Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
7N02
DownloadVisualize
BU of 7n02 by Molmil
X-ray crystallographic structure model of Lactococcus lactis prolidase mutant D36S
分子名称: Aminopeptidase P family protein, MANGANESE (II) ION
著者Xu, S, Grochulski, P, Tanaka, T.
登録日2021-05-24
公開日2021-06-02
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Crystallographic structure of recombinant Lactococcus lactis prolidase to support proposed structure-function relationships.
Biochim Biophys Acta Proteins Proteom, 1865, 2017
3SKA
DownloadVisualize
BU of 3ska by Molmil
I. Novel HCV NS5B Polymerase Inhibitors: Discovery of Indole 2- Carboxylic Acids with C3-Heterocycles
分子名称: 1-[(2-aminopyridin-4-yl)methyl]-3-(2-oxo-1,2-dihydropyridin-3-yl)-5-(trifluoromethyl)-1H-indole-2-carboxylic acid, HCV NS5B RNA_DEPENDENT RNA POLYMERASE, PHOSPHATE ION
著者Lesburg, C.A, Anilkumar, G.N.
登録日2011-06-22
公開日2011-08-31
最終更新日2012-09-26
実験手法X-RAY DIFFRACTION (1.73 Å)
主引用文献I. Novel HCV NS5B polymerase inhibitors: discovery of indole 2-carboxylic acids with C3-heterocycles.
Bioorg.Med.Chem.Lett., 21, 2011
3SH0
DownloadVisualize
BU of 3sh0 by Molmil
Crystal Structure of E. coli undecaprenyl pyrophosphate synthase in complex with BPH-1065
分子名称: 2-(dodecyloxy)-6-hydroxybenzoic acid, Undecaprenyl pyrophosphate synthase
著者Cao, R, Liu, Y.-L, Oldfield, E.
登録日2011-06-15
公開日2012-12-19
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.84 Å)
主引用文献Antibacterial drug leads targeting isoprenoid biosynthesis.
Proc.Natl.Acad.Sci.USA, 110, 2013
4O0V
DownloadVisualize
BU of 4o0v by Molmil
Back pocket flexibility provides group-II PAK selectivity for type 1 kinase inhibitors
分子名称: 1-({1-(2-aminopyrimidin-4-yl)-2-[(2-methoxyethyl)amino]-1H-benzimidazol-6-yl}ethynyl)cyclohexanol, Serine/threonine-protein kinase PAK 4
著者Rouge, L, Tam, C, Wang, W.
登録日2013-12-14
公開日2014-02-12
最終更新日2014-02-26
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Back Pocket Flexibility Provides Group II p21-Activated Kinase (PAK) Selectivity for Type I 1/2 Kinase Inhibitors.
J.Med.Chem., 57, 2014
4NY0
DownloadVisualize
BU of 4ny0 by Molmil
Crystal structure of FERM domain of human focal adhesion kinase
分子名称: Focal adhesion kinase 1
著者Walkiewicz, K, Arold, S.T.
登録日2013-12-10
公開日2014-03-12
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献FAK dimerization controls its kinase-dependent functions at focal adhesions.
Embo J., 33, 2014
3TYQ
DownloadVisualize
BU of 3tyq by Molmil
SAR development and discovery of potent indole-based inhibitors of the hepatitis c virus NS5B polymerase
分子名称: 5-ethyl-1-(2-fluoro-5-nitrobenzyl)-3-(2-oxo-1,2-dihydropyridin-3-yl)-1H-indole-2-carboxylic acid, PHOSPHATE ION, RNA-directed RNA polymerase
著者Lesburg, C.A, Chen, K.X.
登録日2011-09-26
公開日2012-02-01
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献A Novel Class of Highly Potent Irreversible Hepatitis C Virus NS5B Polymerase Inhibitors.
J.Med.Chem., 55, 2012
7MLR
DownloadVisualize
BU of 7mlr by Molmil
X-ray crystal structure of human BRD4(D1) in complex with 2-(4-{5-[6-(3,5-dimethylphenoxy)pyridin-2-yl]-4-methyl-1H-1,2,3-triazol-1- yl}piperidin-1-yl)-N,N-dimethylethan-1-amine (DW34)
分子名称: 1,2-ETHANEDIOL, 2-(4-{5-[6-(3,5-dimethylphenoxy)pyridin-2-yl]-4-methyl-1H-1,2,3-triazol-1-yl}piperidin-1-yl)-N,N-dimethylethan-1-amine, Bromodomain-containing protein 4, ...
著者Cui, H, Shi, K, Aihara, H, Pomerantz, W.C.K.
登録日2021-04-28
公開日2021-07-28
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献4-Methyl-1,2,3-Triazoles as N -Acetyl-Lysine Mimics Afford Potent BET Bromodomain Inhibitors with Improved Selectivity.
