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6IGI
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BU of 6igi by Molmil
Crystal structure of FT condition 2
分子名称: 1,2-ETHANEDIOL, Protein FLOWERING LOCUS T
著者Watanabe, S, Nakamura, Y, Kanehara, K, Inaba, K.
登録日2018-09-25
公開日2019-12-25
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.33 Å)
主引用文献High-Resolution Crystal Structure of Arabidopsis FLOWERING LOCUS T Illuminates Its Phospholipid-Binding Site in Flowering.
Iscience, 21, 2019
6IGH
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BU of 6igh by Molmil
Crystal structure of FT condition3
分子名称: 1,2-ETHANEDIOL, Protein FLOWERING LOCUS T
著者Watanabe, S, Nakamura, Y, Kanehara, K, Inaba, K.
登録日2018-09-25
公開日2019-12-25
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.01 Å)
主引用文献High-Resolution Crystal Structure of Arabidopsis FLOWERING LOCUS T Illuminates Its Phospholipid-Binding Site in Flowering.
Iscience, 21, 2019
6IGG
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BU of 6igg by Molmil
Crystal structure of FT condition 1
分子名称: 1,2-ETHANEDIOL, Protein FLOWERING LOCUS T
著者Watanabe, S, Nakamura, Y, Kanehara, K, Inaba, K.
登録日2018-09-25
公開日2019-12-25
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1 Å)
主引用文献High-Resolution Crystal Structure of Arabidopsis FLOWERING LOCUS T Illuminates Its Phospholipid-Binding Site in Flowering.
Iscience, 21, 2019
6IGJ
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BU of 6igj by Molmil
Crystal structure of FT condition 4
分子名称: MAGNESIUM ION, Protein FLOWERING LOCUS T
著者Watanabe, S, Nakamura, Y, Kanehara, K, Inaba, K.
登録日2018-09-25
公開日2019-12-25
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.501 Å)
主引用文献High-Resolution Crystal Structure of Arabidopsis FLOWERING LOCUS T Illuminates Its Phospholipid-Binding Site in Flowering.
Iscience, 21, 2019
7WWX
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BU of 7wwx by Molmil
Crystal structure of Herbaspirillum huttiense L-arabinose 1-dehydrogenase (NAD bound form)
分子名称: DI(HYDROXYETHYL)ETHER, NAD(P)-dependent dehydrogenase (Short-subunit alcohol dehydrogenase family), NICOTINAMIDE-ADENINE-DINUCLEOTIDE
著者Matsubara, R, Yoshiwara, K, Watanabe, Y, Watanabe, S.
登録日2022-02-14
公開日2022-03-30
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.36 Å)
主引用文献Crystal structure of L-arabinose 1-dehydrogenase as a short-chain reductase/dehydrogenase protein.
Biochem.Biophys.Res.Commun., 604, 2022
4YNC
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BU of 4ync by Molmil
OYE1 W116A COMPLEXED WITH (Z)-METHYL-3-CYANO-3-PHENYLACRYLATE IN A NON PRODUCTIVE BINDING MODE
分子名称: CHLORIDE ION, FLAVIN MONONUCLEOTIDE, NADPH dehydrogenase 1, ...
著者Santangelo, S, Brenna, E, Stewart, J.D, Powell III, R.W.
登録日2015-03-09
公開日2016-01-20
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.498 Å)
主引用文献Opposite Enantioselectivity in the Bioreduction of (Z)-beta-Aryl-beta-cyanoacrylates Mediated by the Tryptophan 116 Mutants of Old Yellow Enzyme 1: Synthetic Approach to (R)- and (S)-beta-Aryl-gamma-lactams
Adv.Synth.Catal., 357, 2015
4YIL
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BU of 4yil by Molmil
OYE1 W116A COMPLEXED WITH (Z)-METHYL 3-CYANO-3-(4-FLUOROPHENYL)ACRYLATE IN A NON PRODUCTIVE BINDING MODE
分子名称: FLAVIN MONONUCLEOTIDE, MAGNESIUM ION, NADPH dehydrogenase 1, ...
著者Santangelo, S, Brenna, E, Stewart, J.D, Powell III, R.W.
登録日2015-03-02
公開日2016-01-20
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.461 Å)
主引用文献Opposite Enantioselectivity in the Bioreduction of (Z)-beta-Aryl-beta-cyanoacrylates Mediated by the Tryptophan 116 Mutants of Old Yellow Enzyme 1: Synthetic Approach to (R)- and (S)-beta-Aryl-gamma-lactams
Adv.Synth.Catal., 357, 2015
8KDX
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BU of 8kdx by Molmil
Tau-S214 Phosphorylation Inhibits Fyn Kinase Interaction and Increases the Decay Time of NMDAR-mediated Current
分子名称: Microtubule-associated protein tau, Tyrosine-protein kinase Fyn
著者Padavattan, S, Jos, S.
