6YQY
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![BU of 6yqy by Molmil](/molmil-images/mine/6yqy) | Crystal structure of sTIM11noCys, a de novo designed TIM barrel | 分子名称: | de novo designed TIM barrel sTIM11noCys | 著者 | Romero-Romero, S, Wiese, G.J, Kordes, S, Shanmugaratnam, S, Fernandez-Velasco, D.A, Hocker, B. | 登録日 | 2020-04-18 | 公開日 | 2021-07-21 | 最終更新日 | 2024-01-24 | 実験手法 | X-RAY DIFFRACTION (1.876 Å) | 主引用文献 | The Stability Landscape of de novo TIM Barrels Explored by a Modular Design Approach. J.Mol.Biol., 433, 2021
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6YQX
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![BU of 6yqx by Molmil](/molmil-images/mine/6yqx) | Crystal structure of DeNovoTIM13, a de novo designed TIM barrel | 分子名称: | CHLORIDE ION, GLYCEROL, de novo designed TIM barrel DeNovoTIM13 | 著者 | Romero-Romero, S, Kordes, S, Shanmugaratnam, S, Fernandez-Velasco, D.A, Hocker, B. | 登録日 | 2020-04-18 | 公開日 | 2021-07-21 | 最終更新日 | 2024-05-01 | 実験手法 | X-RAY DIFFRACTION (1.638 Å) | 主引用文献 | The Stability Landscape of de novo TIM Barrels Explored by a Modular Design Approach. J.Mol.Biol., 433, 2021
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8H8X
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![BU of 8h8x by Molmil](/molmil-images/mine/8h8x) | Cryo-EM structure of HACE1 monomer | 分子名称: | E3 ubiquitin-protein ligase HACE1 | 著者 | Singh, S, Machida, S, Tulsian, N.K, Choong, Y.K, Ng, J, Shanker, S, Yaochen, L.D, Shi, J, Sivaraman, J. | 登録日 | 2022-10-24 | 公開日 | 2023-06-28 | 最終更新日 | 2024-01-10 | 実験手法 | ELECTRON MICROSCOPY (3.92 Å) | 主引用文献 | Structural Basis for the Enzymatic Activity of the HACE1 HECT-Type E3 Ligase Through N-Terminal Helix Dimerization. Adv Sci, 10, 2023
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8HAE
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![BU of 8hae by Molmil](/molmil-images/mine/8hae) | Cryo-EM structure of HACE1 dimer | 分子名称: | E3 ubiquitin-protein ligase HACE1 | 著者 | Singh, S, Machida, S, Tulsian, N.K, Choong, Y.K, Ng, J, Shanker, S, Yaochen, L.D, Shi, J, Sivaraman, J, Machida, S. | 登録日 | 2022-10-26 | 公開日 | 2023-06-28 | 最終更新日 | 2023-10-04 | 実験手法 | ELECTRON MICROSCOPY (4.55 Å) | 主引用文献 | Structural Basis for the Enzymatic Activity of the HACE1 HECT-Type E3 Ligase Through N-Terminal Helix Dimerization. Adv Sci, 10, 2023
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6Z2I
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![BU of 6z2i by Molmil](/molmil-images/mine/6z2i) | Crystal structure of DeNovoTIM6, a de novo designed TIM barrel | 分子名称: | de novo designed TIM barrel DeNovoTIM6 | 著者 | Romero-Romero, S, Kordes, S, Shanmugaratnam, S, Rodriguez-Romero, A, Fernandez-Velasco, D.A, Hocker, B. | 登録日 | 2020-05-15 | 公開日 | 2021-07-21 | 最終更新日 | 2024-05-01 | 実験手法 | X-RAY DIFFRACTION (2.901 Å) | 主引用文献 | The Stability Landscape of de novo TIM Barrels Explored by a Modular Design Approach. J.Mol.Biol., 433, 2021
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2WWA
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![BU of 2wwa by Molmil](/molmil-images/mine/2wwa) | Cryo-EM structure of idle yeast Ssh1 complex bound to the yeast 80S ribosome | 分子名称: | 25S RRNA, 60S RIBOSOMAL PROTEIN L17-A, 60S RIBOSOMAL PROTEIN L19, ... | 著者 | Becker, T, Mandon, E, Bhushan, S, Jarasch, A, Armache, J.P, Funes, S, Jossinet, F, Gumbart, J, Mielke, T, Berninghausen, O, Schulten, K, Westhof, E, Gilmore, R, Beckmann, R. | 登録日 | 2009-10-22 | 公開日 | 2009-12-08 | 最終更新日 | 2024-05-08 | 実験手法 | ELECTRON MICROSCOPY (8.9 Å) | 主引用文献 | Structure of Monomeric Yeast and Mammalian Sec61 Complexes Interacting with the Translating Ribosome. Science, 326, 2009
