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8IOV
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Structure of SARS-CoV-2 XBB.1 spike RBD in complex with ACE2
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, ...
著者Anraku, Y, Kita, S, Yajima, H, Sasaki, J, Sasaki-Tabata, K, Maenaka, K, Hashiguchi, T.
登録日2023-03-13
公開日2023-05-24
最終更新日2023-07-19
実験手法ELECTRON MICROSCOPY (3.29 Å)
主引用文献Virological characteristics of the SARS-CoV-2 XBB variant derived from recombination of two Omicron subvariants.
Nat Commun, 14, 2023
8IOT
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BU of 8iot by Molmil
Structure of the SARS-CoV-2 XBB.1 spike glycoprotein (closed-2 state)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
著者Anraku, Y, Kita, S, Yajima, H, Sasaki, J, Sasaki-Tabata, K, Maenaka, K, Hashiguchi, T.
登録日2023-03-13
公開日2023-05-24
最終更新日2024-10-30
実験手法ELECTRON MICROSCOPY (2.51 Å)
主引用文献Virological characteristics of the SARS-CoV-2 XBB variant derived from recombination of two Omicron subvariants.
Nat Commun, 14, 2023
7YJO
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Cryo-EM structure of the monomeric atSPT-ORM1 (LCB2a-deltaN5) complex
分子名称: Long chain base biosynthesis protein 2a, N-[(2S,3R,4E)-1,3-dihydroxyoctadec-4-en-2-yl]tetracosanamide, ORMDL family protein, ...
著者Xie, T, Liu, P, Gong, X.
登録日2022-07-20
公開日2023-04-05
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献Mechanism of sphingolipid homeostasis revealed by structural analysis of Arabidopsis SPT-ORM1 complex.
Sci Adv, 9, 2023
8IOU
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BU of 8iou by Molmil
Structure of SARS-CoV-2 XBB.1 spike glycoprotein in complex with ACE2 (1-up state)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, ...
著者Anraku, Y, Kita, S, Yajima, H, Sasaki, J, Sasaki-Tabata, K, Maenaka, K, Hashiguchi, T.
登録日2023-03-13
公開日2023-05-24
最終更新日2024-10-23
実験手法ELECTRON MICROSCOPY (3.18 Å)
主引用文献Virological characteristics of the SARS-CoV-2 XBB variant derived from recombination of two Omicron subvariants.
Nat Commun, 14, 2023
7YJN
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Cryo-EM structure of the monomeric atSPT-ORM1 (ORM1-N17A) complex
分子名称: Long chain base biosynthesis protein 1, Long chain base biosynthesis protein 2a, ORMDL family protein, ...
著者Xie, T, Liu, P, Gong, X.
登録日2022-07-20
公開日2023-04-05
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Mechanism of sphingolipid homeostasis revealed by structural analysis of Arabidopsis SPT-ORM1 complex.
Sci Adv, 9, 2023
7C6P
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BU of 7c6p by Molmil
Bromodomain-containing 4 BD2 in complex with 3',4',7,8- Tetrahydroxyflavonoid
分子名称: 2-[3,4-bis(oxidanyl)phenyl]-7,8-bis(oxidanyl)chromen-4-one, Bromodomain-containing protein 4
著者Li, J, Yu, K, Luo, Y, Zheng, W, Liang, W, Zhu, J.
登録日2020-05-22
公開日2021-05-12
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.73 Å)
主引用文献Discovery of the natural product 3',4',7,8-tetrahydroxyflavone as a novel and potent selective BRD4 bromodomain 2 inhibitor.
J Enzyme Inhib Med Chem, 36, 2021
7C2Z
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Bromodomain-containing 4 BD1 in complex with 3',4',7,8-Tetrahydroxyflavone
分子名称: 2-[3,4-bis(oxidanyl)phenyl]-7,8-bis(oxidanyl)chromen-4-one, Bromodomain-containing protein 4, FORMIC ACID
著者Li, J, Zhu, J.
登録日2020-05-10
公開日2021-05-12
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Discovery of the natural product 3',4',7,8-tetrahydroxyflavone as a novel and potent selective BRD4 bromodomain 2 inhibitor.
J Enzyme Inhib Med Chem, 36, 2021
1CE9
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BU of 1ce9 by Molmil
HELIX CAPPING IN THE GCN4 LEUCINE ZIPPER
分子名称: PROTEIN (GCN4-PMSE)
著者Lu, M, Shu, W, Ji, H, Spek, E, Wang, L.-Y, Kallenbach, N.R.
登録日1999-03-18
公開日1999-03-25
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Helix capping in the GCN4 leucine zipper.
