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7BY5
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BU of 7by5 by Molmil
Tetanus neurotoxin mutant-(H233A/E234Q/H237A/Y375F)
分子名称: 1,2-ETHANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CHLORIDE ION, ...
著者Zhang, C.M, Imoto, Y, Fukuda, Y, Yamashita, E, Inoue, T.
登録日2020-04-21
公開日2021-02-17
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.27 Å)
主引用文献Structural flexibility of the tetanus neurotoxin revealed by crystallographic and solution scattering analyses.
J Struct Biol X, 5, 2021
3A5W
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BU of 3a5w by Molmil
Peroxiredoxin (wild type) from Aeropyrum pernix K1 (reduced form)
分子名称: Probable peroxiredoxin
著者Nakamura, T, Kado, Y, Yamaguchi, T, Matsumura, H, Ishikawa, K, Inoue, T.
登録日2009-08-12
公開日2009-10-27
最終更新日2014-01-22
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of peroxiredoxin from Aeropyrum pernix K1 complexed with its substrate, hydrogen peroxide
J.Biochem., 147, 2010
2Z5G
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BU of 2z5g by Molmil
Crystal structure of T1 lipase F16L mutant
分子名称: CALCIUM ION, CHLORIDE ION, Thermostable lipase, ...
著者Matsumura, H, Yamamoto, T, Inoue, T, Kai, Y.
登録日2007-07-08
公開日2007-10-30
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Novel cation-pi interaction revealed by crystal structure of thermoalkalophilic lipase
Proteins, 70, 2007
4ZK8
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BU of 4zk8 by Molmil
Copper-containing nitrite reductase from thermophilic bacterium Geobacillus thermodenitrificans (Re-refined)
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ...
著者Fukuda, Y, Inoue, T.
登録日2015-04-30
公開日2015-05-20
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.15 Å)
主引用文献Structural insights into the function of a thermostable copper-containing nitrite reductase
J.Biochem., 155, 2014
3A2W
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BU of 3a2w by Molmil
Peroxiredoxin (C50S) from Aeropytum pernix K1 (peroxide-bound form)
分子名称: GLYCEROL, PEROXIDE ION, Probable peroxiredoxin
著者Nakamura, T, Kado, Y, Yamaguchi, F, Matsumura, H, Ishikawa, K, Inoue, T.
登録日2009-06-04
公開日2009-10-27
最終更新日2021-11-10
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structure of peroxiredoxin from Aeropyrum pernix K1 complexed with its substrate, hydrogen peroxide
J.Biochem., 147, 2010
3A2V
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BU of 3a2v by Molmil
Peroxiredoxin (C207S) from Aeropyrum pernix K1 complexed with hydrogen peroxide
分子名称: PEROXIDE ION, Probable peroxiredoxin
著者Nakamura, T, Kado, Y, Yamaguchi, F, Ishikawa, K, Matsumura, H, Inoue, T.
登録日2009-06-04
公開日2009-10-27
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Crystal structure of peroxiredoxin from Aeropyrum pernix K1 complexed with its substrate, hydrogen peroxide
J.Biochem., 147, 2010
5AVH
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BU of 5avh by Molmil
The 0.90 angstrom structure (I222) of glucose isomerase crystallized in high-strength agarose hydrogel
分子名称: Xylose isomerase
著者Sugiyama, S, Shimizu, N, Maruyama, N, Sazaki, G, Adachi, H, Takano, K, Murakami, S, Inoue, T, Mori, Y, Matsumura, H.
登録日2015-06-16
公開日2015-07-08
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (0.9 Å)
主引用文献Growth of protein crystals in hydrogels prevents osmotic shock
J.Am.Chem.Soc., 134, 2012
5AVN
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BU of 5avn by Molmil
The 1.03 angstrom structure (P212121) of glucose isomerase crystallized in high-strength agarose hydrogel
分子名称: CALCIUM ION, MANGANESE (II) ION, SULFATE ION, ...
著者Sugiyama, S, Shimizu, N, Maruyama, N, Sazaki, G, Adachi, H, Takano, K, Murakami, S, Inoue, T, Mori, Y, Matsumura, H.
登録日2015-06-23
公開日2015-07-08
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.03 Å)
主引用文献Growth of protein crystals in hydrogels prevents osmotic shock
J.Am.Chem.Soc., 134, 2012
5AVD
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BU of 5avd by Molmil
The 0.86 angstrom structure of elastase crystallized in high-strength agarose hydrogel
分子名称: Chymotrypsin-like elastase family member 1, SULFATE ION
著者Sugiyama, S, Shimizu, N, Maruyama, M, Sazaki, G, Adachi, H, Takano, K, Murakami, S, Inoue, T, Mori, Y, Matsumura, H.