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2WW9
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![BU of 2ww9 by Molmil](/molmil-images/mine/2ww9) | Cryo-EM structure of the active yeast Ssh1 complex bound to the yeast 80S ribosome | 分子名称: | 25S RRNA, 60S RIBOSOMAL PROTEIN L17-A, 60S RIBOSOMAL PROTEIN L19, ... | 著者 | Becker, T, Mandon, E, Bhushan, S, Jarasch, A, Armache, J.P, Funes, S, Jossinet, F, Gumbart, J, Mielke, T, Berninghausen, O, Schulten, K, Westhof, E, Gilmore, R, Beckmann, R. | 登録日 | 2009-10-22 | 公開日 | 2009-12-08 | 最終更新日 | 2024-05-08 | 実験手法 | ELECTRON MICROSCOPY (8.6 Å) | 主引用文献 | Structure of Monomeric Yeast and Mammalian Sec61 Complexes Interacting with the Translating Ribosome. Science, 326, 2009
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2WWB
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![BU of 2wwb by Molmil](/molmil-images/mine/2wwb) | CRYO-EM STRUCTURE OF THE MAMMALIAN SEC61 COMPLEX BOUND TO THE ACTIVELY TRANSLATING WHEAT GERM 80S RIBOSOME | 分子名称: | 25S RRNA, 5.8S RRNA, 60S RIBOSOMAL PROTEIN L17-A, ... | 著者 | Becker, T, Mandon, E, Bhushan, S, Jarasch, A, Armache, J.P, Funes, S, Jossinet, F, Gumbart, J, Mielke, T, Berninghausen, O, Schulten, K, Westhof, E, Gilmore, R, Beckmann, R. | 登録日 | 2009-10-22 | 公開日 | 2009-12-08 | 最終更新日 | 2024-05-08 | 実験手法 | ELECTRON MICROSCOPY (6.48 Å) | 主引用文献 | Structure of Monomeric Yeast and Mammalian Sec61 Complexes Interacting with the Translating Ribosome. Science, 326, 2009
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6QGM
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![BU of 6qgm by Molmil](/molmil-images/mine/6qgm) | VirX1 apo structure | 分子名称: | VirX1 | 著者 | Gkotsi, D.S, Ludewig, H, Sharma, S.V, Unsworth, W.P, Taylor, R.J.K, McLachlan, M.M.W, Shanahan, S, Naismith, J.H, Goss, R.J.M. | 登録日 | 2019-01-11 | 公開日 | 2019-10-30 | 最終更新日 | 2024-01-24 | 実験手法 | X-RAY DIFFRACTION (2.75 Å) | 主引用文献 | A marine viral halogenase that iodinates diverse substrates. Nat.Chem., 11, 2019
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8AT0
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![BU of 8at0 by Molmil](/molmil-images/mine/8at0) | |
8ASZ
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![BU of 8asz by Molmil](/molmil-images/mine/8asz) | |
7OYY
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![BU of 7oyy by Molmil](/molmil-images/mine/7oyy) | E.coli's putrescine receptor variant PotF/D (4JDF) with mutation S247D in complex with spermidine | 分子名称: | 1,2-ETHANEDIOL, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ... | 著者 | Kroeger, P, Shanmugaratnam, S, Hocker, B. | 登録日 | 2021-06-25 | 公開日 | 2021-12-01 | 最終更新日 | 2024-01-31 | 実験手法 | X-RAY DIFFRACTION (1.36 Å) | 主引用文献 | Fine-tuning spermidine binding modes in the putrescine binding protein PotF. J.Biol.Chem., 297, 2021
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6SLD
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![BU of 6sld by Molmil](/molmil-images/mine/6sld) | Structure of the Phosphatidylcholine Binding Mutant of Yeast Sec14 Homolog Sfh1 (S175I,T177I) in Complex with Phosphatidylinositol | 分子名称: | (1R)-2-{[(S)-hydroxy{[(1S,2R,3R,4S,5S,6R)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}-1-[(octadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate, CRAL-TRIO domain-containing protein YKL091C | 著者 | Berger, J, Fitz, M, Johnen, P, Shanmugaratnam, S, Hocker, B, Stiel, A.C, Schaaf, G. | 登録日 | 2019-08-19 | 公開日 | 2020-08-19 | 最終更新日 | 2024-05-15 | 実験手法 | X-RAY DIFFRACTION (1.4 Å) | 主引用文献 | Structure of the Phosphatidylcholine Binding Mutant of Yeast Sec14 Homolog Sfh1 (S175I,T177I) in Complex with Phosphatidylinositol To Be Published
