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7MW5
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BU of 7mw5 by Molmil
Structure of the SARS-CoV-2 Spike trimer with one RBD down in complex with the Fab fragment of human neutralizing antibody clone 2
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Fab of antibody clone 2, ...
著者Hu, Y, Xiong, Y.
登録日2021-05-15
公開日2022-03-16
最終更新日2023-11-01
実験手法ELECTRON MICROSCOPY (3.42 Å)
主引用文献Monospecific and bispecific monoclonal SARS-CoV-2 neutralizing antibodies that maintain potency against B.1.617.
Nat Commun, 13, 2022
8D4L
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BU of 8d4l by Molmil
Crystal Structure of SARS-CoV-2 Main Protease (Mpro) S144A Mutant
分子名称: 3C-like proteinase nsp5
著者Lewandowski, E.M, Hu, Y, Tan, H, Wang, J, Chen, Y.
登録日2022-06-02
公開日2022-07-13
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Naturally occurring mutations of SARS-CoV-2 main protease confer drug resistance to nirmatrelvir.
Biorxiv, 2022
8D4K
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BU of 8d4k by Molmil
Crystal Structure of SARS-CoV-2 Main Protease (Mpro) H172Y Mutant in Complex with Inhibitor GC376
分子名称: (1S,2S)-2-({N-[(benzyloxy)carbonyl]-L-leucyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid, 3C-like proteinase nsp5
著者Lewandowski, E.M, Hu, Y, Tan, H, Wang, J, Chen, Y.
登録日2022-06-02
公開日2022-07-13
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.89 Å)
主引用文献Naturally occurring mutations of SARS-CoV-2 main protease confer drug resistance to nirmatrelvir.
Biorxiv, 2022
8D4M
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BU of 8d4m by Molmil
Crystal Structure of SARS-CoV-2 Main Protease (Mpro) S144A Mutant in Complex with Inhibitor GC376
分子名称: (1S,2S)-2-({N-[(benzyloxy)carbonyl]-L-leucyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid, 3C-like proteinase nsp5
著者Lewandowski, E.M, Hu, Y, Tan, H, Wang, J, Chen, Y.
登録日2022-06-02
公開日2022-07-13
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.81 Å)
主引用文献Naturally occurring mutations of SARS-CoV-2 main protease confer drug resistance to nirmatrelvir.
Biorxiv, 2022
8D4J
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BU of 8d4j by Molmil
Crystal Structure of SARS-CoV-2 Main Protease (Mpro) H172Y Mutant
分子名称: 3C-like proteinase nsp5, GLYCEROL
著者Lewandowski, E.M, Hu, Y, Tan, H, Wang, J, Chen, Y.
登録日2022-06-02
公開日2022-07-13
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.78 Å)
主引用文献Naturally occurring mutations of SARS-CoV-2 main protease confer drug resistance to nirmatrelvir.
Biorxiv, 2022
8D4N
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BU of 8d4n by Molmil
Crystal Structure of SARS-CoV-2 Main Protease (Mpro) E166Q Mutant
分子名称: 3C-like proteinase nsp5
著者Lewandowski, E.M, Hu, Y, Tan, H, Wang, J, Chen, Y.
登録日2022-06-02
公開日2022-07-13
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Naturally occurring mutations of SARS-CoV-2 main protease confer drug resistance to nirmatrelvir.
Biorxiv, 2022
2MQW
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BU of 2mqw by Molmil
Solution structure of a proteasome related subunit N terminal domain
分子名称: 26S proteasome regulatory subunit RPN9
著者Wu, Y, Hu, Y, Jin, C.
登録日2014-06-30
公開日2015-02-04
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Solution structure of yeast Rpn9: insights into proteasome lid assembly.
J. Biol. Chem., 290, 2015
2MRI
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BU of 2mri by Molmil
Solution structure of a proteasome related subunit C terminal domain
分子名称: 26S proteasome regulatory subunit RPN9
著者Wu, Y, Hu, Y, Jin, C.
登録日2014-07-06
公開日2015-02-04
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Solution structure of yeast Rpn9: insights into proteasome lid assembly.
J. Biol. Chem., 290, 2015
2MR3
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BU of 2mr3 by Molmil
A subunit of 26S proteasome lid complex
分子名称: 26S proteasome regulatory subunit RPN9
著者Wu, Y, Hu, Y, Jin, C.
登録日2014-06-30
公開日2015-02-04
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Solution structure of yeast Rpn9: insights into proteasome lid assembly.