J.Med.Chem., 64, 2021
4O23
DownloadVisualize
BU of 4o23 by Molmil
Crystal structure of mono-zinc form of succinyl diaminopimelate desuccinylase from Neisseria meningitidis MC58
分子名称: SULFATE ION, Succinyl-diaminopimelate desuccinylase, ZINC ION
著者Nocek, B, Holz, R, Anderson, W.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
登録日2013-12-16
公開日2014-01-15
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.09 Å)
主引用文献Inhibition of the dapE-Encoded N-Succinyl-L,L-diaminopimelic Acid Desuccinylase from Neisseria meningitidis by L-Captopril.
Biochemistry, 54, 2015
3U2S
DownloadVisualize
BU of 3u2s by Molmil
Crystal Structure of PG9 Fab in Complex with V1V2 Region from HIV-1 strain ZM109
分子名称: (R,R)-2,3-BUTANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein gp120, ...
著者McLellan, J.S, Pancera, M, Kwong, P.D.
登録日2011-10-04
公開日2011-11-30
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (1.797 Å)
主引用文献Structure of HIV-1 gp120 V1/V2 domain with broadly neutralizing antibody PG9.
Nature, 480, 2011
4O0X
DownloadVisualize
BU of 4o0x by Molmil
Back pocket flexibility provides group-II PAK selectivity for type 1 kinase inhibitors
分子名称: 1-{[1-(4-amino-1,3,5-triazin-2-yl)-2-methyl-1H-benzimidazol-6-yl]ethynyl}cyclohexanol, Serine/threonine-protein kinase PAK 4
著者Rouge, L, Tam, C, Wang, W.
登録日2013-12-14
公開日2014-02-12
最終更新日2014-11-05
実験手法X-RAY DIFFRACTION (2.483 Å)
主引用文献Back Pocket Flexibility Provides Group II p21-Activated Kinase (PAK) Selectivity for Type I 1/2 Kinase Inhibitors.
J.Med.Chem., 57, 2014
7M5O
DownloadVisualize
BU of 7m5o by Molmil
Cryo-EM structure of CasPhi-2 (Cas12j) bound to crRNA
分子名称: CasPhi, ZINC ION, crRNA
著者Pausch, P, Soczek, K, Nogales, E, Doudna, J.
登録日2021-03-24
公開日2021-08-04
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (3.54 Å)
主引用文献DNA interference states of the hypercompact CRISPR-Cas Phi effector.
Nat.Struct.Mol.Biol., 28, 2021
7MDS
DownloadVisualize
BU of 7mds by Molmil
Crystal structure of AtDHDPS1 in complex with MBDTA-2
分子名称: 4-hydroxy-tetrahydrodipicolinate synthase 1, chloroplastic, CHLORIDE ION, ...
著者Hall, C.J, Soares da Costa, T.P, Panjikar, S.
登録日2021-04-06
公開日2021-08-04
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.295 Å)
主引用文献Towards novel herbicide modes of action by inhibiting lysine biosynthesis in plants.
Elife, 10, 2021
7MQX
DownloadVisualize
BU of 7mqx by Molmil
P. putida mandelate racemase forms an oxobenzoxaborole adduct with 2-formylphenylboronic acid
分子名称: (3S)-2,1-benzoxaborole-1,3(3H)-diol, 1,2-ETHANEDIOL, MAGNESIUM ION, ...
著者Grandinetti, L, Bearne, S.L, St.Maurice, M.
登録日2021-05-06
公開日2021-08-11
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.914 Å)
主引用文献Slow-Onset, Potent Inhibition of Mandelate Racemase by 2-Formylphenylboronic Acid. An Unexpected Adduct Clasps the Catalytic Machinery.
Biochemistry, 2021
4O3M
DownloadVisualize
BU of 4o3m by Molmil
Ternary complex of Bloom's syndrome helicase
分子名称: 1,2-ETHANEDIOL, 5'-D(*AP*GP*CP*GP*TP*CP*GP*AP*GP*AP*TP*CP*CP*AP*AP*G)-3', 5'-D(*CP*TP*TP*GP*GP*AP*TP*CP*TP*CP*GP*AP*CP*GP*CP*TP*CP*TP*CP*CP*CP*TP*TP*A)-3', ...
著者Swan, M.K, Bertrand, J.
登録日2013-12-18
公開日2014-03-12
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structure of human Bloom's syndrome helicase in complex with ADP and duplex DNA.
Acta Crystallogr.,Sect.D, 70, 2014
7MLX
DownloadVisualize
BU of 7mlx by Molmil
SARS-CoV-2 programmed -1 frameshifting element three stem H-type pseudoknot
分子名称: BL3-6 Fab Heavy Chain, BL3-6 Fab Light Chain, RNA (65-MER)
著者Roman, C, Lewicka, A.
登録日2021-04-29
公開日2021-08-11
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.09 Å)
主引用文献The SARS-CoV-2 Programmed -1 Ribosomal Frameshifting Element Crystal Structure Solved to 2.09 angstrom Using Chaperone-Assisted RNA Crystallography.
Acs Chem.Biol., 16, 2021
3U2Q
DownloadVisualize
BU of 3u2q by Molmil
EF-Tu (Escherichia coli) in complex with NVP-LFF571
分子名称: Elongation factor Tu 1, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
著者Palestrant, D.J.
