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3SW6
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BU of 3sw6 by Molmil
Crystal structure of Methanothermobacter thermautotrophicus orotidine 5'-monophosphate decarboxylase covalently modified by 5-fluoro-6-azido-UMP
分子名称: 5-FLUORO-URIDINE-5'-MONOPHOSPHATE, Orotidine 5'-phosphate decarboxylase
著者Liu, Y, Kotra, L.P, Pai, E.F.
登録日2011-07-13
公開日2012-05-02
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Crystal structure of Methanothermobacter thermautotrophicus orotidine 5'-monophosphate decarboxylase covalently modified by 5-fluoro-6-azido-UMP
To be Published
7XV9
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BU of 7xv9 by Molmil
Crystal structure of the Human TR4 DNA-Binding Domain
分子名称: Nuclear receptor subfamily 2 group C member 2, ZINC ION
著者Liu, Y, Chen, Z.
登録日2022-05-21
公開日2022-12-28
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.599 Å)
主引用文献Structures of human TR4LBD-JAZF1 and TR4DBD-DNA complexes reveal the molecular basis of transcriptional regulation.
Nucleic Acids Res., 51, 2023
7XV8
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BU of 7xv8 by Molmil
Crystal structure of the Human TR4 DNA-Binding Domain Homodimer Bound to DR1 Response Element
分子名称: DNA (5'-D(*CP*TP*GP*AP*CP*CP*TP*TP*TP*GP*AP*CP*CP*TP*CP*TP*GP*C)-3'), DNA (5'-D(*GP*GP*CP*AP*GP*AP*GP*GP*TP*CP*AP*AP*AP*GP*GP*TP*CP*A)-3'), Nuclear receptor subfamily 2 group C member 2, ...
著者Liu, Y, Chen, Z.
登録日2022-05-21
公開日2022-12-28
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.199 Å)
主引用文献Structures of human TR4LBD-JAZF1 and TR4DBD-DNA complexes reveal the molecular basis of transcriptional regulation.
Nucleic Acids Res., 51, 2023
7XV6
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BU of 7xv6 by Molmil
Crystal structure of the Human TR4 DNA-Binding Domain with C-terminal extension (DBD-CTE) Homodimer Bound to DR1 Response Element
分子名称: DNA (5'-D(*CP*TP*GP*AP*CP*CP*TP*TP*TP*GP*AP*CP*CP*TP*CP*TP*GP*C)-3'), DNA (5'-D(*GP*GP*CP*AP*GP*AP*GP*GP*TP*CP*AP*AP*AP*GP*GP*TP*CP*A)-3'), NR2C2 protein, ...
著者Liu, Y, Chen, Z.
登録日2022-05-21
公開日2022-12-28
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structures of human TR4LBD-JAZF1 and TR4DBD-DNA complexes reveal the molecular basis of transcriptional regulation.
Nucleic Acids Res., 51, 2023
7XVA
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BU of 7xva by Molmil
Crystal structure of the Human TR4 Ligand Binding Domain in complex with the JAZF1 corepressor fragment
分子名称: Juxtaposed with another zinc finger protein 1, Nuclear receptor subfamily 2 group C member 2
著者Liu, Y, Chen, Z.
登録日2022-05-21
公開日2022-12-28
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.856 Å)
主引用文献Structures of human TR4LBD-JAZF1 and TR4DBD-DNA complexes reveal the molecular basis of transcriptional regulation.
Nucleic Acids Res., 51, 2023
8H43
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BU of 8h43 by Molmil
Crystal structure of PHF1 Tudor domain in complex with hit 1
分子名称: 2-[(3S)-piperidin-3-yl]-1,3-benzoxazole, PHD finger protein 1
著者Liu, Y, Ruan, K.
登録日2022-10-10
公開日2023-10-18
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structure of PHF1 Tudor domain in complex with hit 1
To be published
8HNI
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BU of 8hni by Molmil
hnRNP A2/B1 RRMs in complex with telomeric DNA
分子名称: DNA (5'-D(P*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*T)-3'), Heterogeneous nuclear ribonucleoproteins A2/B1
著者Liu, Y, Abula, A, Xiao, H, Guo, H, Li, T, Zheng, L, Chen, B, Nguyen, H, Ji, X.
登録日2022-12-07
公開日2023-11-29
実験手法X-RAY DIFFRACTION (2.644 Å)
主引用文献Structural Insight Into hnRNP A2/B1 Homodimerization and DNA Recognition.
