5SWW
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![BU of 5sww by Molmil](/molmil-images/mine/5sww) | Crystal Structure of Human APOBEC3A complexed with ssDNA | 分子名称: | DNA 15-Mer, DNA dC->dU-editing enzyme APOBEC-3A, GLYCEROL, ... | 著者 | Shi, K, Banerjee, S, Kurahashi, K, Aihara, H. | 登録日 | 2016-08-09 | 公開日 | 2016-12-28 | 最終更新日 | 2023-10-04 | 実験手法 | X-RAY DIFFRACTION (3.151 Å) | 主引用文献 | Structural basis for targeted DNA cytosine deamination and mutagenesis by APOBEC3A and APOBEC3B. Nat. Struct. Mol. Biol., 24, 2017
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5SXG
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![BU of 5sxg by Molmil](/molmil-images/mine/5sxg) | Crystal Structure of the Cancer Genomic DNA Mutator APOBEC3B | 分子名称: | 1,3-PROPANDIOL, DNA dC->dU-editing enzyme APOBEC-3B, IMIDAZOLE, ... | 著者 | Shi, K, Kurahashi, K, Aihara, H. | 登録日 | 2016-08-09 | 公開日 | 2017-12-27 | 最終更新日 | 2023-10-04 | 実験手法 | X-RAY DIFFRACTION (1.93 Å) | 主引用文献 | Conformational Switch Regulates the DNA Cytosine Deaminase Activity of Human APOBEC3B. Sci Rep, 7, 2017
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5TD5
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![BU of 5td5 by Molmil](/molmil-images/mine/5td5) | Crystal Structure of Human APOBEC3B variant complexed with ssDNA | 分子名称: | 1,2-ETHANEDIOL, CHLORIDE ION, DNA (5'-D(P*TP*TP*CP*AP*T)-3'), ... | 著者 | Shi, K, Banerjee, S, Kurahashi, K, Aihara, H. | 登録日 | 2016-09-16 | 公開日 | 2016-12-28 | 最終更新日 | 2024-03-06 | 実験手法 | X-RAY DIFFRACTION (1.718 Å) | 主引用文献 | Structural basis for targeted DNA cytosine deamination and mutagenesis by APOBEC3A and APOBEC3B. Nat. Struct. Mol. Biol., 24, 2017
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5U0L
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![BU of 5u0l by Molmil](/molmil-images/mine/5u0l) | X-ray crystal structure of fatty aldehyde dehydrogenase enzymes from Marinobacter aquaeolei VT8 complexed with a substrate | 分子名称: | (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, CHLORIDE ION, ... | 著者 | Shi, K, Mulliner, K, Barney, B.M, Aihara, H. | 登録日 | 2016-11-24 | 公開日 | 2017-04-26 | 最終更新日 | 2023-10-04 | 実験手法 | X-RAY DIFFRACTION (2.285 Å) | 主引用文献 | Five Fatty Aldehyde Dehydrogenase Enzymes from Marinobacter and Acinetobacter spp. and Structural Insights into the Aldehyde Binding Pocket. Appl. Environ. Microbiol., 83, 2017
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5U0M
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![BU of 5u0m by Molmil](/molmil-images/mine/5u0m) | Fatty aldehyde dehydrogenase from Marinobacter aquaeolei VT8 and cofactor complex | 分子名称: | 1,2-ETHANEDIOL, CITRIC ACID, N-succinylglutamate 5-semialdehyde dehydrogenase, ... | 著者 | Shi, K, Mulliner, K, Barney, B.M, Aihara, H. | 登録日 | 2016-11-24 | 公開日 | 2017-04-26 | 最終更新日 | 2023-10-04 | 実験手法 | X-RAY DIFFRACTION (3.075 Å) | 主引用文献 | Five Fatty Aldehyde Dehydrogenase Enzymes from Marinobacter and Acinetobacter spp. and Structural Insights into the Aldehyde Binding Pocket. Appl. Environ. Microbiol., 83, 2017
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6U82
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![BU of 6u82 by Molmil](/molmil-images/mine/6u82) | |
6U81
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![BU of 6u81 by Molmil](/molmil-images/mine/6u81) | |
1BMQ
