand-binding domain (S1S2J) in complex with (S)-2-Amino-3-(5-(2-(3-(aminomethyl)benzyl)-2H-tetrazol-5-yl)-3-hydroxyisoxazol-4-yl)propanoic acid at resolution 1.55 A resolution
分子名称: (2~{S})-3-[5-[2-[[3-(aminomethyl)phenyl]methyl]-1,2,3,4-tetrazol-5-yl]-3-oxidanyl-1,2-oxazol-4-yl]-2-azanyl-propanoic acid, 1,2-ETHANEDIOL, ACETATE ION, ...
著者Kastrup, J.S, Frydenvang, K, Al-musaed, A.
登録日2015-12-22
公開日2016-03-02
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Tweaking Subtype Selectivity and Agonist Efficacy at (S)-2-Amino-3-(3-hydroxy-5-methyl-isoxazol-4-yl)propionic acid (AMPA) Receptors in a Small Series of BnTetAMPA Analogues.
J.Med.Chem., 59, 2016
5FHO
DownloadVisualize
BU of 5fho by Molmil
Crystal structure of the GluA2 ligand-binding domain (S1S2J) in complex with (S)-2-Amino-3-(5-(2-(3-chlorobenzyl)-2H-tetrazol-5-yl)-3-hydroxyisoxazol-4-yl)propanoic acid at 2.3 A resolution
分子名称: (1S)-1-carboxy-2-(5-{2-[(3-chlorophenyl)methyl]-2H-tetrazol-5-yl}-3-oxo-2,3-dihydro-1,2-oxazol-4-yl)ethan-1-aminium, 1,2-ETHANEDIOL, CHLORIDE ION, ...
著者Frydenvang, K, Kastrup, J.S.
登録日2015-12-22
公開日2016-03-02
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Tweaking Subtype Selectivity and Agonist Efficacy at (S)-2-Amino-3-(3-hydroxy-5-methyl-isoxazol-4-yl)propionic acid (AMPA) Receptors in a Small Series of BnTetAMPA Analogues.
J.Med.Chem., 59, 2016
5FHN
DownloadVisualize
BU of 5fhn by Molmil
Crystal structure of the GluA2 ligand-binding domain (S1S2J) in complex with (S)-2-Amino-3-(5-(2-(3-methylbenzyl)-2H-tetrazol-5-yl)-3-hydroxyisoxazol-4-yl)propanoic acid at 1.6 A resolution
分子名称: (S)-2-Amino-3-(5-(2-(3-methylbenzyl)-2H-tetrazol-5-yl)-3-hydroxyisoxazol-4-yl)propanoic acid, 1,2-ETHANEDIOL, ACETATE ION, ...
著者Frydenvang, K, Kastrup, J.S.
登録日2015-12-22
公開日2016-03-02
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Tweaking Subtype Selectivity and Agonist Efficacy at (S)-2-Amino-3-(3-hydroxy-5-methyl-isoxazol-4-yl)propionic acid (AMPA) Receptors in a Small Series of BnTetAMPA Analogues.
J.Med.Chem., 59, 2016
3EOV
DownloadVisualize
BU of 3eov by Molmil
Crystal structure of cyclophilin from Leishmania donovani ligated with cyclosporin A
分子名称: CYCLOSPORIN A, PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
著者Venugopal, V, Dasgupta, D, Datta, A.K, Banerjee, R.
登録日2008-09-29
公開日2008-11-11
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structure of Cyclophilin from Leishmania Donovani Bound to Cyclosporin at 2.6 A Resolution: Correlation between Structure and Thermodynamic Data.
Acta Crystallogr.,Sect.D, 65, 2009
6WEB
DownloadVisualize
BU of 6web by Molmil
Multi-Hit SFX using MHz XFEL sources
分子名称: 1,2-ETHANEDIOL, ACETATE ION, CHLORIDE ION, ...
著者Holmes, S, Darmanin, C, Abbey, B.
登録日2020-04-01
公開日2021-10-13
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Megahertz pulse trains enable multi-hit serial femtosecond crystallography experiments at X-ray free electron lasers.
Nat Commun, 13, 2022
6WEC
DownloadVisualize
BU of 6wec by Molmil
Multi-Hit SFX using MHz XFEL sources
分子名称: 1,2-ETHANEDIOL, ACETATE ION, CHLORIDE ION, ...
著者Holmes, S, Darmanin, C, Abbey, B.
登録日2020-04-01
公開日2021-10-13
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Megahertz pulse trains enable multi-hit serial femtosecond crystallography experiments at X-ray free electron lasers.
Nat Commun, 13, 2022
4YMB
DownloadVisualize
BU of 4ymb by Molmil
Structure of the ligand-binding domain of GluK1 in complex with the antagonist CNG10111
分子名称: (3R,4S)-3-(3-carboxyphenyl)-4-propyl-L-proline, 1,2-ETHANEDIOL, ACETATE ION, ...
著者Moller, C, Tapken, D, Kastrup, J.S, Frydenvang, K.
登録日2015-03-06
公開日2015-08-05
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.93 Å)
主引用文献Structure-Activity Relationship Study of Ionotropic Glutamate Receptor Antagonist (2S,3R)-3-(3-Carboxyphenyl)pyrrolidine-2-carboxylic Acid.
J.Med.Chem., 58, 2015
8BLA
DownloadVisualize
BU of 8bla by Molmil
Human serotonin 5-HT3A receptor in complex with vortioxetine (detergent, ECD only, active/distorted conformation)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 5-hydroxytryptamine receptor 3A, ...
著者Lopez-Sanchez, U, Nury, H.
登録日2022-11-09
公開日2024-05-15
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Structural determinants for activity of the antidepressant vortioxetine at human and rodent 5-HT 3 receptors.