J.Mol.Biol., 435, 2023
6LB3
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BU of 6lb3 by Molmil
Crystal structure of PA4674 in complex with its operator DNA (18bp) from Pseudomonas aeruginosa
分子名称: DNA (5'-D(P*AP*CP*CP*CP*TP*TP*AP*AP*CP*GP*TP*TP*AP*AP*GP*CP*GP*T)-3'), DNA (5'-D(P*AP*CP*GP*CP*TP*TP*AP*AP*CP*GP*TP*TP*AP*AP*GP*GP*GP*T)-3'), HTH cro/C1-type domain-containing protein, ...
著者Liu, Y, Zhang, H, Gao, Z, Dong, Y.
登録日2019-11-13
公開日2020-11-18
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.497 Å)
主引用文献Crystal structure of PA4674 in complex with its operator DNA (18bp) from Pseudomonas aeruginosa
To Be Published
7DZY
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BU of 7dzy by Molmil
Spike protein from SARS-CoV2 with Fab fragment of enhancing antibody 2490
分子名称: Fab Heavy chain of enhancing antibody 2490, Fab light chain of enhancing antibody 2490, Spike glycoprotein
著者Liu, Y, Soh, W.T, Li, S, Kishikawa, J, Hirose, M, Kato, T, Standley, D, Okada, M, Arase, H.
登録日2021-01-26
公開日2021-06-02
最終更新日2024-06-05
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献An infectivity-enhancing site on the SARS-CoV-2 spike protein targeted by antibodies.
Cell, 184, 2021
7DZW
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BU of 7dzw by Molmil
Apo spike protein from SARS-CoV2
分子名称: Spike glycoprotein
著者Liu, Y, Soh, W.T, Li, S, Kishikawa, J, Hirose, M, Kato, T, Standley, D, Okada, M, Arase, H.
登録日2021-01-26
公開日2021-06-02
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (3.45 Å)
主引用文献An infectivity-enhancing site on the SARS-CoV-2 spike protein targeted by antibodies.
Cell, 184, 2021
7DZX
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BU of 7dzx by Molmil
Spike protein from SARS-CoV2 with Fab fragment of enhancing antibody 8D2
分子名称: Fab Heavy chain of enhancing antibody, Fab light chain of enhancing antibody, Spike glycoprotein
著者Liu, Y, Soh, W.T, Li, S, Kishikawa, J, Hirose, M, Kato, T, Standley, D, Okada, M, Arase, H.
登録日2021-01-26
公開日2021-06-02
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (3.53 Å)
主引用文献An infectivity-enhancing site on the SARS-CoV-2 spike protein targeted by antibodies.
Cell, 184, 2021
7WDL
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BU of 7wdl by Molmil
Fungal immunomodulatory protein FIP-nha
分子名称: Fungal immunomodulatory protein
著者Liu, Y, Bastiaan-Net, S, Zhang, Y, Hoppenbrouwers, T, Xie, Y, Wang, Y, Wei, X, Du, G, Zhang, H, Imam, K.M.S.U, Wichers, H.J, Li, Z.
登録日2021-12-22
公開日2022-06-29
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.903 Å)
主引用文献Linking the thermostability of FIP-nha (Nectria haematococca) to its structural properties.
Int.J.Biol.Macromol., 213, 2022
5ZEV
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BU of 5zev by Molmil
Solution structure of G-quadruplex formed in vegfr-2 proximal promoter sequence
分子名称: DNA (5'-D(*GP*GP*GP*TP*AP*CP*CP*CP*GP*GP*GP*TP*GP*AP*GP*GP*TP*GP*CP*GP*GP*GP*GP*T)-3')
著者Liu, Y, Lan, W.X.
登録日2018-02-28
公開日2018-04-18
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献A putative G-quadruplex structure in the proximal promoter ofVEGFR-2has implications for drug design to inhibit tumor angiogenesis.
J. Biol. Chem., 293, 2018
7WDM
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BU of 7wdm by Molmil
Fungal immunomodulatory protein FIP-gmi
分子名称: Immunomodulatory protein
著者Liu, Y, Bastiaan-Net, S, Zhang, Y, Hoppenbrouwers, T, Xie, Y, Wang, Y, Wei, X, Du, G, Zhang, H, Imam, K.M.S.U, Wichers, H.J, Li, Z.
登録日2021-12-22
公開日2022-12-28
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.123 Å)
主引用文献Linking the thermostability of FIP-nha (Nectria haematococca) to its structural properties
To Be Published
6JHP
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BU of 6jhp by Molmil
Crystal structure of the glycoside hydrolase family 36 alpha-galactosidase from Paecilomyces thermophila
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Alpha-galactosidase
著者Liu, Y, Huang, P, Ma, J, Jiang, Z.
登録日2019-02-18
公開日2020-05-20
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.559 Å)
主引用文献Crystal structure and phylogenetic analysis of the glycoside hydrolase family 36 alpha-galactosidase from Paecilomyces thermophila
To be published
6L8U
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BU of 6l8u by Molmil
Crystal structure of human BCDIN3D in complex with SAH
分子名称: RNA 5'-monophosphate methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE
著者Liu, Y, Martinez, A, Yamashita, S, Tomita, K.