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![BU of 1bmq by Molmil](/molmil-images/mine/1bmq) | CRYSTAL STRUCTURE OF THE COMPLEX OF INTERLEUKIN-1BETA CONVERTING ENZYME (ICE) WITH A PEPTIDE BASED INHIBITOR, (3S )-N-METHANESULFONYL-3-({1-[N-(2-NAPHTOYL)-L-VALYL]-L-PROLYL }AMINO)-4-OXOBUTANAMIDE | 分子名称: | (3S)-N-METHANESULFONYL-3-({1-[N-(2-NAPHTOYL)-L-VALYL]-L-PROLYL}AMINO)-4-OXOBUTANAMIDE, PROTEIN (INTERLEUKIN-1 BETA CONVERTASE) | 著者 | Okamoto, Y, Anan, H, Nakai, E, Morihira, K, Yonetoku, Y, Kurihara, H, Katayama, N, Sakashita, H, Terai, Y, Takeuchi, M, Shibanuma, T, Isomura, Y. | 登録日 | 1998-07-24 | 公開日 | 1998-07-29 | 最終更新日 | 2023-08-09 | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | 主引用文献 | Peptide based interleukin-1 beta converting enzyme (ICE) inhibitors: synthesis, structure activity relationships and crystallographic study of the ICE-inhibitor complex. Chem.Pharm.Bull., 47, 1999
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6VOY
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![BU of 6voy by Molmil](/molmil-images/mine/6voy) | Cryo-EM structure of HTLV-1 instasome | 分子名称: | DNA (25-MER), DNA (5'-D(P*AP*CP*AP*CP*AP*CP*TP*TP*GP*AP*CP*TP*AP*GP*GP*GP*TP*G)-3'), DNA-binding protein 7d, ... | 著者 | Bhatt, V, Shi, K, Sundborger, A, Aihara, H. | 登録日 | 2020-02-01 | 公開日 | 2020-07-01 | 実験手法 | ELECTRON MICROSCOPY (3.7 Å) | 主引用文献 | Structural basis of host protein hijacking in human T-cell leukemia virus integration. Nat Commun, 11, 2020
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6VK5
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![BU of 6vk5 by Molmil](/molmil-images/mine/6vk5) | Crystal Structure of Methylosinus trichosporium OB3b Soluble Methane Monooxygenase Hydroxylase and Regulatory Component Complex | 分子名称: | 1,2-ETHANEDIOL, BENZOIC ACID, CHLORIDE ION, ... | 著者 | Jones, J.C, Banerjee, R, Shi, K, Aihara, H, Lipscomb, J.D. | 登録日 | 2020-01-18 | 公開日 | 2020-08-05 | 最終更新日 | 2023-10-11 | 実験手法 | X-RAY DIFFRACTION (1.86 Å) | 主引用文献 | Structural Studies of theMethylosinus trichosporiumOB3b Soluble Methane Monooxygenase Hydroxylase and Regulatory Component Complex Reveal a Transient Substrate Tunnel. Biochemistry, 59, 2020
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6VK7
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![BU of 6vk7 by Molmil](/molmil-images/mine/6vk7) | Crystal Structure of reduced Methylosinus trichosporium OB3b Soluble Methane Monooxygenase Hydroxylase | 分子名称: | FE (III) ION, Methane monooxygenase, Methane monooxygenase component A alpha chain | 著者 | Jones, J.C, Banerjee, R, Shi, K, Aihara, H, Lipscomb, J.D. | 登録日 | 2020-01-18 | 公開日 | 2020-08-05 | 最終更新日 | 2023-10-11 | 実験手法 | X-RAY DIFFRACTION (2.12 Å) | 主引用文献 | Structural Studies of theMethylosinus trichosporiumOB3b Soluble Methane Monooxygenase Hydroxylase and Regulatory Component Complex Reveal a Transient Substrate Tunnel. Biochemistry, 59, 2020
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6VK4
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![BU of 6vk4 by Molmil](/molmil-images/mine/6vk4) | Crystal Structure of Methylosinus trichosporium OB3b Soluble Methane Monooxygenase Hydroxylase and Regulatory Component Complex | 分子名称: | 1,2-ETHANEDIOL, BENZOIC ACID, FE (II) ION, ... | 著者 | Jones, J.C, Banerjee, R, Shi, K, Aihara, H, Lipscomb, J.D. | 登録日 | 2020-01-18 | 公開日 | 2020-08-05 | 最終更新日 | 2024-05-22 | 実験手法 | X-RAY DIFFRACTION (2.35 Å) | 主引用文献 | Structural Studies of theMethylosinus trichosporiumOB3b Soluble Methane Monooxygenase Hydroxylase and Regulatory Component Complex Reveal a Transient Substrate Tunnel. Biochemistry, 59, 2020