J.Mol.Biol., 288, 1999
3B8Q
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BU of 3b8q by Molmil
Crystal structure of the VEGFR2 kinase domain in complex with a naphthamide inhibitor
分子名称: N-(4-chlorophenyl)-6-[(6,7-dimethoxyquinolin-4-yl)oxy]naphthalene-1-carboxamide, Vascular endothelial growth factor receptor 2
著者Whittington, D.A, Long, A.M, Gu, Y, Zhao, H.
登録日2007-11-01
公開日2008-04-01
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献Naphthamides as Novel and Potent Vascular Endothelial Growth Factor Receptor Tyrosine Kinase Inhibitors: Design, Synthesis and Evaluation
J.Med.Chem., 51, 2008
7DIY
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BU of 7diy by Molmil
Crystal structure of SARS-CoV-2 nsp10 bound to nsp14-exoribonuclease domain
分子名称: MAGNESIUM ION, ZINC ION, nsp10 protein, ...
著者Lin, S, Chen, H, Chen, Z.M, Yang, F.L, Ye, F, Zheng, Y, Yang, J, Lin, X, Sun, H.L, Wang, L.L, Wen, A, Cao, Y, Lu, G.W.
登録日2020-11-19
公開日2021-05-19
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.693 Å)
主引用文献Crystal structure of SARS-CoV-2 nsp10 bound to nsp14-ExoN domain reveals an exoribonuclease with both structural and functional integrity.
Nucleic Acids Res., 49, 2021
8VJB
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BU of 8vjb by Molmil
Cryo-EM structure of short form insulin receptor (IR-A) with four IGF2 bound, symmetric conformation.
分子名称: Insulin-like growth factor II, Isoform Short of Insulin receptor
著者An, W, Hall, C, Li, J, Huang, A, Wu, J, Park, J, Bai, X.C, Choi, E.
登録日2024-01-06
公開日2024-03-27
最終更新日2024-04-03
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Activation of the insulin receptor by insulin-like growth factor 2.
Nat Commun, 15, 2024
8VJC
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BU of 8vjc by Molmil
Cryo-EM structure of short form insulin receptor (IR-A) with three IGF2 bound, asymmetric conformation.
分子名称: Insulin-like growth factor II, Isoform Short of Insulin receptor
著者An, W, Hall, C, Li, J, Huang, A, Wu, J, Park, J, Bai, X.C, Choi, E.
登録日2024-01-06
公開日2024-03-27
最終更新日2024-10-23
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Activation of the insulin receptor by insulin-like growth factor 2.
Nat Commun, 15, 2024
8VSD
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BU of 8vsd by Molmil
avb8/L-TGF-b1/GARP
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
著者Jin, M, Cheng, Y, Nishimura, S.L.
登録日2024-01-23
公開日2024-09-11
最終更新日2024-10-02
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Dynamic allostery drives autocrine and paracrine TGF-beta signaling.
Cell, 2024
8VS6
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BU of 8vs6 by Molmil
L-TGF-b3/avb8
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
著者Jin, M, Cheng, Y, Nishimura, S.L.
登録日2024-01-23
公開日2024-09-11
最終更新日2024-10-23
実験手法ELECTRON MICROSCOPY (2.73 Å)
主引用文献Dynamic allostery drives autocrine and paracrine TGF-beta signaling.
Cell, 2024
8VSC
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L-TGF-b1/GARP
分子名称: Transforming growth factor beta activator LRRC32, Transforming growth factor beta-1 proprotein
著者Jin, M, Cheng, Y, Nishimura, S.L.
登録日2024-01-23
公開日2024-09-11
最終更新日2024-10-16
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Dynamic allostery drives autocrine and paracrine TGF-beta signaling.
Cell, 2024
8VSB
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BU of 8vsb by Molmil
L-TGF-b3/GARP
分子名称: Transforming growth factor beta activator LRRC32, Transforming growth factor beta-3 proprotein
著者Jin, M, Cheng, Y, Nishimura, S.L.
登録日2024-01-23
公開日2024-09-11
最終更新日2024-10-02
実験手法ELECTRON MICROSCOPY (2.93 Å)
主引用文献Dynamic allostery drives autocrine and paracrine TGF-beta signaling.
Cell, 2024
7DT1
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BU of 7dt1 by Molmil
The structure of Lactobacillus fermentum 4,6-alpha-Glucanotransferase
分子名称: 1,2-ETHANEDIOL, CALCIUM ION, DI(HYDROXYETHYL)ETHER, ...
著者Yang, W.K, Yong, Y.H, Wu, L, Chen, S, Zhou, J.H, Wu, J.
