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6IUE
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BU of 6iue by Molmil
DNA helical wire containing Hg(II)
分子名称: DNA (5'-D(*TP*TP*TP*GP*C)-3'), MERCURY (II) ION
著者Ono, A, Kanazawa, H, Ito, H, Goto, M, Nakamura, K, Saneyoshi, H, Kondo, J.
登録日2018-11-28
公開日2019-10-16
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.901 Å)
主引用文献A Novel DNA Helical Wire Containing HgII-Mediated T:T and T:G Pairs.
Angew.Chem.Int.Ed.Engl., 58, 2019
7CT4
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BU of 7ct4 by Molmil
Crystal structure of D-amino acid oxidase from Rasamsonia emersonii strain YA
分子名称: D-amino acid oxidase, FLAVIN-ADENINE DINUCLEOTIDE
著者Shimekake, Y, Hirato, Y, Okazaki, S, Funabashi, R, Goto, M, Furuichi, T, Suzuki, H, Takahashi, S.
登録日2020-08-18
公開日2020-11-11
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献X-ray structure analysis of a unique D-amino-acid oxidase from the thermophilic fungus Rasamsonia emersonii strain YA.
Acta Crystallogr.,Sect.F, 76, 2020
7F4C
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BU of 7f4c by Molmil
The crystal structure of the immature holo-enzyme of homoserine dehydrogenase complexed with NADP and 1,4-butandiol from the hyperthermophilic archaeon Sulfurisphaera tokodaii.
分子名称: 1,4-BUTANEDIOL, Homoserine dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
著者Ogata, K, Kaneko, R, Kubota, T, Watanabe, K, Kurihara, E, Oshima, T, Yoshimune, K, Goto, M.
登録日2021-06-18
公開日2022-06-22
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Conformational changes in the catalytic region are responsible for heat-induced activation of hyperthermophilic homoserine dehydrogenase.
Commun Biol, 5, 2022
7F4B
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The crystal structure of the immature apo-enzyme of homoserine dehydrogenase from the hyperthermophilic archaeon Sulfurisphaera tokodaii.
分子名称: MAGNESIUM ION, homoserine dehydrogenase
著者Kurihara, E, Kubota, T, Watanabe, K, Ogata, K, Kaneko, R, Oshima, T, Yoshimune, K, Goto, M.
登録日2021-06-18
公開日2022-06-22
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Conformational changes in the catalytic region are responsible for heat-induced activation of hyperthermophilic homoserine dehydrogenase.
Commun Biol, 5, 2022
1IQ0
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BU of 1iq0 by Molmil
THERMUS THERMOPHILUS ARGINYL-TRNA SYNTHETASE
分子名称: ARGINYL-TRNA SYNTHETASE
著者Shimada, A, Nureki, O, Goto, M, Takahashi, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2001-05-24
公開日2001-11-28
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural and mutational studies of the recognition of the arginine tRNA-specific major identity element, A20, by arginyl-tRNA synthetase.
Proc.Natl.Acad.Sci.USA, 98, 2001
7Y4K
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BU of 7y4k by Molmil
Crystal structure of Ricin A chain bound with N2-(2-amino-4-oxo-3,4-dihydropteridine-7-carbonyl)glycyl-L-phenylalanyl-N6-((benzyloxy)carbonyl)-L-ornitine
分子名称: (2S)-2-[[(2S)-2-[2-[(2-azanyl-4-oxidanylidene-3H-pteridin-7-yl)carbonylamino]ethanoylamino]-3-phenyl-propanoyl]amino]-5-(phenylmethoxycarbonylamino)pentanoic acid, Ricin A chain, SULFATE ION
著者Katakura, S, Goto, M, Ohba, T, Kawata, R, Nagatsu, K, Higashi, S, Matsumoto, K, Kurisu, K, Ohtsuka, K, Saito, R.
登録日2022-06-15
公開日2022-11-16
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Pterin-based small molecule inhibitor capable of binding to the secondary pocket in the active site of ricin-toxin A chain.
Plos One, 17, 2022
7Y4M
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BU of 7y4m by Molmil
Crystal structure of Ricin A chain bound with N2-(2-amino-4-oxo-3,4-dihydropteridine-7-carbonyl)glycyl-L-phenylalanyl-N6-((benzyloxy)carbonyl)-L-lysine
分子名称: (2S)-2-[[(2S)-2-[2-[(2-azanyl-4-oxidanylidene-3H-pteridin-7-yl)carbonylamino]ethanoylamino]-3-phenyl-propanoyl]amino]-6-(phenylmethoxycarbonylamino)hexanoic acid, Ricin A chain, SULFATE ION
著者Katakura, S, Goto, M, Ohba, T, Kawata, R, Nagatsu, K, Higashi, S, Matsumoto, K, Kurisu, K, Ohtsuka, K, Saito, R.
登録日2022-06-15
公開日2022-11-16
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Pterin-based small molecule inhibitor capable of binding to the secondary pocket in the active site of ricin-toxin A chain.
