Loading
PDBj
メニューPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
5DF7
DownloadVisualize
BU of 5df7 by Molmil
CRYSTAL STRUCTURE OF PENICILLIN-BINDING PROTEIN 3 FROM PSEUDOMONAS AERUGINOSA IN COMPLEX WITH AZLOCILLIN
分子名称: (2R,4S)-5,5-dimethyl-2-[(1R)-2-oxo-1-{[(2R)-2-{[(2-oxoimidazolidin-1-yl)carbonyl]amino}-2-phenylacetyl]amino}ethyl]-1,3-thiazolidine-4-carboxylic acid, CHLORIDE ION, Cell division protein, ...
著者Ren, J, Nettleship, J.E, Males, A, Stuart, D.I, Owens, R.J.
登録日2015-08-26
公開日2016-01-13
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structures of penicillin-binding protein 3 in complexes with azlocillin and cefoperazone in both acylated and deacylated forms.
Febs Lett., 590, 2016
5DHX
DownloadVisualize
BU of 5dhx by Molmil
HIV-1 Rev NTD dimers with variable crossing angles
分子名称: Anti-Rev Antibody Fab single-chain variable fragment, light chain,Anti-Rev Antibody Fab single-chain variable fragment, heavy chain, ...
著者DiMattia, M.A, Watts, N.R, Wingfield, P.T, Grimes, J.M, Stuart, D.I, Steven, A.C.
登録日2015-08-31
公開日2016-06-22
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献The Structure of HIV-1 Rev Filaments Suggests a Bilateral Model for Rev-RRE Assembly.
Structure, 24, 2016
5DHZ
DownloadVisualize
BU of 5dhz by Molmil
HIV-1 Rev NTD dimers with variable crossing angles
分子名称: Anti-Rev Antibody Fab single-chain variable fragment, heavy chain, light chain, ...
著者DiMattia, M.A, Watts, N.R, Wingfield, P.T, Grimes, J.M, Stuart, D.I, Steven, A.C.
登録日2015-08-31
公開日2016-06-29
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (4.3 Å)
主引用文献The Structure of HIV-1 Rev Filaments Suggests a Bilateral Model for Rev-RRE Assembly.
Structure, 24, 2016
2W0C
DownloadVisualize
BU of 2w0c by Molmil
X-ray structure of the entire lipid-containing bacteriophage PM2
分子名称: CALCIUM ION, MAJOR CAPSID PROTEIN P2, PROTEIN 2, ...
著者Abrescia, N.G.A, Grimes, J.M, Kivela, H.M, Assenberg, R, Sutton, G.C, Butcher, S.J, Bamford, J.K.H, Bamford, D.H, Stuart, D.I.
登録日2008-08-13
公開日2008-09-23
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (7 Å)
主引用文献Insights Into Virus Evolution and Membrane Biogenesis from the Structure of the Marine Lipid-Containing Bacteriophage Pm2
Mol.Cell, 31, 2008
5FJ6
DownloadVisualize
BU of 5fj6 by Molmil
Structure of the P2 polymerase inside in vitro assembled bacteriophage phi6 polymerase complex
分子名称: MANGANESE (II) ION, RNA-DIRECTED RNA POLYMERASE
著者Ilca, S, Kotecha, A, Sun, X, Poranen, M.P, Stuart, D.I, Huiskonen, J.T.
登録日2015-10-06
公開日2015-11-04
最終更新日2024-05-08
実験手法ELECTRON MICROSCOPY (7.9 Å)
主引用文献Localized Reconstruction of Subunits from Electron Cryomicroscopy Images of Macromolecular Complexes.
Nat.Commun., 6, 2015
8CI3
DownloadVisualize
BU of 8ci3 by Molmil
Structure of bovine CD46 ectodomain (SCR 1-2)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, ...
著者Aitkenhead, H, David I Stuart, D.I, El Omari, K.
登録日2023-02-08
公開日2023-07-12
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (2.33 Å)
主引用文献Structure of Bovine CD46 Ectodomain.