登録日2023-08-10
公開日2024-02-28
実験手法X-RAY DIFFRACTION (1.01 Å)
主引用文献Tau-S214 Phosphorylation Inhibits Fyn Kinase Interaction and Increases the Decay Time of NMDAR-mediated Current.
J.Mol.Biol., 436, 2024
2W27
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BU of 2w27 by Molmil
CRYSTAL STRUCTURE OF THE BACILLUS SUBTILIS YKUI PROTEIN, WITH AN EAL DOMAIN, IN COMPLEX WITH SUBSTRATE C-DI-GMP AND CALCIUM
分子名称: CALCIUM ION, GUANOSINE-5'-MONOPHOSPHATE, YKUI PROTEIN
著者Padavattan, S, AndERSON, W.F, Schirmer, T.
登録日2008-10-24
公開日2009-02-24
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal Structures of Ykui and its Complex with Second Messenger C-Di-Gmp Suggests Catalytic Mechanism of Phosphodiester Bond Cleavage by Eal Domains.
J.Biol.Chem., 284, 2009
7C0E
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BU of 7c0e by Molmil
Crystal structure of Azospirillum brasilense L-2-keto-3-deoxyarabonate dehydratase (2-oxobutyrate-bound form)
分子名称: L-2-keto-3-deoxyarabonate dehydratase
著者Watanabe, Y, Ono, A, Watanabe, S.
登録日2020-05-01
公開日2020-08-05
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.204 Å)
主引用文献Biochemical and Structural Characterization of l-2-Keto-3-deoxyarabinonate Dehydratase: A Unique Catalytic Mechanism in the Class I Aldolase Protein Superfamily.
Biochemistry, 59, 2020
7C0C
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BU of 7c0c by Molmil
Crystal structure of Azospirillum brasilense L-2-keto-3-deoxyarabonate dehydratase (apo form)
分子名称: L-2-keto-3-deoxyarabonate dehydratase
著者Watanabe, Y, Nobuchi, R, Watanabe, S.
登録日2020-05-01
公開日2020-08-05
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Biochemical and Structural Characterization of l-2-Keto-3-deoxyarabinonate Dehydratase: A Unique Catalytic Mechanism in the Class I Aldolase Protein Superfamily.
Biochemistry, 59, 2020
7CNR
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BU of 7cnr by Molmil
Crystal structure of Thermococcus kodakaraensis aconitase X (apo-form)
分子名称: DUF521 domain-containing protein, FE3-S4 CLUSTER, UPF0107 protein TK1248
著者Murase, Y, Watanabe, Y, Watanabe, S.
登録日2020-08-03
公開日2021-06-16
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (3.39 Å)
主引用文献Crystal structures of aconitase X enzymes from bacteria and archaea provide insights into the molecular evolution of the aconitase superfamily.
Commun Biol, 4, 2021
7CNQ
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BU of 7cnq by Molmil
Crystal structure of Agrobacterium tumefaciens aconitase X (holo-form)
分子名称: (2~{S},3~{R})-3-oxidanylpyrrolidine-2-carboxylic acid, FE2/S2 (INORGANIC) CLUSTER, cis-3-hydroxy-L-proline dehydratase
著者Murase, Y, Watanabe, Y, Watanabe, S.
登録日2020-08-03
公開日2021-06-16
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structures of aconitase X enzymes from bacteria and archaea provide insights into the molecular evolution of the aconitase superfamily.
Commun Biol, 4, 2021
7CNP
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BU of 7cnp by Molmil
Crystal structure of Agrobacterium tumefaciens aconitase X (apo-form)
分子名称: FE2/S2 (INORGANIC) CLUSTER, MAGNESIUM ION, cis-3-hydroxy-L-proline dehydratase
著者Murase, Y, Watanabe, Y, Watanabe, S.
登録日2020-08-03
公開日2021-06-16
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal structures of aconitase X enzymes from bacteria and archaea provide insights into the molecular evolution of the aconitase superfamily.
Commun Biol, 4, 2021
7CNS
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BU of 7cns by Molmil
Crystal structure of Thermococcus kodakaraensis aconitase X (holo-form)
分子名称: (3R)-3-HYDROXY-3-METHYL-5-(PHOSPHONOOXY)PENTANOIC ACID, DUF521 domain-containing protein, FE3-S4 CLUSTER, ...
著者Murase, Y, Watanabe, Y, Watanabe, S.
登録日2020-08-03
公開日2021-06-16
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.902 Å)
主引用文献Crystal structures of aconitase X enzymes from bacteria and archaea provide insights into the molecular evolution of the aconitase superfamily.
Commun Biol, 4, 2021
7D2R
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BU of 7d2r by Molmil
Crystal structure of Agrobacterium tumefaciens aconitase X mutant - S449C/C510V
分子名称: FE2/S2 (INORGANIC) CLUSTER, GLYCEROL, SODIUM ION, ...