Plos One, 17, 2022
1VGN
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BU of 1vgn by Molmil
Structure-based design of the irreversible inhibitors to metallo--lactamase (IMP-1)
分子名称: 3-OXO-3-[(3-OXOPROPYL)SULFANYL]PROPANE-1-THIOLATE, ACETIC ACID, Beta-lactamase IMP-1, ...
著者Kurosaki, H, Yamaguchi, Y, Higashi, T, Soga, K, Matsueda, S, Misumi, S, Yamagata, Y, Arakawa, Y, Goto, M.
登録日2004-04-27
公開日2005-06-21
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.63 Å)
主引用文献Irreversible Inhibition of Metallo-beta-lactamase (IMP-1) by 3-(3-Mercaptopropionylsulfanyl)propionic Acid Pentafluorophenyl Ester
Angew.Chem.Int.Ed.Engl., 44, 2005
2YRR
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hypothetical alanine aminotransferase (TTH0173) from Thermus thermophilus HB8
分子名称: Aminotransferase, class V, PYRIDOXAL-5'-PHOSPHATE
著者Miyahara, I, Matsumura, M, Goto, M, Omi, R, Hirotsu, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-04-02
公開日2008-04-15
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.86 Å)
主引用文献hypothetical alanine aminotransferase (TTH0173) from Thermus thermophilus HB8
To be Published
2YRI
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BU of 2yri by Molmil
Crystal structure of alanine-pyruvate aminotransferase with 2-methylserine
分子名称: (S,E)-3-HYDROXY-2-((3-HYDROXY-2-METHYL-5-(PHOSPHONOOXYMETHYL)PYRIDIN-4-YL)METHYLENEAMINO)-2-METHYLPROPANOIC ACID, 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE, Aminotransferase, ...
著者Miyahara, I, Matsumura, M, Goto, M, Omi, R, Hirotsu, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-04-02
公開日2008-04-15
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献hypothetical alanine aminotransferase (TTHA0173) from Thermus thermophilus HB8
To be Published
2DOU
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probable N-succinyldiaminopimelate aminotransferase (TTHA0342) from Thermus thermophilus HB8
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, SULFATE ION, probable N-succinyldiaminopimelate aminotransferase
著者Omi, R, Goto, M, Miyahara, I, Hirotsu, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-05-03
公開日2006-11-03
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献probable N-succinyldiaminopimelate aminotransferase (TTHA0342) from Thermus thermophilus HB8
To be published
2EJV
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BU of 2ejv by Molmil
Crystal structure of threonine 3-dehydrogenase complexed with NAD+
分子名称: L-threonine 3-dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ZINC ION
著者Omi, R, Yao, T, Goto, M, Miyahara, I, Hirotsu, K.
登録日2007-03-20
公開日2008-03-25
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献Crystal structure of threonine 3-dehydrogenase
To be Published
2DQ4
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BU of 2dq4 by Molmil
Crystal structure of threonine 3-dehydrogenase
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, L-threonine 3-dehydrogenase, ZINC ION
著者Omi, R, Yao, T, Goto, M, Miyahara, I, Hirotsu, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-05-19
公開日2007-06-12
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure of threonine 3-dehydrogenase
To be Published
2EJW
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BU of 2ejw by Molmil
Homoserine Dehydrogenase from Thermus thermophilus HB8
分子名称: GLYCEROL, Homoserine dehydrogenase, MAGNESIUM ION, ...
著者Omi, R, Goto, M, Miyahara, I, Hirotsu, K.
登録日2007-03-21
公開日2008-02-12
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal Structure of Homoserine Dehydrogenase from Thermus thermophilus HB8
To be Published
1VC3
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BU of 1vc3 by Molmil
Crystal Structure of L-Aspartate-alpha-Decarboxylase
分子名称: L-Aspartate-alpha-Decarboxylase heavy chain, L-Aspartate-alpha-Decarboxylase light chain
著者Nakajima, O, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-03-04
公開日2005-06-28
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Crystal Structure of L-Aspartate-alpha-Decarboxylase
TO BE PUBLISHED
5X9O
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BU of 5x9o by Molmil
Crystal structure of the BCL6 BTB domain in complex with Compound 1a
分子名称: 1,2-ETHANEDIOL, 5-[(2-chloranyl-4-nitro-phenyl)amino]-1,3-dihydrobenzimidazol-2-one, B-cell lymphoma 6 protein, ...
著者Sogabe, S, Ida, K, Lane, W, Snell, G.
登録日2017-03-08
公開日2017-08-16
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.58 Å)
主引用文献Discovery of a novel B-cell lymphoma 6 (BCL6)-corepressor interaction inhibitor by utilizing structure-based drug design
Bioorg. Med. Chem., 25, 2017
6AHS
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BU of 6ahs by Molmil
Mouse Kallikrein 7 in complex with imidazolinylindole derivative
分子名称: 1-[(2-chlorophenyl)sulfonyl]-5-methyl-3-[(4R)-2-methyl-4,5-dihydro-1H-imidazol-4-yl]-1H-indole, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHLORIDE ION, ...
