Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
1GFD
DownloadVisualize
BU of 1gfd by Molmil
SOLUTION STRUCTURE AND LIGAND-BINDING SITE OF THE C-TERMINAL SH3 DOMAIN OF GRB2
分子名称: GROWTH FACTOR RECEPTOR-BOUND PROTEIN 2
著者Kohda, D, Terasawa, H, Hatanaka, H, Inagaki, F.
登録日1994-06-13
公開日1994-08-31
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Solution structure and ligand-binding site of the carboxy-terminal SH3 domain of GRB2.
Structure, 2, 1994
2ON9
DownloadVisualize
BU of 2on9 by Molmil
Structure of an amyloid forming peptide VQIVYK from the repeat region of Tau
分子名称: VQIVYK peptide corresponding to residues 306-311 in the tau protein
著者Sambashivan, S, Sawaya, M.R, Eisenberg, D.
登録日2007-01-23
公開日2007-01-30
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.51 Å)
主引用文献Atomic structures of amyloid cross-beta spines reveal varied steric zippers.
Nature, 447, 2007
2ONX
DownloadVisualize
BU of 2onx by Molmil
NNQQ peptide corresponding to residues 8-11 of yeast prion sup35 (alternate crystal form)
分子名称: peptide corresponding to residues 8-11 of yeast prion sup35
著者Sawaya, M.R, Sambashivan, S, Nelson, R, Ivanova, M, Sievers, S.A, Apostol, M.I, Thompson, M.J, Balbirnie, M, Wiltzius, J.J, McFarlane, H, Madsen, A.O, Riekel, C, Eisenberg, D.
登録日2007-01-24
公開日2007-02-06
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.52 Å)
主引用文献Atomic structures of amyloid cross-beta spines reveal varied steric zippers.
Nature, 447, 2007
3WPM
DownloadVisualize
BU of 3wpm by Molmil
Crystal structure of the anaerobic DesB-gallate complex by co-crystallization
分子名称: 3,4,5-trihydroxybenzoic acid, FE (III) ION, Gallate dioxygenase
著者Sugimoto, K, Senda, M, Kasai, D, Fukuda, M, Masai, E, Senda, T.
登録日2014-01-14
公開日2014-04-30
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Molecular Mechanism of Strict Substrate Specificity of an Extradiol Dioxygenase, DesB, Derived from Sphingobium sp. SYK-6
Plos One, 9, 2014
3EMN
DownloadVisualize
BU of 3emn by Molmil
The Crystal Structure of Mouse VDAC1 at 2.3 A resolution
分子名称: 1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE, Voltage-dependent anion-selective channel protein 1
著者Ujwal, R, Cascio, D, Colletier, J.-P, Faham, S, Zhang, J, Toro, L, Ping, P, Abramson, J.
登録日2008-09-24
公開日2008-12-16
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献The crystal structure of mouse VDAC1 at 2.3 A resolution reveals mechanistic insights into metabolite gating
Proc.Natl.Acad.Sci.USA, 105, 2008
3ELZ
DownloadVisualize
BU of 3elz by Molmil
Crystal structure of Zebrafish Ileal Bile Acid-Bindin Protein complexed with cholic acid (crystal form A).
分子名称: CHOLIC ACID, ileal Bile Acid-Binding Protein
著者Capaldi, S, Saccomani, G, Fessas, D, Signorelli, M, Perduca, M, Monaco, H.L.
登録日2008-09-23
公開日2009-01-13
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献The X-Ray structure of zebrafish (Danio rerio) ileal bile acid-binding protein reveals the presence of binding sites on the surface of the protein molecule.