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6VK8
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![BU of 6vk8 by Molmil](/molmil-images/mine/6vk8) | Crystal Structure of Methylosinus trichosporium OB3b Soluble Methane Monooxygenase Hydroxylase and Regulatory Component Complex with small organic carboxylate at active center | 分子名称: | 1,2-ETHANEDIOL, BENZOIC ACID, FE (III) ION, ... | 著者 | Jones, J.C, Banerjee, R, Shi, K, Aihara, H, Lipscomb, J.D. | 登録日 | 2020-01-18 | 公開日 | 2020-08-05 | 最終更新日 | 2024-03-06 | 実験手法 | X-RAY DIFFRACTION (2.03 Å) | 主引用文献 | Structural Studies of theMethylosinus trichosporiumOB3b Soluble Methane Monooxygenase Hydroxylase and Regulatory Component Complex Reveal a Transient Substrate Tunnel. Biochemistry, 59, 2020
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6VK6
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![BU of 6vk6 by Molmil](/molmil-images/mine/6vk6) | Crystal Structure of Methylosinus trichosporium OB3b Soluble Methane Monooxygenase Hydroxylase | 分子名称: | 1,2-ETHANEDIOL, CHLORIDE ION, FE (III) ION, ... | 著者 | Jones, J.C, Banerjee, R, Shi, K, Aihara, H, Lipscomb, J.D. | 登録日 | 2020-01-18 | 公開日 | 2020-08-05 | 最終更新日 | 2023-10-11 | 実験手法 | X-RAY DIFFRACTION (1.52 Å) | 主引用文献 | Structural Studies of theMethylosinus trichosporiumOB3b Soluble Methane Monooxygenase Hydroxylase and Regulatory Component Complex Reveal a Transient Substrate Tunnel. Biochemistry, 59, 2020
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6VW1
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![BU of 6vw1 by Molmil](/molmil-images/mine/6vw1) | Structure of SARS-CoV-2 chimeric receptor-binding domain complexed with its receptor human ACE2 | 分子名称: | 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... | 著者 | Shang, J, Ye, G, Shi, K, Wan, Y.S, Aihara, H, Li, F. | 登録日 | 2020-02-18 | 公開日 | 2020-03-04 | 最終更新日 | 2023-10-11 | 実験手法 | X-RAY DIFFRACTION (2.68 Å) | 主引用文献 | Structural basis of receptor recognition by SARS-CoV-2. Nature, 581, 2020
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6CWJ
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![BU of 6cwj by Molmil](/molmil-images/mine/6cwj) | Crystal structures of cyanuric acid hydrolase from Moorella thermoacetica complexed with 1,3-Acetone Dicarboxylic Acid | 分子名称: | 1,3-PROPANDIOL, 3-oxopentanedioic acid, ACETATE ION, ... | 著者 | Shi, K, Aihara, H. | 登録日 | 2018-03-30 | 公開日 | 2019-06-12 | 最終更新日 | 2023-10-04 | 実験手法 | X-RAY DIFFRACTION (2.253 Å) | 主引用文献 | Crystal structures of Moorella thermoacetica cyanuric acid hydrolase reveal conformational flexibility and asymmetry important for catalysis. Plos One, 14, 2019
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7TV2
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![BU of 7tv2 by Molmil](/molmil-images/mine/7tv2) | |
6DHJ
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![BU of 6dhj by Molmil](/molmil-images/mine/6dhj) | |
6DT1
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![BU of 6dt1 by Molmil](/molmil-images/mine/6dt1) | Crystal structure of the ligase from bacteriophage T4 complexed with DNA intermediate | 分子名称: | 2,3-DIHYDROXY-1,4-DITHIOBUTANE, ADENOSINE MONOPHOSPHATE, CHLORIDE ION, ... | 著者 | Shi, K, Aihara, H. | 登録日 | 2018-06-14 | 公開日 | 2018-09-19 | 最終更新日 | 2023-10-11 | 実験手法 | X-RAY DIFFRACTION (2.75 Å) | 主引用文献 | T4 DNA ligase structure reveals a prototypical ATP-dependent ligase with a unique mode of sliding clamp interaction. Nucleic Acids Res., 46, 2018