Nat.Struct.Mol.Biol., 2024
8BLB
DownloadVisualize
BU of 8blb by Molmil
Human serotonin 5-HT3A receptor in complex with vortioxetine (nanodiscs, ECD, active/distorted conformation)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 5-hydroxytryptamine receptor 3A, ...
著者Lopez-Sanchez, U, Nury, H.
登録日2022-11-09
公開日2024-05-15
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Structural determinants for activity of the antidepressant vortioxetine at human and rodent 5-HT 3 receptors.
Nat.Struct.Mol.Biol., 2024
8BL8
DownloadVisualize
BU of 8bl8 by Molmil
Human serotonin 5-HT3A receptor (apo, active/distorted conformation)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 5-hydroxytryptamine receptor 3A
著者Lopez-Sanchez, U, Nury, H.
登録日2022-11-09
公開日2024-05-15
実験手法ELECTRON MICROSCOPY (3.21 Å)
主引用文献Structural determinants for activity of the antidepressant vortioxetine at human and rodent 5-HT 3 receptors.
Nat.Struct.Mol.Biol., 2024
8VCW
DownloadVisualize
BU of 8vcw by Molmil
X-Ray Crystal Structure of the biotin synthase from B. obeum
分子名称: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 6-(5-METHYL-2-OXO-IMIDAZOLIDIN-4-YL)-HEXANOIC ACID, Biotin synthase, ...
著者Lachowicz, J.C, Grove, T.L.
登録日2023-12-14
公開日2024-01-24
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Discovery of a Biotin Synthase That Utilizes an Auxiliary 4Fe-5S Cluster for Sulfur Insertion.
J.Am.Chem.Soc., 146, 2024
8FTS
DownloadVisualize
BU of 8fts by Molmil
SgvM methyltransferase with SAH and alpha-ketoleucine
分子名称: 2-OXO-4-METHYLPENTANOIC ACID, Methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE, ...
著者Kuzelka, K, Nair, S.K.
登録日2023-01-13
公開日2023-11-01
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献A biocatalytic platform for asymmetric alkylation of alpha-keto acids by mining and engineering of methyltransferases
Nat Commun, 14, 2023
8FTV
DownloadVisualize
BU of 8ftv by Molmil
SgvM methyltransferase triple variant (M144V/F329V/T331A) with SAH and 2-oxo-4-phenylbutanoic acid
分子名称: 2-oxo-4-phenylbutanoic acid, Methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE, ...
著者Kuzelka, K, Nair, S.K.
登録日2023-01-13
公開日2023-11-01
実験手法X-RAY DIFFRACTION (2.04 Å)
主引用文献A biocatalytic platform for asymmetric alkylation of alpha-keto acids by mining and engineering of methyltransferases
Nat Commun, 14, 2023
8FTR
DownloadVisualize
BU of 8ftr by Molmil
SgvM methyltransferase with MTA and alpha-ketoleucine
分子名称: 2-OXO-4-METHYLPENTANOIC ACID, 5'-DEOXY-5'-METHYLTHIOADENOSINE, Methyltransferase, ...
著者Kuzelka, K, Nair, S.K.
登録日2023-01-13
公開日2023-11-01
実験手法X-RAY DIFFRACTION (2.13 Å)
主引用文献A biocatalytic platform for asymmetric alkylation of alpha-keto acids by mining and engineering of methyltransferases.
Nat Commun, 14, 2023
8VDW
DownloadVisualize
BU of 8vdw by Molmil
X-Ray Crystal Structure of the biotin synthase from V. parvula
分子名称: 6-(5-METHYL-2-OXO-IMIDAZOLIDIN-4-YL)-HEXANOIC ACID, Biotin synthase, Fe4 H S5, ...
著者Lachowicz, J.C, Grove, T.L.
登録日2023-12-18
公開日2024-01-24
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.807 Å)
主引用文献Discovery of a Biotin Synthase That Utilizes an Auxiliary 4Fe-5S Cluster for Sulfur Insertion.
J.Am.Chem.Soc., 146, 2024
8AW2
DownloadVisualize
BU of 8aw2 by Molmil
Mouse serotonin 5-HT3A receptor in complex with vortioxetine
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 5-hydroxytryptamine receptor 3A, ...
著者Lopez-Sanchez, U, Nury, H.
登録日2022-08-29
公開日2024-03-06
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (3.01 Å)
主引用文献Structural determinants for activity of the antidepressant vortioxetine at human and rodent 5-HT 3 receptors.
Nat.Struct.Mol.Biol., 2024
8AXD
DownloadVisualize
BU of 8axd by Molmil
Human serotonin 5-HT3A receptor (apo, resting conformation)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 5-hydroxytryptamine receptor 3A
著者Lopez-Sanchez, U, Nury, H.
登録日2022-08-31
公開日2024-03-06
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (2.98 Å)
主引用文献Structural determinants for activity of the antidepressant vortioxetine at human and rodent 5-HT 3 receptors.
Nat.Struct.Mol.Biol., 2024

222415

件を2024-07-10に公開中

PDB statisticsPDBj update infoContact PDBjnumon