J.Mol.Biol., 385, 2009
2OQI
DownloadVisualize
BU of 2oqi by Molmil
Human Dipeptidyl Peptidase IV (DPP4) with Piperidinone-constrained phenethylamine
分子名称: (4R,5R)-5-AMINO-1-[2-(1,3-BENZODIOXOL-5-YL)ETHYL]-4-(2,4,5-TRIFLUOROPHENYL)PIPERIDIN-2-ONE, Dipeptidyl peptidase 4 (Dipeptidyl peptidase IV) (DPP IV) (T-cell activation antigen CD26) (TP103) (Adenosine deaminase complexing protein 2) (ADABP)
著者Pei, Z, Li, X, von Geldern, T.W, Longenecker, K.L, Pireh, D, Stewart, K.D, Backes, B.J, Lai, C, Lubben, T.H, Ballaron, S.J, Beno, D.W, Kempf-Grote, A.J, Sham, H.L, Trevillyan, J.M.
登録日2007-01-31
公開日2007-04-03
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Discovery and Structure-Activity Relationships of Piperidinone- and Piperidine-Constrained Phenethylamines as Novel, Potent, and Selective Dipeptidyl Peptidase IV Inhibitors.
J.Med.Chem., 50, 2007
3WR4
DownloadVisualize
BU of 3wr4 by Molmil
Crystal structure of the anaerobic DesB-gallate complex
分子名称: 3,4,5-trihydroxybenzoic acid, FE (III) ION, Gallate dioxygenase
著者Sugimoto, K, Senda, M, Kasai, D, Fukuda, M, Masai, E, Senda, T.
登録日2014-02-13
公開日2014-04-30
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Molecular Mechanism of Strict Substrate Specificity of an Extradiol Dioxygenase, DesB, Derived from Sphingobium sp. SYK-6
Plos One, 9, 2014
3KL9
DownloadVisualize
BU of 3kl9 by Molmil
Crystal structure of PepA from Streptococcus pneumoniae
分子名称: Glutamyl aminopeptidase, ZINC ION
著者Kim, K.K, Lee, S, Kim, D.
登録日2009-11-07
公開日2010-02-02
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structural basis for the substrate specificity of PepA from Streptococcus pneumoniae, a dodecameric tetrahedral protease
Biochem.Biophys.Res.Commun., 391, 2010
1GL3
DownloadVisualize
BU of 1gl3 by Molmil
ASPARTATE BETA-SEMIALDEHYDE DEHYDROGENASE IN COMPLEX WITH NADP AND SUBSTRATE ANALOGUE S-METHYL CYSTEINE SULFOXIDE
分子名称: ASPARTATE-SEMIALDEHYDE DEHYDROGENASE, CYSTEINE, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
著者Hadfield, A.T, Kryger, G, Ouyang, J, Ringe, D, Petsko, G.A, Viola, R.E.
登録日2001-08-23
公開日2001-11-01
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Active Site Analysis of the Potential Antimicrobial Target Aspartate Semialdehyde Dehydrogenase.
Biochemistry, 40, 2001
1GKQ
DownloadVisualize
BU of 1gkq by Molmil
D-Hydantoinase (Dihydropyrimidinase) from Thermus sp. in space group P212121
分子名称: HYDANTOINASE, ZINC ION
著者Abendroth, J, Niefind, K, Schomburg, D.
登録日2001-08-20
公開日2002-06-27
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献X-Ray Structure of a Dihydropyrimidinase from Thermus Sp. At 1.3 A Resolution
J.Mol.Biol., 320, 2002
1GJQ
DownloadVisualize
BU of 1gjq by Molmil
Pseudomonas aeruginosa cd1 nitrite reductase reduced cyanide complex
分子名称: CYANIDE ION, HEME C, HEME D, ...
著者Nurizzo, D, Brown, K, Tegoni, M, Cambillau, C.
登録日2001-08-01
公開日2002-08-01
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Cyanide Binding to Cd(1) Nitrite Reductase from Pseudomonas Aeruginosa: Role of the Active-Site His369 in Ligand Stabilization.