J. Biol. Chem., 290, 2015
8GQ6
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BU of 8gq6 by Molmil
Cryo-EM Structure of the KBTBD2-CUL3-Rbx1 dimeric complex
分子名称: Cullin-3, E3 ubiquitin-protein ligase RBX1, Kelch repeat and BTB domain-containing protein 2, ...
著者Sun, L, Chen, Z, Hu, Y, Mao, Q.
登録日2022-08-29
公開日2023-09-06
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (3.96 Å)
主引用文献Dynamic molecular architecture and substrate recruitment of cullin3-RING E3 ligase CRL3 KBTBD2.
Nat.Struct.Mol.Biol., 31, 2024
8DTY
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BU of 8dty by Molmil
Recombinant mouse RyR2 triple phosphomimetic mutant S2807D/S2813D/S2030D in complex with FKBP12.6 and nanodisc under closed-state conditions
分子名称: Peptidyl-prolyl cis-trans isomerase FKBP1B, Ryanodine receptor 2, ZINC ION
著者Iyer, K.A, Hu, Y, Murayama, T, Samso, M.
登録日2022-07-26
公開日2024-01-31
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Recombinant mouse RyR2 triple phosphomimetic mutant S2807D/S2813D/S2030D in complex with FKBP12.6 and nanodisc under closed-state conditions
To Be Published
8DVV
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BU of 8dvv by Molmil
Recombinant mouse RyR2 triple phosphomimetic mutant S2807D/S2813D/S2030D in complex with FKBP12.6 and nanodisc under open-state conditions
分子名称: CALCIUM ION, Peptidyl-prolyl cis-trans isomerase FKBP1B, Ryanodine receptor 2, ...
著者Iyer, K.A, Hu, Y, Murayama, T, Samso, M.
登録日2022-07-29
公開日2024-01-31
実験手法ELECTRON MICROSCOPY (3.68 Å)
主引用文献Recombinant mouse RyR2 triple phosphomimetic mutant S2807D/S2813D/S2030D in complex with FKBP12.6 and nanodisc under open-state conditions
To Be Published
8DTZ
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BU of 8dtz by Molmil
Recombinant mouse RyR2 triple phosphonull mutant S2807A/S2813A/S2030A in complex with FKBP12.6 and nanodisc under closed-state conditions
分子名称: Peptidyl-prolyl cis-trans isomerase FKBP1B, Ryanodine receptor 2, ZINC ION
著者Iyer, K.A, Hu, Y, Murayama, T, Samso, M.
登録日2022-07-26
公開日2024-01-31
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Recombinant mouse RyR2 triple phosphonull mutant S2807A/S2813A/S2030A in complex with FKBP12.6 and nanodisc under closed-state conditions
To Be Published
3SWJ
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BU of 3swj by Molmil
Crystal structure of Campylobacter jejuni ChuZ
分子名称: AZIDE ION, PROTOPORPHYRIN IX CONTAINING FE, Putative uncharacterized protein
著者Hu, Y.
登録日2011-07-14
公開日2011-11-09
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.409 Å)
主引用文献Crystal structure of Campylobacter jejuni ChuZ: a split-barrel family heme oxygenase with a novel heme-binding mode.
Biochem.Biophys.Res.Commun., 415, 2011
2IPA
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BU of 2ipa by Molmil
solution structure of Trx-ArsC complex
分子名称: Protein arsC, Thioredoxin
著者Jin, C, Hu, Y, Li, Y, Zhang, X.
登録日2006-10-12
公開日2007-02-13
最終更新日2021-11-10
実験手法SOLUTION NMR
主引用文献Conformational fluctuations coupled to the thiol-disulfide transfer between thioredoxin and arsenate reductase in Bacillus subtilis.
J.Biol.Chem., 282, 2007
6VXT
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BU of 6vxt by Molmil
Activated Nitrogenase MoFe-protein from Azotobacter vinelandii
分子名称: 3-HYDROXY-3-CARBOXY-ADIPIC ACID, FE (III) ION, FE(8)-S(7) CLUSTER, ...
著者Kang, W, Hu, Y, Ribbe, M.W.
登録日2020-02-24
公開日2020-06-24
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.74 Å)
主引用文献Structural evidence for a dynamic metallocofactor during N2reduction by Mo-nitrogenase.
Science, 368, 2020
5B7J
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BU of 5b7j by Molmil
Structure model of Sap1-DNA complex
分子名称: DNA (5'-D(*AP*AP*TP*AP*TP*TP*GP*TP*TP*TP*TP*G)-3'), DNA (5'-D(*CP*AP*AP*AP*AP*CP*AP*AP*TP*AP*TP*T)-3'), Switch-activating protein 1
著者Jin, C, Hu, Y, Ding, J, Zhang, Y.