Viruses, 15, 2023
5FJ7
DownloadVisualize
BU of 5fj7 by Molmil
Structure of the P2 polymerase inside in vitro assembled bacteriophage phi6 polymerase complex, with P1 included
分子名称: MAJOR INNER PROTEIN P1, MANGANESE (II) ION, RNA-DIRECTED RNA POLYMERASE
著者Ilca, S, Kotecha, A, Sun, X, Poranen, M.P, Stuart, D.I, Huiskonen, J.T.
登録日2015-10-06
公開日2015-11-04
最終更新日2024-05-08
実験手法ELECTRON MICROSCOPY (7.9 Å)
主引用文献Localized Reconstruction of Subunits from Electron Cryomicroscopy Images of Macromolecular Complexes.
Nat.Commun., 6, 2015
5FJ5
DownloadVisualize
BU of 5fj5 by Molmil
Structure of the in vitro assembled bacteriophage phi6 polymerase complex
分子名称: MAJOR INNER PROTEIN P1
著者Ilca, S, Kotecha, A, Sun, X, Poranen, M.P, Stuart, D.I, Huiskonen, J.T.
登録日2015-10-06
公開日2015-11-04
最終更新日2024-05-08
実験手法ELECTRON MICROSCOPY (4.8 Å)
主引用文献Localized Reconstruction of Subunits from Electron Cryomicroscopy Images of Macromolecular Complexes.
Nat.Commun., 6, 2015
8CII
DownloadVisualize
BU of 8cii by Molmil
Delta-RBD complex with BA.2-07 fab, SARS1-34 fab and C1 nanobody
分子名称: BA.2-07 fab Heavy Chain, BA.2-07 fab Light Chain, C1 nanobody, ...
著者Duyvesteyn, H.M.E, Ren, J, Stuart, D.I, Fry, E.E.
登録日2023-02-09
公開日2024-02-21
最終更新日2024-11-06
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献Potent cross-reactive mAbs from BA.4/5 breakthrough infection
To Be Published
8CIN
DownloadVisualize
BU of 8cin by Molmil
BA.4/5-5 FAB IN COMPLEX WITH SARS-COV-2 BA.4 SPIKE GLYCOPROTEIN
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, BA.4/5-5 fab HEAVY CHAIN, ...
著者Duyvesteyn, H.M.E, Ren, J, Stuart, D.I, Fry, E.E.
登録日2023-02-10
公開日2024-02-21
最終更新日2024-11-20
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献The SARS-CoV-2 neutralizing antibody response to SD1 and its evasion by BA.2.86.
Nat Commun, 15, 2024
8BP8
DownloadVisualize
BU of 8bp8 by Molmil
SPA of Trypsin untreated Rotavirus TLP spike
分子名称: CALCIUM ION, Inner capsid protein VP2, Intermediate capsid protein VP6, ...
著者Shah, P.N.M, Stuart, D.I.
登録日2022-11-16
公開日2023-04-05
最終更新日2024-11-06
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献Characterization of the rotavirus assembly pathway in situ using cryoelectron tomography.
Cell Host Microbe, 31, 2023
8COA
DownloadVisualize
BU of 8coa by Molmil
in situ Subtomogram average of Immature Rotavirus TLP spike
分子名称: Intermediate capsid protein VP6, Outer capsid glycoprotein VP7, Outer capsid protein VP4
著者Shah, P.N.M, Stuart, D.I.
登録日2023-02-27
公開日2023-04-05
最終更新日2024-10-09
実験手法ELECTRON MICROSCOPY (4.5 Å)
主引用文献Characterization of the rotavirus assembly pathway in situ using cryoelectron tomography.
Cell Host Microbe, 31, 2023
8CO6
DownloadVisualize
BU of 8co6 by Molmil
Subtomogram average of Immature Rotavirus TLP penton
分子名称: Inner capsid protein VP2, Intermediate capsid protein VP6, Outer capsid glycoprotein VP7, ...
著者Shah, P.N.M, Stuart, D.I.
登録日2023-02-27
公開日2023-05-10
最終更新日2024-11-06
実験手法ELECTRON MICROSCOPY (4.7 Å)
主引用文献Characterization of the rotavirus assembly pathway in situ using cryoelectron tomography.
Cell Host Microbe, 31, 2023
8CIM
DownloadVisualize
BU of 8cim by Molmil
BA.2-07 FAB IN COMPLEX WITH SARS-COV-2 BA.2.12.1 SPIKE GLYCOPROTEIN
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, BA.2-07 FAB HEAVY CHAIN, ...