登録日2011-10-04
公開日2012-05-02
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Discovery of LFF571: an investigational agent for Clostridium difficile infection.
J.Med.Chem., 55, 2012
7M2P
DownloadVisualize
BU of 7m2p by Molmil
Structure of the SARS-CoV-2 3CL protease in complex with inhibitor 18
分子名称: 3C-like proteinase, Inhibitor 18 in bound form
著者Yang, K, Li, L.
登録日2021-03-17
公開日2021-08-25
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Self-Masked Aldehyde Inhibitors: A Novel Strategy for Inhibiting Cysteine Proteases.
J.Med.Chem., 64, 2021
4MT1
DownloadVisualize
BU of 4mt1 by Molmil
Crystal Structure of the Neisseria gonorrhoeae MtrD Inner Membrane Multidrug Efflux Pump
分子名称: Drug efflux protein
著者Su, C.-C, Bolla, J.R, Yu, E.W.
登録日2013-09-18
公開日2014-08-06
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (3.54 Å)
主引用文献Crystal structure of the open state of the Neisseria gonorrhoeae MtrE outer membrane channel.
Plos One, 9, 2014
7LM3
DownloadVisualize
BU of 7lm3 by Molmil
Crystal Structure of Thr316Ala mutant of JAMM domain of S. pombe
分子名称: AMSH-like protease sst2, PHOSPHATE ION, ZINC ION
著者Shrestha, R, Das, C.
登録日2021-02-05
公開日2021-06-30
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Crystal structure of the Thr316Ala mutant of a yeast JAMM deubiquitinase: implication of active-site loop dynamics in catalysis.
Acta Crystallogr.,Sect.F, 77, 2021
4OEJ
DownloadVisualize
BU of 4oej by Molmil
Structure of membrane binding protein pleurotolysin B from Pleurotus ostreatus
分子名称: ACETATE ION, CHLORIDE ION, GLYCEROL, ...
著者Dunstone, M.A, Caradoc-Davies, T.T, Whisstock, J.C, Law, R.H.P.
登録日2014-01-13
公開日2015-02-18
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Conformational Changes during Pore Formation by the Perforin-Related Protein Pleurotolysin.
Plos Biol., 13, 2015
4O8G
DownloadVisualize
BU of 4o8g by Molmil
Structure of Infrared Fluorescent Protein 1.4
分子名称: 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid, 3-[2-[(Z)-[5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-pyrrol-1-ium-2-ylidene]methyl]-5-[(Z)-[(3E,4R)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid, Bacteriophytochrome
著者Bhattacharya, S, Forest, K.T.
登録日2013-12-27
公開日2014-10-01
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.652 Å)
主引用文献Origins of fluorescence in evolved bacteriophytochromes.
J.Biol.Chem., 289, 2014
3RKW
DownloadVisualize
BU of 3rkw by Molmil
Structural characterisation of staphylococcus aureus biotin protein ligase
分子名称: BIOTINYL-5-AMP, Biotin-[acetyl-CoA-carboxylase] ligase
著者Wilce, M.C.J, Pendini, N.R, Yap, M.Y.
登録日2011-04-18
公開日2012-04-18
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural characterisation of staphylococcus aureus biotin protein ligase
To be published
3RRC
DownloadVisualize
BU of 3rrc by Molmil
Crystal Structure of Region II from Plasmodium vivax Duffy Binding Protein
分子名称: 1,2-ETHANEDIOL, Duffy receptor, PHOSPHATE ION
著者Tolia, N.H.
登録日2011-04-29
公開日2011-07-13
最終更新日2017-11-08
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Dimerization of Plasmodium vivax DBP is induced upon receptor binding and drives recognition of DARC.
Nat.Struct.Mol.Biol., 18, 2011
7LRN
DownloadVisualize
BU of 7lrn by Molmil
Structure of the Siderophore Interacting Protein from Acinetbacter baumannii
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, NADPH-dependent ferric siderophore reductase
著者Tanner, J.J, Korasick, D.A.
登録日2021-02-16
公開日2021-07-21
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.85 Å)
主引用文献Structural and Biochemical Characterization of the Flavin-Dependent Siderophore-Interacting Protein from Acinetobacter baumannii .
Acs Omega, 6, 2021
7LZI
DownloadVisualize
BU of 7lzi by Molmil
Structure of the glutamate receptor-like channel AtGLR3.4
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, GLUTAMIC ACID, Glutamate receptor 3.4
著者Gangwar, S.P, Green, M.N, Sobolevsky, A.I.
登録日2021-03-09
公開日2021-07-28
最終更新日2021-08-18
実験手法ELECTRON MICROSCOPY (4.39 Å)
主引用文献Structure of the Arabidopsis thaliana glutamate receptor-like channel GLR3.4.
Mol.Cell, 81, 2021

225399

件を2024-09-25に公開中

PDB statisticsPDBj update infoContact PDBjnumon