登録日2016-06-07
公開日2017-02-22
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Sap1 is a replication-initiation factor essential for the assembly of pre-replicative complex in the fission yeast Schizosaccharomyces pombe
J. Biol. Chem., 292, 2017
4D8M
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BU of 4d8m by Molmil
Crystal structure of Bacillus thuringiensis Cry5B nematocidal toxin
分子名称: Pesticidal crystal protein cry5Ba
著者Fan, H, Hu, Y, Aroian, R.V, Ghosh, P, Berkeley Structural Genomics Center (BSGC)
登録日2012-01-10
公開日2012-12-19
最終更新日2013-02-20
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structure and Glycolipid Binding Properties of the Nematicidal Protein Cry5B.
Biochemistry, 51, 2012
1XVA
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BU of 1xva by Molmil
METHYLTRANSFERASE
分子名称: ACETATE ION, GLYCINE N-METHYLTRANSFERASE, S-ADENOSYLMETHIONINE
著者Fu, Z, Hu, Y, Konishi, K, Takata, Y, Ogawa, H, Gomi, T, Fujioka, M, Takusagawa, F.
登録日1996-07-20
公開日1997-01-27
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of glycine N-methyltransferase from rat liver.
Biochemistry, 35, 1996
4KQZ
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BU of 4kqz by Molmil
structure of the receptor binding domain (RBD) of MERS-CoV spike
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, S protein
著者Lu, G, Hu, Y, Wang, Q, Qi, J, Gao, F, Li, Y, Zhang, Y, Zhang, W, Yuan, Y, Bao, J, Zhang, B, Shi, Y, Yan, J, Gao, G.F.
登録日2013-05-15
公開日2013-07-10
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.514 Å)
主引用文献Molecular basis of binding between novel human coronavirus MERS-CoV and its receptor CD26.
Nature, 500, 2013
1LI4
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BU of 1li4 by Molmil
Human S-adenosylhomocysteine hydrolase complexed with neplanocin
分子名称: 3-(6-AMINO-PURIN-9-YL)-5-HYDROXYMETHYL-CYCLOPENTANE-1,2-DIOL, ISOPROPYL ALCOHOL, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
著者Yang, X, Hu, Y, Yin, D.H, Turner, M.A, Wang, M, Borchardt, R.T, Howell, P.L, Kuczera, K, Schowen, R.L.
登録日2002-04-17
公開日2003-05-20
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (2.01 Å)
主引用文献Catalytic strategy of S-adenosyl-L-homocysteine hydrolase: Transition-state stabilization and the avoidance of abortive reactions
Biochemistry, 42, 2003
4KR0
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BU of 4kr0 by Molmil
Complex structure of MERS-CoV spike RBD bound to CD26
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Dipeptidyl peptidase 4, ...
著者Lu, G, Hu, Y, Wang, Q, Qi, J, Gao, F, Li, Y, Zhang, Y, Zhang, W, Yuan, Y, Zhang, B, Shi, Y, Yan, J, Gao, G.F.
登録日2013-05-15
公開日2013-07-10
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.702 Å)
主引用文献Molecular basis of binding between novel human coronavirus MERS-CoV and its receptor CD26.
Nature, 500, 2013
3LKX
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BU of 3lkx by Molmil
Human nac dimerization domain
分子名称: Nascent polypeptide-associated complex subunit alpha, Transcription factor BTF3
著者Liu, Y, Hu, Y, Li, X, Niu, L, Teng, M.
登録日2010-01-28
公開日2010-03-23
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献The crystal structure of the human nascent polypeptide-associated complex domain reveals a nucleic acid-binding region on the NACA subunit
Biochemistry, 49, 2010
2MYP
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BU of 2myp by Molmil
An arsenate reductase in the phosphate binding state
分子名称: Glutaredoxin arsenate reductase
著者Jin, C, Yu, C, Hu, C, Hu, Y.
登録日2015-01-30
公開日2015-08-05
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献A Hybrid Mechanism for the Synechocystis Arsenate Reductase Revealed by Structural Snapshots during Arsenate Reduction.
J.Biol.Chem., 290, 2015
2MYT
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BU of 2myt by Molmil
An arsenate reductase in the intermediate state
分子名称: Glutaredoxin arsenate reductase
著者Jin, C, Yu, C, Hu, C, Hu, Y.
登録日2015-01-30
公開日2015-08-05
最終更新日2015-09-23
実験手法SOLUTION NMR
主引用文献A Hybrid Mechanism for the Synechocystis Arsenate Reductase Revealed by Structural Snapshots during Arsenate Reduction.
J.Biol.Chem., 290, 2015

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