著者Murase, Y, Watanabe, Y, Watanabe, S.
登録日2020-09-17
公開日2021-06-16
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.005 Å)
主引用文献Crystal structures of aconitase X enzymes from bacteria and archaea provide insights into the molecular evolution of the aconitase superfamily.
Commun Biol, 4, 2021
7C0D
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BU of 7c0d by Molmil
Crystal structure of Azospirillum brasilense L-2-keto-3-deoxyarabonate dehydratase (Hydroxypyruvate-bound form)
分子名称: L-2-keto-3-deoxyarabonate dehydratase
著者Watanabe, Y, Watanabe, S.
登録日2020-05-01
公開日2020-08-05
最終更新日2020-09-02
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Biochemical and Structural Characterization of l-2-Keto-3-deoxyarabinonate Dehydratase: A Unique Catalytic Mechanism in the Class I Aldolase Protein Superfamily.
Biochemistry, 59, 2020
7W47
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BU of 7w47 by Molmil
Crystal structure of the gastric proton pump complexed with tegoprazan
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, MAGNESIUM ION, Potassium-transporting ATPase alpha chain 1, ...
著者Abe, K, Tanaka, S, Morita, M, Yamagishi, T.
登録日2021-11-26
公開日2022-01-05
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structural Basis for Binding of Potassium-Competitive Acid Blockers to the Gastric Proton Pump.
J.Med.Chem., 65, 2022
7W48
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BU of 7w48 by Molmil
Crystal structure of the gastric proton pump complexed with PF-03716556
分子名称: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 2-acetamido-2-deoxy-beta-D-glucopyranose, MAGNESIUM ION, ...
著者Abe, K, Tanaka, S.
登録日2021-11-26
公開日2022-01-05
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (3.5 Å)
主引用文献Structural Basis for Binding of Potassium-Competitive Acid Blockers to the Gastric Proton Pump.
J.Med.Chem., 65, 2022
7W49
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BU of 7w49 by Molmil
Crystal structure of the gastric proton pump complexed with soraprazan
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, MAGNESIUM ION, Potassium-transporting ATPase alpha chain 1, ...
著者Abe, K, Tanaka, S.
登録日2021-11-26
公開日2022-01-05
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Structural Basis for Binding of Potassium-Competitive Acid Blockers to the Gastric Proton Pump.
J.Med.Chem., 65, 2022
7W4A
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BU of 7w4a by Molmil
Cryo-EM structure of the gastric proton pump complexed with revaprazan
分子名称: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 2-acetamido-2-deoxy-beta-D-glucopyranose, MAGNESIUM ION, ...
著者Abe, K, Tanaka, S, Morita, M, Yamagishi, T.
登録日2021-11-26
公開日2022-03-02
最終更新日2024-10-16
実験手法ELECTRON MICROSCOPY (2.76 Å)
主引用文献Structural Basis for Binding of Potassium-Competitive Acid Blockers to the Gastric Proton Pump.
J.Med.Chem., 65, 2022
5AYK
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BU of 5ayk by Molmil
Crystal structure of ERdj5 form I
分子名称: 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE, CHLORIDE ION, DnaJ homolog subfamily C member 10
著者Watanabe, S, Maegawa, K, Inaba, K.
登録日2015-08-22
公開日2017-02-15
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Highly dynamic nature of ERdj5 is essential for enhancement of the ER associated degradation
To Be Published
5AYL
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BU of 5ayl by Molmil
Crystal structure of ERdj5 form II
分子名称: 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE, DnaJ homolog subfamily C member 10
著者Watanabe, S, Maegawa, K, Inaba, K.
登録日2015-08-22
公開日2017-02-15
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Highly dynamic nature of ERdj5 is essential for enhancement of the ER associated degradation
To Be Published
5AZZ
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BU of 5azz by Molmil
Crystal structure of seleno-insulin
分子名称: Insulin A chain, Insulin B chain
著者Watanabe, S, Okumura, M, Arai, K, Takei, T, Asahina, Y, Hojo, H, Iwaoka, M, Inaba, K.
登録日2015-10-23
公開日2017-05-03
最終更新日2017-06-14
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Preparation of Selenoinsulin as a Long-Lasting Insulin Analogue.
Angew. Chem. Int. Ed. Engl., 56, 2017
5HQ2
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BU of 5hq2 by Molmil
Structural model of Set8 histone H4 Lys20 methyltransferase bound to nucleosome core particle
分子名称: DNA (149-MER), Guanine nucleotide exchange factor SRM1, Histone H2A, ...
著者Tavarekere, G, McGinty, R.K, Tan, S.
登録日2016-01-21
公開日2016-03-23
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (4.5 Å)
主引用文献Multivalent Interactions by the Set8 Histone Methyltransferase With Its Nucleosome Substrate.
J.Mol.Biol., 428, 2016

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