登録日2019-11-07
公開日2019-12-25
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.925 Å)
主引用文献Crystal structure of human cytoplasmic tRNAHis-specific 5'-monomethylphosphate capping enzyme.
Nucleic Acids Res., 48, 2020
7DL5
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BU of 7dl5 by Molmil
Crystal structure of Thermotoga Maritima ferritin mutant at 2.3 Angstrom resolution
分子名称: FE (III) ION, Ferritin, MAGNESIUM ION
著者Liu, Y, Leng, X, Zang, J, Zhao, G.
登録日2020-11-26
公開日2021-12-01
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献A short helix regulates conversion of dimeric and 24-meric ferritin architectures.
Int.J.Biol.Macromol., 203, 2022
7DZN
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BU of 7dzn by Molmil
Crystal Structure of the cross-restricted T18A TCR and HLAB4201 bound to HIV-1 Gag TL9 peptide
分子名称: Beta-2-microglobulin, Gag-Pol polyprotein, MHC class I antigen, ...
著者Liu, Y, Yin, L.
登録日2021-01-25
公開日2022-01-26
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.63 Å)
主引用文献Cross-reactive TCR with alloreactivity for immunodominant HIV-1 epitope Gag TL9 with enhanced control of viral infection
Biorxiv, 2021
7DZM
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BU of 7dzm by Molmil
Crystal Structure of the cross-restricted T18A TCR and HLAB8101 bound to HIV-1 Gag TL9 peptide
分子名称: Beta-2-microglobulin, Gag-Pol polyprotein, MHC class I antigen, ...
著者Liu, Y, Yin, L.
登録日2021-01-25
公開日2022-01-26
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Cross-reactive TCR with alloreactivity for immunodominant HIV-1 epitope Gag TL9 with enhanced control of viral infection
Biorxiv, 2021
7FA3
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BU of 7fa3 by Molmil
Selenomethionine-derived structure of Aca1 in Pseudomonas phage JBD30
分子名称: Aca1
著者Liu, Y, Zhang, L, Wu, B, Huang, H.
登録日2021-07-05
公開日2021-07-21
最終更新日2022-02-02
実験手法X-RAY DIFFRACTION (1.847 Å)
主引用文献Structural basis for anti-CRISPR repression mediated by bacterial operon proteins Aca1 and Aca2.
J.Biol.Chem., 297, 2021
7X9X
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BU of 7x9x by Molmil
Thermotoga Maritima ferritin variant-Tm-E(G40E) with Zn
分子名称: FE (III) ION, Ferritin, ZINC ION
著者Liu, Y, Zhao, G.
登録日2022-03-16
公開日2023-02-15
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Directed Self-Assembly of Dimeric Building Blocks into Networklike Protein Origami to Construct Hydrogels.
Acs Nano, 16, 2022
7XA4
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BU of 7xa4 by Molmil
Thermotoga maritima ferritin variant-Tm-E (S111H) with Zn
分子名称: Ferritin, ZINC ION
著者Liu, Y, Zhao, G.
登録日2022-03-17
公開日2023-02-15
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.96 Å)
主引用文献Directed Self-Assembly of Dimeric Building Blocks into Networklike Protein Origami to Construct Hydrogels.
Acs Nano, 16, 2022
7XA2
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BU of 7xa2 by Molmil
Thermotoga maritima ferritin variant-Tm-E(S111H)
分子名称: FE (III) ION, Ferritin
著者Liu, Y, Zhao, G.
登録日2022-03-16
公開日2023-02-15
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.84 Å)
主引用文献Directed Self-Assembly of Dimeric Building Blocks into Networklike Protein Origami to Construct Hydrogels.
Acs Nano, 16, 2022
7W5M
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BU of 7w5m by Molmil
Crystal structure of AtNASP in complex of H3 alpha3 helix peptide
分子名称: GLYCEROL, H3 alpha3 helix peptide, SULFATE ION, ...
著者Liu, Y, Bao, H.
登録日2021-11-30
公開日2022-05-18
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Structural basis for histone H3 recognition by NASP in Arabidopsis.
J Integr Plant Biol, 64, 2022
6CV5
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BU of 6cv5 by Molmil
CryoEM structure of human enterovirus D68 full particle (after incubation with low molecular weight heparin)
分子名称: viral protein 1, viral protein 2, viral protein 3, ...
著者Liu, Y, Rossmann, M.G.
登録日2018-03-27
公開日2019-07-24
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (2.79 Å)
主引用文献Bypassing pan-enterovirus host factor PLA2G16.
Nat Commun, 10, 2019

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