登録日2015-06-15
公開日2015-07-08
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (0.86 Å)
主引用文献Growth of protein crystals in hydrogels prevents osmotic shock
J.Am.Chem.Soc., 134, 2012
5AVG
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BU of 5avg by Molmil
The 0.95 angstrom structure of thaumatin crystallized in high-strength agarose hydrogel
分子名称: Thaumatin-1
著者Sugiyama, S, Shimizu, N, Maruyama, M, Sazaki, G, Hirose, M, Adachi, H, Takano, K, Murakami, S, Inoue, T, Mori, Y, Matsumura, H.
登録日2015-06-16
公開日2015-07-08
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (0.95 Å)
主引用文献Growth of protein crystals in hydrogels prevents osmotic shock
J.Am.Chem.Soc., 134, 2012
2CZR
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BU of 2czr by Molmil
Crystal structure of TBP-interacting protein (Tk-TIP26) and implications for its inhibition mechanism of the interaction between TBP and TATA-DNA
分子名称: GLYCEROL, TBP-interacting protein, ZINC ION
著者Yamamoto, T, Matsuda, T, Inoue, T, Matsumura, H, Morikawa, M, Kanaya, S, Kai, Y.
登録日2005-07-15
公開日2006-02-14
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structure of TBP-interacting protein (Tk-TIP26) and implications for its inhibition mechanism of the interaction between TBP and TATA-DNA
Protein Sci., 15, 2006
3ATY
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BU of 3aty by Molmil
Crystal structure of TcOYE
分子名称: FLAVIN MONONUCLEOTIDE, Prostaglandin F2a synthase
著者Yamaguchi, K, Okamoto, N, Tokuoka, K, Sugiyama, S, Uchiyama, N, Matsumura, H, Inaka, K, Urade, Y, Inoue, T.
登録日2011-01-26
公開日2011-05-04
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structural insight into the stereoselective production of PGF2(alpha) by Old Yellow Enzyme from Trypanosoma cruzi
J.Biochem., 150, 2011
3APG
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BU of 3apg by Molmil
Crystal structure of hyperthermophilic beta-glucosidase from pyrococcus furiosus
分子名称: Beta-glucosidase, GLYCEROL
著者Kado, Y, Inoue, T, Ishikawa, K.
登録日2010-10-15
公開日2011-10-19
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Crystal structure of hyperthermophilic beta-glucosidase from pyrococcus furiosus
TO BE PUBLISHED
3ATZ
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BU of 3atz by Molmil
Crystal structure of TcOYE with pHBA
分子名称: FLAVIN MONONUCLEOTIDE, P-HYDROXYBENZALDEHYDE, Prostaglandin F2a synthase
著者Okamoto, N, Yamaguchi, K, Mizohata, E, Tokuoka, K, Uchiyama, N, Sugiyama, S, Matsumura, H, Inaka, K, Urade, Y, Inoue, T.
登録日2011-01-26
公開日2012-02-01
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.04 Å)
主引用文献Structural insight into the stereoselective production of PGF2(alpha) by Old Yellow Enzyme from Trypanosoma cruzi
J.Biochem., 150, 2011
3AG5
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BU of 3ag5 by Molmil
Crystal Structure of Pantothenate Synthetase from Staphylococcus aureus
分子名称: Pantothenate synthetase
著者Satoh, A, Konishi, S, Tamura, H, Stickland, H.G, Whitney, H.M, Smith, A.G, Matsumura, H, Inoue, T.
登録日2010-03-19
公開日2010-07-21
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Substrate-induced closing of the active site revealed by the crystal structure of pantothenate synthetase from Staphylococcus aureus.
Biochemistry, 49, 2010
2CW7
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BU of 2cw7 by Molmil
Crystal structure of intein homing endonuclease II
分子名称: Endonuclease PI-PkoII, SULFATE ION
著者Matsumura, H, Takahashi, H, Inoue, T, Hashimoto, H, Nishioka, M, Fujiwara, S, Takagi, M, Imanaka, T, Kai, Y.
登録日2005-06-17
公開日2006-04-18
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Crystal structure of intein homing endonuclease II encoded in DNA polymerase gene from hyperthermophilic archaeon Thermococcus kodakaraensis strain KOD1
Proteins, 63, 2006
2CW8
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BU of 2cw8 by Molmil
Crystal structure of intein homing endonuclease II
分子名称: Endonuclease PI-PkoII, GLYCEROL, SULFATE ION
著者Matsumura, H, Takahashi, H, Inoue, T, Hashimoto, H, Nishioka, M, Fujiwara, S, Takagi, M, Imanaka, T, Kai, Y.
登録日2005-06-17
公開日2006-04-18
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure of intein homing endonuclease II encoded in DNA polymerase gene from hyperthermophilic archaeon Thermococcus kodakaraensis strain KOD1
Proteins, 63, 2006
5ZIQ
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BU of 5ziq by Molmil
Crystal structure of hexacoordinated heme protein from anhydrobiotic tardigrade at pH 4
分子名称: 1,2-ETHANEDIOL, Globin protein, PROTOPORPHYRIN IX CONTAINING FE, ...