Biochem.Biophys.Res.Commun., 291, 2002
2OPX
DownloadVisualize
BU of 2opx by Molmil
Crystal Structure of Lactaldehyde Dehydrogenase from Escherichia coli
分子名称: (3ALPHA,5BETA,12ALPHA)-3,12-DIHYDROXYCHOLAN-24-OIC ACID, Aldehyde dehydrogenase A
著者Francuski, D, Rossocha, M, Saenger, W.
登録日2007-01-30
公開日2007-02-20
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.53 Å)
主引用文献Crystal Structure of Lactaldehyde Dehydrogenase from Escherichia coli
To be Published
3KPQ
DownloadVisualize
BU of 3kpq by Molmil
Crystal Structure of HLA B*4405 in complex with EEYLKAWTF, a mimotope
分子名称: Beta-2-microglobulin, EEYLKAWTF, mimotope peptide, ...
著者Macdonald, W.A, Chen, Z, Gras, S, Archbold, J.K, Tynan, F.E, Clements, C.S, Bharadwaj, M, Kjer-Nielsen, L, Saunders, P.M, Wilce, M.C, Crawford, F, Stadinsky, B, Jackson, D, Brooks, A.G, Purcell, A.W, Kappler, J.W, Burrows, S.R, Rossjohn, J, McCluskey, J.
登録日2009-11-16
公開日2009-12-22
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.84 Å)
主引用文献T cell allorecognition via molecular mimicry.
Immunity, 31, 2009
3KP0
DownloadVisualize
BU of 3kp0 by Molmil
Crystal Structure of ORNITHINE 4,5 AMINOMUTASE in complex with 2,4-diaminobutyrate (DAB) (Aerobic)
分子名称: (2S)-2-amino-4-{[(1Z)-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene]amino}butanoic acid, 5'-DEOXYADENOSINE, COBALAMIN, ...
著者Wolthers, K.R, Levy, C.W, Scrutton, N.S, Leys, D.
登録日2009-11-14
公開日2010-01-26
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Large-scale domain dynamics and adenosylcobalamin reorientation orchestrate radical catalysis in ornithine 4,5-aminomutase.
J.Biol.Chem., 285, 2010
1GL9
DownloadVisualize
BU of 1gl9 by Molmil
Archaeoglobus fulgidus reverse gyrase complexed with ADPNP
分子名称: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, REVERSE GYRASE
著者Rodriguez, A.C, Stock, D.
登録日2001-08-30
公開日2002-02-11
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Crystal Structure of Reverse Gyrase: Insights Into the Positive Supercoiling of DNA.
Embo J., 21, 2002
3KSM
DownloadVisualize
BU of 3ksm by Molmil
Crystal structure of ABC-type sugar transport system, periplasmic component from Hahella chejuensis
分子名称: ABC-type sugar transport system, periplasmic component, beta-D-ribofuranose
著者Bagaria, A, Kumaran, D, Burley, S.K, Swaminathan, S, New York SGX Research Center for Structural Genomics (NYSGXRC)
登録日2009-11-23
公開日2009-12-15
最終更新日2021-02-10
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of ABC-type sugar transport system, periplasmic component from Hahella chejuensis
To be Published
3KSZ
DownloadVisualize
BU of 3ksz by Molmil
Crystal Structure of C151S+H178N mutant of Glyceraldehyde-3-phosphate-dehydrogenase 1 (GAPDH 1) from Staphylococcus aureus MRSA252 complexed with NAD and G3P
分子名称: 3-PHOSPHOGLYCERIC ACID, Glyceraldehyde-3-phosphate dehydrogenase 1, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
著者Mukherjee, S, Dutta, D, Saha, B, Das, A.K.
登録日2009-11-24
公開日2010-08-18
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Crystal structure of glyceraldehyde-3-phosphate dehydrogenase 1 from methicillin-resistant Staphylococcus aureus MRSA252 provides novel insights into substrate binding and catalytic mechanism.
J.Mol.Biol., 401, 2010
3KUD
DownloadVisualize
BU of 3kud by Molmil
Complex of Ras-GDP with RafRBD(A85K)
分子名称: GTPase HRas, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
著者Filchtinski, D, Sharabi, O, Rueppel, A, Vetter, I.R, Herrmann, C, Shifman, J.M.