著者Sugawara, H.
登録日2018-08-20
公開日2019-01-02
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Discovery and structure-activity relationship of imidazolinylindole derivatives as kallikrein 7 inhibitors.
Bioorg. Med. Chem. Lett., 29, 2019
6ANL
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Structure-based Design, Synthesis, and Biological Evaluation of Imidazo[1,2-b]pyridazine-based p38 MAP Kinase Inhibitors
分子名称: Mitogen-activated protein kinase 14, TAK-715
著者Snell, G.P, Okada, K, Bragstad, K, Sang, B.-C.
登録日2017-08-14
公開日2018-01-17
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structure-based design, synthesis, and biological evaluation of imidazo[1,2-b]pyridazine-based p38 MAP kinase inhibitors.
Bioorg. Med. Chem., 26, 2018
8I1G
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Crystal structure of human MTH1(G2K mutant) in complex with 2-oxo-dATP at pH 9.1
分子名称: 7,8-dihydro-8-oxoguanine triphosphatase, GLYCEROL, SODIUM ION, ...
著者Nakamura, T, Yamagata, Y.
登録日2023-01-13
公開日2023-03-22
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.18 Å)
主引用文献Protonation states of Asp residues in the human Nudix hydrolase MTH1 contribute to its broad substrate recognition.
Febs Lett., 597, 2023
8I1H
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BU of 8i1h by Molmil
Crystal structure of human MTH1(G2K mutant) in complex with 2-oxo-dATP at pH 9.7
分子名称: 7,8-dihydro-8-oxoguanine triphosphatase, GLYCEROL, SODIUM ION
著者Nakamura, T, Yamagata, Y.
登録日2023-01-13
公開日2023-03-22
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.18 Å)
主引用文献Protonation states of Asp residues in the human Nudix hydrolase MTH1 contribute to its broad substrate recognition.
Febs Lett., 597, 2023
8I18
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Crystal structure of human MTH1(G2K mutant) in complex with 8-oxo-dGTP at pH 7.7
分子名称: 7,8-dihydro-8-oxoguanine triphosphatase, 8-OXO-2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, SODIUM ION
著者Nakamura, T, Yamagata, Y.
登録日2023-01-13
公開日2023-03-22
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献Protonation states of Asp residues in the human Nudix hydrolase MTH1 contribute to its broad substrate recognition.
Febs Lett., 597, 2023
8I1D
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BU of 8i1d by Molmil
Crystal structure of human MTH1(G2K mutant) in complex with 2-oxo-dATP at pH 7.7
分子名称: 7,8-dihydro-8-oxoguanine triphosphatase, SODIUM ION, [[(2R,3S,5R)-5-(6-azanyl-2-oxidanylidene-1H-purin-9-yl)-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate
著者Nakamura, T, Yamagata, Y.
登録日2023-01-13
公開日2023-03-22
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Protonation states of Asp residues in the human Nudix hydrolase MTH1 contribute to its broad substrate recognition.
Febs Lett., 597, 2023
8I1C
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BU of 8i1c by Molmil
Crystal structure of human MTH1(G2K mutant) in complex with 8-oxo-dGTP at pH 9.1
分子名称: 7,8-dihydro-8-oxoguanine triphosphatase, GLYCEROL, SODIUM ION
著者Nakamura, T, Yamagata, Y.
登録日2023-01-13
公開日2023-03-22
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Protonation states of Asp residues in the human Nudix hydrolase MTH1 contribute to its broad substrate recognition.
Febs Lett., 597, 2023
8I1A
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BU of 8i1a by Molmil
Crystal structure of human MTH1(G2K mutant) in complex with 8-oxo-dGTP at pH 8.6
分子名称: 7,8-dihydro-8-oxoguanine triphosphatase, 8-OXO-2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, SODIUM ION
著者Nakamura, T, Yamagata, Y.
登録日2023-01-13
公開日2023-03-22
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Protonation states of Asp residues in the human Nudix hydrolase MTH1 contribute to its broad substrate recognition.
Febs Lett., 597, 2023
8I1J
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Crystal structure of human MTH1(G2K/D120N mutant) in complex with 2-oxo-dATP at pH 9.7
分子名称: 7,8-dihydro-8-oxoguanine triphosphatase, SODIUM ION, [[(2R,3S,5R)-5-(6-azanyl-2-oxidanylidene-1H-purin-9-yl)-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate
著者Nakamura, T, Yamagata, Y.
登録日2023-01-13
公開日2023-03-22
最終更新日2023-07-26
実験手法X-RAY DIFFRACTION (1.08 Å)
主引用文献Protonation states of Asp residues in the human Nudix hydrolase MTH1 contribute to its broad substrate recognition.
Febs Lett., 597, 2023

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