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7WF3
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![BU of 7wf3 by Molmil](/molmil-images/mine/7wf3) | Composite map of human Kv1.3 channel in apo state with beta subunits | 分子名称: | NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, POTASSIUM ION, Potassium voltage-gated channel subfamily A member 3, ... | 著者 | Tyagi, A, Ahmed, T, Jian, S, Bajaj, S, Ong, S.T, Goay, S.S.M, Zhao, Y, Vorobyov, I, Tian, C, Chandy, K.G, Bhushan, S. | 登録日 | 2021-12-25 | 公開日 | 2022-02-09 | 最終更新日 | 2022-05-25 | 実験手法 | ELECTRON MICROSCOPY (3.4 Å) | 主引用文献 | Rearrangement of a unique Kv1.3 selectivity filter conformation upon binding of a drug. Proc.Natl.Acad.Sci.USA, 119, 2022
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7WF4
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![BU of 7wf4 by Molmil](/molmil-images/mine/7wf4) | Composite map of human Kv1.3 channel in dalazatide-bound state with beta subunits | 分子名称: | NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, POTASSIUM ION, Potassium voltage-gated channel subfamily A member 3, ... | 著者 | Tyagi, A, Ahmed, T, Jian, S, Bajaj, S, Ong, S.T, Goay, S.S.M, Zhao, Y, Vorobyov, I, Tian, C, Chandy, K.G, Bhushan, S. | 登録日 | 2021-12-25 | 公開日 | 2022-02-09 | 最終更新日 | 2022-05-25 | 実験手法 | ELECTRON MICROSCOPY (3.4 Å) | 主引用文献 | Rearrangement of a unique Kv1.3 selectivity filter conformation upon binding of a drug. Proc.Natl.Acad.Sci.USA, 119, 2022
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5ZEU
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![BU of 5zeu by Molmil](/molmil-images/mine/5zeu) | M. smegmatis P/P state 30S ribosomal subunit | 分子名称: | 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... | 著者 | Mishra, S, Ahmed, T, Tyagi, A, Shi, J, Bhushan, S. | 登録日 | 2018-02-28 | 公開日 | 2018-09-26 | 最終更新日 | 2019-11-06 | 実験手法 | ELECTRON MICROSCOPY (3.7 Å) | 主引用文献 | Structures of Mycobacterium smegmatis 70S ribosomes in complex with HPF, tmRNA, and P-tRNA. Sci Rep, 8, 2018
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5ZEY
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![BU of 5zey by Molmil](/molmil-images/mine/5zey) | M. smegmatis Trans-translation state 70S ribosome | 分子名称: | A-tRNAfMet, SsrA-binding protein, tmRNA | 著者 | Mishra, S, Ahmed, T, Tyagi, A, Shi, J, Bhushan, S. | 登録日 | 2018-02-28 | 公開日 | 2018-09-26 | 最終更新日 | 2024-03-27 | 実験手法 | ELECTRON MICROSCOPY (12.5 Å) | 主引用文献 | Structures of Mycobacterium smegmatis 70S ribosomes in complex with HPF, tmRNA, and P-tRNA. Sci Rep, 8, 2018
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5ZEB
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![BU of 5zeb by Molmil](/molmil-images/mine/5zeb) | M. Smegmatis P/P state 70S ribosome structure | 分子名称: | 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... | 著者 | Mishra, S, Ahmed, T, Tyagi, A, Shi, J, Bhushan, S. | 登録日 | 2018-02-27 | 公開日 | 2018-09-26 | 実験手法 | ELECTRON MICROSCOPY (3.4 Å) | 主引用文献 | Structures of Mycobacterium smegmatis 70S ribosomes in complex with HPF, tmRNA, and P-tRNA. Sci Rep, 8, 2018
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5ZEP
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![BU of 5zep by Molmil](/molmil-images/mine/5zep) | M. smegmatis hibernating state 70S ribosome structure | 分子名称: | 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... | 著者 | Mishra, S, Ahmed, T, Tyagi, A, Shi, J, Bhushan, S. | 登録日 | 2018-02-27 | 公開日 | 2018-09-26 | 実験手法 | ELECTRON MICROSCOPY (3.4 Å) | 主引用文献 | Structures of Mycobacterium smegmatis 70S ribosomes in complex with HPF, tmRNA, and P-tRNA. Sci Rep, 8, 2018