著者Kim, J, Fukuda, Y, Inoue, T.
登録日2018-03-16
公開日2019-01-02
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Crystal structure of Kumaglobin: a hexacoordinated heme protein from an anhydrobiotic tardigrade, Ramazzottius varieornatus.
FEBS J., 286, 2019
5ZM9
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BU of 5zm9 by Molmil
Crystal structure of hexacoordinated heme protein from anhydrobiotic tardigrade at pH 7
分子名称: CHLORIDE ION, Globin Protein, PROTOPORPHYRIN IX CONTAINING FE
著者Kim, J, Fukuda, Y, Inoue, T.
登録日2018-04-02
公開日2019-01-02
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Crystal structure of Kumaglobin: a hexacoordinated heme protein from an anhydrobiotic tardigrade, Ramazzottius varieornatus.
FEBS J., 286, 2019
5Z4G
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BU of 5z4g by Molmil
Crystal structure of secretory abundant heat soluble protein 4 from Ramazzottius varieornatus
分子名称: SAHS4, TETRAETHYLENE GLYCOL, TRIETHYLENE GLYCOL, ...
著者Fukuda, Y, Inoue, T.
登録日2018-01-11
公開日2018-04-11
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Crystal structure of secretory abundant heat soluble protein 4 from one of the toughest "water bears" micro-animals Ramazzottius Varieornatus
Protein Sci., 27, 2018
3AGV
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Crystal structure of a human IgG-aptamer complex
分子名称: 5'-R(*GP*GP*AP*GP*GP*(UFT)P*GP*(CFZ)P*(UFT)P*(CFZ)P*(CFZ)P*GP*AP*AP*A*GP*GP*AP*AP*(CFZ)P*(UFT)P*(CFZ)P*(CFZ)P*A)-3', CALCIUM ION, Ig gamma-1 chain C region, ...
著者Nomura, Y, Sugiyama, S, Sakamoto, T, Miyakawa, S, Adachi, H, Takano, K, Murakami, S, Inoue, T, Mori, Y, Nakamura, Y, Matsumura, H.
登録日2010-04-08
公開日2010-11-10
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Conformational plasticity of RNA for target recognition as revealed by the 2.15 A crystal structure of a human IgG-aptamer complex
Nucleic Acids Res., 38, 2010
7DF2
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BU of 7df2 by Molmil
Crystal structure of a C2 domain protein from Ramazzottius varieornatus
分子名称: C2 domain protein, CALCIUM ION, beta-D-glucopyranose-(1-1)-alpha-D-glucopyranose
著者Fukuda, Y, Inoue, T.
登録日2020-11-06
公開日2020-12-09
最終更新日2021-03-03
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structural insights into a C2 domain protein specifically found in tardigrades.
Protein Sci., 30, 2021
1IR2
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BU of 1ir2 by Molmil
Crystal Structure of Activated Ribulose-1,5-bisphosphate Carboxylase/oxygenase (Rubisco) from Green alga, Chlamydomonas reinhardtii Complexed with 2-Carboxyarabinitol-1,5-bisphosphate (2-CABP)
分子名称: 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE, GLYCEROL, Large subunit of Rubisco, ...
著者Mizohata, E, Matsumura, H, Okano, Y, Kumei, M, Takuma, H, Onodera, J, Kato, K, Shibata, N, Inoue, T, Yokota, A, Kai, Y.
登録日2001-09-03
公開日2002-03-20
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.84 Å)
主引用文献Crystal structure of activated ribulose-1,5-bisphosphate carboxylase/oxygenase from green alga Chlamydomonas reinhardtii complexed with 2-carboxyarabinitol-1,5-bisphosphate.
J.Mol.Biol., 316, 2002
2ZA1
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Crystal Structure of orotidine 5'-monophosphate decarboxylase complexed with orotidine 5'-monophosphate from P.falciparum
分子名称: OROTIDINE-5'-MONOPHOSPHATE, Orotidine 5'-phosphate decarboxylase
著者Tokuoka, K, Inoue, T.
登録日2007-09-26
公開日2007-12-04
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献Structural Basis for the Decarboxylation of Orotidine 5'-Monophosphate (OMP) by Plasmodium Falciparum OMP Decarboxylase
J.BIOCHEM.(TOKYO), 143, 2008
2ZA3
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BU of 2za3 by Molmil
Crystal Structure of orotidine 5'-monophosphate decarboxylase complexed with uridine 5'-monophosphate from P.falciparum
分子名称: Orotidine 5'-phosphate decarboxylase, URIDINE-5'-MONOPHOSPHATE
著者Tokuoka, K, Inoue, T.
登録日2007-09-26
公開日2007-12-04
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献Structural Basis for the Decarboxylation of Orotidine 5'-Monophosphate (OMP) by Plasmodium Falciparum OMP Decarboxylase
J.Biochem.(Tokyo), 143, 2008

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