著者Duyvesteyn, H.M.E, Ren, J, Stuart, D.I, Fry, E.E.
登録日2023-02-10
公開日2023-07-05
最終更新日2024-10-23
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Isolation of a pair of potent broadly neutralizing mAb binding to RBD and SD1 domains of SARS-CoV-2
Res Sq, 2023
1VCA
DownloadVisualize
BU of 1vca by Molmil
CRYSTAL STRUCTURE OF AN INTEGRIN-BINDING FRAGMENT OF VASCULAR CELL ADHESION MOLECULE-1 AT 1.8 ANGSTROMS RESOLUTION
分子名称: HUMAN VASCULAR CELL ADHESION MOLECULE-1
著者Jones, E.Y, Harlos, K, Bottomley, M.J, Robinson, R.C, Driscoll, P.C, Edwards, R.M, Clements, J.M, Dudgeon, T.J, Stuart, D.I.
登録日1995-03-21
公開日1995-09-15
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure of an integrin-binding fragment of vascular cell adhesion molecule-1 at 1.8 A resolution.
Nature, 373, 1995
4X35
DownloadVisualize
BU of 4x35 by Molmil
A micro-patterned silicon chip as sample holder for macromolecular crystallography experiments with minimal background scattering
分子名称: ADENOSINE-5'-TRIPHOSPHATE, CHLORIDE ION, GUANOSINE-5'-TRIPHOSPHATE, ...
著者Roedig, P, Vartiainen, I, Duman, R, Panneerselvam, S, Stuebe, N, Lorbeer, O, Warmer, M, Sutton, G, Stuart, D.I, Weckert, E, David, C, Wagner, A, Meents, A.
登録日2014-11-27
公開日2015-06-10
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献A micro-patterned silicon chip as sample holder for macromolecular crystallography experiments with minimal background scattering.
Sci Rep, 5, 2015
6G9B
DownloadVisualize
BU of 6g9b by Molmil
Crystal structure of Ebolavirus glycoprotein in complex with imipramine
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 3-(5H-DIBENZO[B,F]AZEPIN-5-YL)-N,N-DIMETHYLPROPAN-1-AMINE, ...
著者Zhao, Y, Ren, J, Fry, E.E, Xiao, J, Townsend, A.R, Stuart, D.I.
登録日2018-04-10
公開日2018-05-23
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (2.26 Å)
主引用文献Structures of Ebola Virus Glycoprotein Complexes with Tricyclic Antidepressant and Antipsychotic Drugs.
J. Med. Chem., 61, 2018
6G95
DownloadVisualize
BU of 6g95 by Molmil
Crystal structure of Ebolavirus glycoprotein in complex with thioridazine
分子名称: 10-{2-[(2R)-1-methylpiperidin-2-yl]ethyl}-2-(methylsulfanyl)-10H-phenothiazine, 2-acetamido-2-deoxy-beta-D-glucopyranose, DIMETHYL SULFOXIDE, ...
著者Zhao, Y, Ren, J, Fry, E.E, Xiao, J, Townsend, A.R, Stuart, D.I.
登録日2018-04-10
公開日2018-05-23
最終更新日2024-11-13
実験手法X-RAY DIFFRACTION (2.31 Å)
主引用文献Structures of Ebola Virus Glycoprotein Complexes with Tricyclic Antidepressant and Antipsychotic Drugs.
J. Med. Chem., 61, 2018
6G9I
DownloadVisualize
BU of 6g9i by Molmil
Crystal structure of Ebolavirus glycoprotein in complex with clomipramine
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 3-(3-CHLORO-5H-DIBENZO[B,F]AZEPIN-5-YL)-N,N-DIMETHYLPROPAN-1-AMINE, Envelope glycoprotein,Envelope glycoprotein, ...
著者Zhao, Y, Ren, J, Fry, E.E, Xiao, J, Townsend, A.R, Stuart, D.I.
登録日2018-04-10
公開日2018-05-23
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (2.19 Å)
主引用文献Structures of Ebola Virus Glycoprotein Complexes with Tricyclic Antidepressant and Antipsychotic Drugs.