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5ZET
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![BU of 5zet by Molmil](/molmil-images/mine/5zet) | M. smegmatis P/P state 50S ribosomal subunit | 分子名称: | 23S rRNA, 50S ribosomal protein L10, 50S ribosomal protein L11, ... | 著者 | Mishra, S, Ahmed, T, Tyagi, A, Shi, J, Bhushan, S. | 登録日 | 2018-02-28 | 公開日 | 2018-09-26 | 実験手法 | ELECTRON MICROSCOPY (3.2 Å) | 主引用文献 | Structures of Mycobacterium smegmatis 70S ribosomes in complex with HPF, tmRNA, and P-tRNA. Sci Rep, 8, 2018
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7LUP
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![BU of 7lup by Molmil](/molmil-images/mine/7lup) | Human TRiC/CCT complex with reovirus outer capsid protein sigma-3 | 分子名称: | Outer capsid protein sigma-3, T-complex protein 1 subunit alpha, T-complex protein 1 subunit beta, ... | 著者 | Knowlton, J.J, Gestaut, D, Ma, B, Taylor, G, Seven, A.B, Leitner, A, Wilson, G.J, Shanker, S, Yates, N.A, Prasad, B.V.V, Aebersold, R, Chiu, W, Frydman, J, Dermody, T.S. | 登録日 | 2021-02-22 | 公開日 | 2021-03-03 | 最終更新日 | 2024-03-06 | 実験手法 | ELECTRON MICROSCOPY (6.2 Å) | 主引用文献 | Structural and functional dissection of reovirus capsid folding and assembly by the prefoldin-TRiC/CCT chaperone network. Proc.Natl.Acad.Sci.USA, 118, 2021
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7LUM
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![BU of 7lum by Molmil](/molmil-images/mine/7lum) | Human TRiC in ATP/AlFx closed state | 分子名称: | T-complex protein 1 subunit alpha, T-complex protein 1 subunit beta, T-complex protein 1 subunit delta, ... | 著者 | Knowlton, J.J, Gestaut, D, Ma, B, Taylor, G, Seven, A.B, Leitner, A, Wilson, G.J, Shanker, S, Yates, N.A, Prasad, B.V.V, Aebersold, R, Chiu, W, Frydman, J, Dermody, T.S. | 登録日 | 2021-02-22 | 公開日 | 2021-03-03 | 最終更新日 | 2024-03-06 | 実験手法 | ELECTRON MICROSCOPY (4.5 Å) | 主引用文献 | Structural and functional dissection of reovirus capsid folding and assembly by the prefoldin-TRiC/CCT chaperone network. Proc.Natl.Acad.Sci.USA, 118, 2021
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8R8N
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![BU of 8r8n by Molmil](/molmil-images/mine/8r8n) | |
8R8O
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![BU of 8r8o by Molmil](/molmil-images/mine/8r8o) | Hallucinated de novo TIM barrel with three helical extensions - HalluTIM3-1 | 分子名称: | ACETATE ION, CHLORIDE ION, GLYCEROL, ... | 著者 | Beck, J, Shanmugaratnam, S, Hocker, B. | 登録日 | 2023-11-29 | 公開日 | 2024-05-22 | 実験手法 | X-RAY DIFFRACTION (2.15 Å) | 主引用文献 | Diversifying de novo TIM barrels by hallucination. Protein Sci., 33, 2024
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1T61
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![BU of 1t61 by Molmil](/molmil-images/mine/1t61) | crystal structure of collagen IV NC1 domain from placenta basement membrane | 分子名称: | CALCIUM ION, CHLORIDE ION, GLYCEROL, ... | 著者 | Vanacore, R.M, Shanmugasundararaj, S, Friedman, D.B, Bondar, O, Hudson, B.G, Sundaramoorthy, M. | 登録日 | 2004-05-05 | 公開日 | 2004-09-21 | 最終更新日 | 2011-07-13 | 実験手法 | X-RAY DIFFRACTION (1.5 Å) | 主引用文献 | The alpha1.alpha2 network of collagen IV. Reinforced stabilization of the noncollagenous domain-1 by noncovalent forces and the absence of Met-Lys cross-links J.Biol.Chem., 279, 2004
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