登録日2009-11-27
公開日2010-03-23
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献What makes Ras an efficient molecular switch: a computational, biophysical, and structural study of Ras-GDP interactions with mutants of Raf.
J.Mol.Biol., 399, 2010
3L4Q
DownloadVisualize
BU of 3l4q by Molmil
Structural insights into phosphoinositide 3-kinase activation by the influenza A virus NS1 protein
分子名称: GLYCEROL, Non-structural protein 1, Phosphatidylinositol 3-kinase regulatory subunit beta
著者Hale, B.G, Kerry, P.S, Jackson, D, Precious, B.L, Gray, A, Killip, M.J, Randall, R.E, Russell, R.J.
登録日2009-12-21
公開日2010-02-02
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural insights into phosphoinositide 3-kinase activation by the influenza A virus NS1 protein
Proc.Natl.Acad.Sci.USA, 107, 2010
2OKZ
DownloadVisualize
BU of 2okz by Molmil
MVGGVV peptide derived from Alzheimer's A-beta
分子名称: peptide from Alzheimer's A-beta
著者Sawaya, M.R, Sambashivan, S, Eisenberg, D.
登録日2007-01-18
公開日2007-01-30
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Atomic structures of amyloid cross-beta spines reveal varied steric zippers.
Nature, 447, 2007
1GMM
DownloadVisualize
BU of 1gmm by Molmil
Carbohydrate binding module CBM6 from xylanase U Clostridium thermocellum
分子名称: CALCIUM ION, CBM6, SODIUM ION, ...
著者Czjzek, M, Mosbah, A, Bolam, D, Allouch, J, Zamboni, V, Henrissat, B, Gilbert, H.J.
登録日2001-09-19
公開日2001-11-28
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献The Location of the Ligand-Binding Site of Carbohydrate-Binding Modules that Have Evolved from a Common Sequence is not Conserved.
J.Biol.Chem., 276, 2001
3KUW
DownloadVisualize
BU of 3kuw by Molmil
Structural basis of the activity ans substrate specificity of the fluoroacetyl-CoA thioesterase FlK - T42S mutant in complex with Fluoro-acetate
分子名称: Fluoroacetyl coenzyme A thioesterase, fluoroacetic acid
著者Dias, M.V.B, Huang, F, Chirgadze, D.Y, Tosin, M, Spiteller, D, Valentine, E.F, Leadlay, P.F, Spencer, J.B, Blundell, T.L.
登録日2009-11-27
公開日2010-04-21
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural basis for the activity and substrate specificity of fluoroacetyl-CoA thioesterase FlK.
J.Biol.Chem., 285, 2010
3E80
DownloadVisualize
BU of 3e80 by Molmil
Structure of Heparinase II complexed with heparan sulfate degradation disaccharide product
分子名称: 4-deoxy-alpha-L-threo-hex-4-enopyranuronic acid-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose, Heparinase II protein, PHOSPHATE ION, ...
著者Shaya, D, Cygler, M.
登録日2008-08-19
公開日2008-12-30
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Catalytic mechanism of heparinase II investigated by site-directed mutagenesis and the crystal structure with its substrate.
J.Biol.Chem., 285, 2010
4AM5
DownloadVisualize
BU of 4am5 by Molmil
Bacterioferritin from Blastochloris viridis
分子名称: BACTERIOFERRITIN, FE (III) ION, PROTOPORPHYRIN IX CONTAINING FE
著者Wahlgren, W.Y, Omran, H, von Stetten, D, Royant, A, van der Post, S, Katona, G.
登録日2012-03-07
公開日2012-10-31
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.58 Å)
主引用文献Structural Characterization of Bacterioferritin from Blastochloris Viridis.
Plos One, 7, 2012

224004

件を2024-08-21に公開中

PDB statisticsPDBj update infoContact PDBjnumon