J. Med. Chem., 61, 2018
6YB7
DownloadVisualize
BU of 6yb7 by Molmil
SARS-CoV-2 main protease with unliganded active site (2019-nCoV, coronavirus disease 2019, COVID-19).
分子名称: 3C-like proteinase, DI(HYDROXYETHYL)ETHER, DIMETHYL SULFOXIDE
著者Owen, C.D, Lukacik, P, Strain-Damerell, C.M, Douangamath, A, Powell, A.J, Fearon, D, Brandao-Neto, J, Crawshaw, A.D, Aragao, D, Williams, M, Flaig, R, Hall, D.R, McAuley, K.E, Mazzorana, M, Stuart, D.I, von Delft, F, Walsh, M.A.
登録日2020-03-16
公開日2020-03-25
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.25 Å)
主引用文献COVID-19 main protease with unliganded active site
To Be Published
6Y84
DownloadVisualize
BU of 6y84 by Molmil
SARS-CoV-2 main protease with unliganded active site (2019-nCoV, coronavirus disease 2019, COVID-19)
分子名称: 3C-like proteinase nsp5, DIMETHYL SULFOXIDE
著者Owen, C.D, Lukacik, P, Strain-Damerell, C.M, Douangamath, A, Powell, A.J, Fearon, D, Brandao-Neto, J, Crawshaw, A.D, Aragao, D, Williams, M, Flaig, R, Hall, D.R, McAuley, K.E, Mazzorana, M, Stuart, D.I, von Delft, F, Walsh, M.A.
登録日2020-03-03
公開日2020-03-11
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.39 Å)
主引用文献COVID-19 main protease with unliganded active site
To Be Published
6H3B
DownloadVisualize
BU of 6h3b by Molmil
Lysozyme: Machining protein microcrystals for structure determination by electron diffraction
分子名称: CHLORIDE ION, Lysozyme C
著者Duyvesteyn, H.M.E, Ginn, H.M, Stuart, D.I.
登録日2018-07-18
公開日2018-09-12
最終更新日2024-11-13
実験手法ELECTRON CRYSTALLOGRAPHY (1.9 Å)
主引用文献Machining protein microcrystals for structure determination by electron diffraction.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
4X3B
DownloadVisualize
BU of 4x3b by Molmil
A micro-patterned silicon chip as sample holder for macromolecular crystallography experiments with minimal background scattering
分子名称: CHLORIDE ION, Lysozyme C, SODIUM ION
著者Roedig, P, Vartiainen, I, Duman, R, Panneerselvam, S, Stuebe, N, Lorbeer, O, Warmer, M, Sutton, G, Stuart, D.I, Weckert, E, David, C, Wagner, A, Meents, A.
登録日2014-11-28
公開日2015-06-10
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献A micro-patterned silicon chip as sample holder for macromolecular crystallography experiments with minimal background scattering.
Sci Rep, 5, 2015
6YM0
DownloadVisualize
BU of 6ym0 by Molmil
Crystal structure of the SARS-CoV-2 receptor binding domain in complex with CR3022 Fab (crystal form 1)
分子名称: Spike glycoprotein, heavy chain, light chain
著者Huo, J, Zhao, Y, Ren, J, Zhou, D, Ginn, H.M, Fry, E.E, Owens, R, Stuart, D.I.
登録日2020-04-07
公開日2020-04-29
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (4.36 Å)
主引用文献Neutralization of SARS-CoV-2 by Destruction of the Prefusion Spike.
Cell Host Microbe, 28, 2020
6YOR
DownloadVisualize
BU of 6yor by Molmil
Structure of the SARS-CoV-2 spike S1 protein in complex with CR3022 Fab
分子名称: IgG H chain, IgG L chain, Spike glycoprotein
著者Huo, J, Zhao, Y, Ren, J, Zhou, D, Duyvesteyn, H.M.E, Carrique, L, Malinauskas, T, Ruza, R.R, Shah, P.N.M, Fry, E.E, Owens, R, Stuart, D.I.
登録日2020-04-15
公開日2020-04-29
最終更新日2025-07-02
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Neutralization of SARS-CoV-2 by Destruction of the Prefusion Spike.
Cell Host Microbe, 28, 2020

238582

件を2025-07-09に公開中

PDB statisticsPDBj update infoContact PDBjnumon