登録日2021-01-04
公開日2022-01-12
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.43002272 Å)
主引用文献Characterization of a new 4,6-alpha-glucanotransferase from Limosilactobacillus fermentum NCC 3057 with ability of synthesizing low molecular mass isomalto-/maltopolysaccharide
Food Biosci, 46, 2022
8W4U
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BU of 8w4u by Molmil
human KCNQ2-CaM in complex with PIP2 and HN37
分子名称: Calmodulin-1, Potassium voltage-gated channel subfamily KQT member 2, [(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate, ...
著者Ma, D, Li, X, Guo, J.
登録日2023-08-25
公開日2023-12-13
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Ligand activation mechanisms of human KCNQ2 channel.
Nat Commun, 14, 2023
8UWL
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BU of 8uwl by Molmil
5-HT2AR bound to Lisuride in complex with a mini-Gq protein and an active-state stabilizing single-chain variable fragment (scFv16) obtained by cryo-electron microscopy (cryoEM)
分子名称: 5-hydroxytryptamine receptor 2A, G protein subunit q (Gi2-mini-Gq chimera), Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ...
著者Barros-Alvarez, X, Kim, K, Panova, O, Roth, B.L, Skiniotis, G.
登録日2023-11-06
公開日2024-05-29
最終更新日2024-07-03
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献AlphaFold2 structures guide prospective ligand discovery.
Science, 384, 2024
5XSY
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BU of 5xsy by Molmil
Structure of the Nav1.4-beta1 complex from electric eel
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Sodium channel protein, Voltage-gated sodium channel beta subunit 1, ...
著者Yan, Z, Zhou, Q, Wu, J.P, Yan, N.
登録日2017-06-15
公開日2017-08-09
最終更新日2024-10-30
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献Structure of the Nav1.4-beta 1 Complex from Electric Eel.
Cell, 170, 2017
5XQX
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BU of 5xqx by Molmil
Human CDK8-CYCC in complex with compound 4: N-methyl-4-(4-pyridyl)-1H-pyrrole-2-carboxamide
分子名称: Cyclin-C, Cyclin-dependent kinase 8, GLYCEROL, ...
著者Zhou, Z, Xu, Z.H.
登録日2017-06-07
公開日2017-08-09
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Discovery of potent and selective CDK8 inhibitors through FBDD approach
Bioorg. Med. Chem. Lett., 27, 2017
5XWV
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Substrate-bound Structure of a Ketoreductase from the Second Module of the amphotericin Polyketide Synthases
分子名称: AmphB, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, S-[2-[3-[[(2R)-3,3-dimethyl-2,4-bis(oxidanyl)butanoyl]amino]propanoylamino]ethyl] (2R)-2-methyl-3-oxidanylidene-pentanethioate
著者Liu, C, Zheng, J.
登録日2017-06-30
公開日2018-06-06
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Substrate-bound structures of a ketoreductase from amphotericin modular polyketide synthase.
J. Struct. Biol., 203, 2018
5YAT
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BU of 5yat by Molmil
Crystal structure of mitochondrial alcohol dehydrogenase isozyme III from Komagataella phaffii GS115
分子名称: GLYCEROL, ISOPROPYL ALCOHOL, Mitochondrial alcohol dehydrogenase isozyme III, ...
著者Zhang, H.D, Li, Q.
登録日2017-09-01
公開日2018-03-21
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.745 Å)
主引用文献Investigation of structure and function of mitochondrial alcohol dehydrogenase isozyme III from Komagataella phaffii GS115.
Biochim. Biophys. Acta, 1862, 2018
5YDR
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BU of 5ydr by Molmil
Structure of DNMT1 RFTS domain in complex with ubiquitin
分子名称: DNA (cytosine-5)-methyltransferase 1, PHOSPHATE ION, Polyubiquitin-B, ...
著者Qian, C.
登録日2017-09-14
公開日2018-02-21
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.003 Å)
主引用文献Structural and mechanistic insights into UHRF1-mediated DNMT1 activation in the maintenance DNA methylation.
Nucleic Acids Res., 46, 2018
5XYN
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The crystal structure of Csm2-Psy3-Shu1-Shu2 complex from budding yeast
分子名称: Chromosome segregation in meiosis protein 2, Platinum sensitivity protein 3, Suppressor of HU sensitivity involved in recombination protein 1, ...
著者Zhang, S, Zhang, T, Ding, J.
登録日2017-07-09
公開日2017-11-08
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Structural basis for the functional role of the Shu complex in homologous recombination.
Nucleic Acids Res., 45, 2017

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