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8E14
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![BU of 8e14 by Molmil](/molmil-images/mine/8e14) | Cryo-EM structure of Rous sarcoma virus strand transfer complex | 分子名称: | DNA (42-MER), DNA (5'-D(*AP*AP*TP*GP*TP*TP*GP*TP*CP*TP*TP*AP*TP*GP*CP*AP*AP*TP*AP*CP*TP*C)-3'), DNA (5'-D(*AP*GP*TP*GP*TP*CP*TP*TP*CP*TP*TP*CP*TP*TP*TP*C)-3'), ... | 著者 | Pandey, K.K, Bera, S, Shi, K, Aihara, H, Grandgenett, D.P. | 登録日 | 2022-08-09 | 公開日 | 2023-04-26 | 最終更新日 | 2023-10-18 | 実験手法 | ELECTRON MICROSCOPY (3.36 Å) | 主引用文献 | Molecular determinants for Rous sarcoma virus intasome assemblies involved in retroviral integration. J.Biol.Chem., 299, 2023
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8E5D
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![BU of 8e5d by Molmil](/molmil-images/mine/8e5d) | Crystal structure of double-stranded DNA deaminase toxin DddA in complex with DNA with the target cytosine parked in the major groove | 分子名称: | DNA (5'-D(*GP*TP*AP*CP*CP*GP*GP*AP*CP*GP*TP*TP*GP*C)-3'), Double-stranded DNA deaminase toxin A, MAGNESIUM ION, ... | 著者 | Yin, L.L, Shi, K, Aihara, H. | 登録日 | 2022-08-21 | 公開日 | 2023-05-24 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.39 Å) | 主引用文献 | Structural basis of sequence-specific cytosine deamination by double-stranded DNA deaminase toxin DddA. Nat.Struct.Mol.Biol., 30, 2023
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8E5E
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![BU of 8e5e by Molmil](/molmil-images/mine/8e5e) | Crystal structure of double-stranded DNA deaminase toxin DddA in complex with DNA with the target cytosine flipped into the active site | 分子名称: | DNA (5'-D(*GP*CP*AP*AP*CP*GP*TP*CP*CP*GP*GP*TP*AP*C)-3'), DNA (5'-D(*GP*TP*AP*CP*CP*GP*GP*AP*CP*GP*TP*TP*GP*C)-3'), Double-stranded DNA deaminase toxin A, ... | 著者 | Yin, L.L, Shi, K, Aihara, H. | 登録日 | 2022-08-21 | 公開日 | 2023-05-24 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.62 Å) | 主引用文献 | Structural basis of sequence-specific cytosine deamination by double-stranded DNA deaminase toxin DddA. Nat.Struct.Mol.Biol., 30, 2023
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6DRT
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8EUO
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![BU of 8euo by Molmil](/molmil-images/mine/8euo) | Hydroxynitrile Lyase from Hevea brasiliensis with Seven Mutations | 分子名称: | (S)-hydroxynitrile lyase | 著者 | Greenberg, L.R, Walsh, M.E, Kazlauskas, R.J, Pierce, C.T, Shi, K, Aihara, H, Evans, R.L. | 登録日 | 2022-10-19 | 公開日 | 2022-11-30 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (1.99 Å) | 主引用文献 | to be published To Be Published
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8EJO
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![BU of 8ejo by Molmil](/molmil-images/mine/8ejo) | Crystal structure of the homeodomain of Platypus sDUX in complex with DNA | 分子名称: | 1,2-ETHANEDIOL, DNA (5'-D(*GP*CP*GP*TP*AP*AP*TP*CP*TP*AP*AP*TP*CP*AP*AP*CP*A)-3'), DNA (5'-D(*TP*GP*TP*TP*GP*AP*TP*TP*AP*GP*AP*TP*TP*AP*CP*GP*C)-3'), ... | 著者 | Yin, L.L, Shi, K, Aihara, H. | 登録日 | 2022-09-18 | 公開日 | 2023-09-20 | 最終更新日 | 2023-10-04 | 実験手法 | X-RAY DIFFRACTION (2.67 Å) | 主引用文献 | Antagonism among DUX family members evolved from an ancestral toxic single homeodomain protein. Iscience, 26, 2023
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