Loading
PDBj
English日本語简体中文繁體中文한국어
✖
ﾒﾆｭｰPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
5XNV
DownloadVisualize
BU of 5xnv by Molmil
Crystal structure of YEATS2 YEATS bound to H3K27ac peptide
分子名称: ALA-ALA-ARG-ALY-SER-ALA-PRO-ALA, AMMONIUM ION, CHLORIDE ION, ...
著者Li, H.T, Guan, H.P, Zhao, D.
登録日2017-05-24
公開日2017-11-01
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.696 Å)
主引用文献YEATS2 links histone acetylation to tumorigenesis of non-small cell lung cancer.
Nat Commun, 8, 2017
6VJY
DownloadVisualize
BU of 6vjy by Molmil
Cryo-EM structure of Hrd1/Hrd3 monomer
分子名称: ERAD-associated E3 ubiquitin-protein ligase HRD1, ERAD-associated E3 ubiquitin-protein ligase component HRD3
著者Wu, X, Rapoport, T.A.
登録日2020-01-18
公開日2020-04-29
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (4.3 Å)
主引用文献Structural basis of ER-associated protein degradation mediated by the Hrd1 ubiquitin ligase complex.
Science, 368, 2020
6DS6
DownloadVisualize
BU of 6ds6 by Molmil
Crystal structure of p300 ZZ domain in complex with histone H3 peptide
分子名称: CHLORIDE ION, Histone H3 peptide-Histone acetyltransferase p300 Chimeric protein, ZINC ION
著者Zhang, Y, Kutateladze, T.G.
登録日2018-06-13
公開日2018-08-29
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献The ZZ domain of p300 mediates specificity of the adjacent HAT domain for histone H3.
Nat. Struct. Mol. Biol., 25, 2018
6OIE
DownloadVisualize
BU of 6oie by Molmil
The double PHD finger (DPF) of MORF in complex with histone H3K14cr
分子名称: Histone H3.1t peptide, Histone acetyltransferase KAT6B, ZINC ION
著者Klein, B.J, Kutateladze, T.G.
登録日2019-04-09
公開日2019-11-20
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.075 Å)
主引用文献Histone H3K23-specific acetylation by MORF is coupled to H3K14 acylation.
Nat Commun, 10, 2019
6XKC
DownloadVisualize
BU of 6xkc by Molmil
Crystal structure of E3 ligase
分子名称: Protein fem-1 homolog C
著者Yan, X, Dong, A, Bountra, C, Edwards, A.M, Arrowsmith, C.H, Min, J.R, Dong, C, Structural Genomics Consortium (SGC)
登録日2020-06-26
公開日2020-10-14
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.03 Å)
主引用文献Molecular basis for ubiquitin ligase CRL2 FEM1C -mediated recognition of C-degron.
Nat.Chem.Biol., 17, 2021
3OD5
DownloadVisualize
BU of 3od5 by Molmil
Crystal structure of active caspase-6 bound with Ac-VEID-CHO
分子名称: CACODYLATE ION, Caspase-6, peptide aldehyde inhibitor AC-VEID-CHO
著者Wang, X.-J, Liu, X, Wang, K.-T, Cao, Q, Su, X.-D.
登録日2010-08-11
公開日2010-10-27
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal structures of human caspase 6 reveal a new mechanism for intramolecular cleavage self-activation
Embo Rep., 11, 2010
5VAE
DownloadVisualize
BU of 5vae by Molmil
Crystal structure of accessory secretion protein 1 and 3
分子名称: Accessory Sec system protein Asp1, Accessory Sec system protein Asp3
著者Chen, Y, Rapoport, T.A, Jeffrey, P.D.
登録日2017-03-25
公開日2018-02-21
最終更新日2019-11-20
実験手法X-RAY DIFFRACTION (3.106 Å)
主引用文献Unraveling the sequence of cytosolic reactions in the export of GspB adhesin fromStreptococcus gordonii.
J. Biol. Chem., 293, 2018
5VAF
DownloadVisualize
BU of 5vaf by Molmil
Crystal structure of accessory secretion protein 1
分子名称: Accessory Sec system protein Asp1
著者Chen, Y, Rapoport, T.A, Jeffrey, P.D.
登録日2017-03-25
公開日2018-02-21
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.771 Å)
主引用文献Unraveling the sequence of cytosolic reactions in the export of GspB adhesin fromStreptococcus gordonii.
J. Biol. Chem., 293, 2018
6VK3
DownloadVisualize
BU of 6vk3 by Molmil
CryoEM structure of Hrd3/Yos9 complex
分子名称: Hrd3, Protein OS-9 homolog
著者Wu, X, Rapoport, T.A.
登録日2020-01-18
公開日2020-04-29
最終更新日2020-05-06
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Structural basis of ER-associated protein degradation mediated by the Hrd1 ubiquitin ligase complex.
Science, 368, 2020
6VJZ
DownloadVisualize
BU of 6vjz by Molmil
CryoEM structure of Hrd1-Usa1/Der1/Hrd3 complex of the expected topology
分子名称: Degradation in the endoplasmic reticulum protein 1, ERAD-associated E3 ubiquitin-protein ligase HRD1, ERAD-associated E3 ubiquitin-protein ligase component HRD3, ...
著者Wu, X, Rapoport, T.A.
登録日2020-01-18
公開日2020-04-29
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (4.3 Å)
主引用文献Structural basis of ER-associated protein degradation mediated by the Hrd1 ubiquitin ligase complex.
Science, 368, 2020
6VK1
DownloadVisualize
BU of 6vk1 by Molmil
CryoEM structure of Hrd1/Hrd3 part from Hrd1-Usa1/Der1/Hrd3 complex
分子名称: ERAD-associated E3 ubiquitin-protein ligase HRD1, ERAD-associated E3 ubiquitin-protein ligase component HRD3
著者Wu, X, Rapoport, T.A.
登録日2020-01-18
公開日2020-04-29
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Structural basis of ER-associated protein degradation mediated by the Hrd1 ubiquitin ligase complex.
Science, 368, 2020
6VK0
DownloadVisualize
BU of 6vk0 by Molmil
CryoEM structure of Hrd1-Usa1/Der1/Hrd3 of the flipped topology
分子名称: Degradation in the endoplasmic reticulum protein 1, ERAD-associated E3 ubiquitin-protein ligase HRD1, ERAD-associated E3 ubiquitin-protein ligase component HRD3, ...
著者Wu, X, Rapoport, T.A.
登録日2020-01-18
公開日2020-04-29
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (4.1 Å)
主引用文献Structural basis of ER-associated protein degradation mediated by the Hrd1 ubiquitin ligase complex.
Science, 368, 2020
3L8A
DownloadVisualize
BU of 3l8a by Molmil
Crystal structure of MetC from Streptococcus mutans
分子名称: PYRIDOXAL-5'-PHOSPHATE, Putative aminotransferase, probable beta-cystathionase
著者Wang, X.J, Fu, T.M, Su, X.D.
登録日2009-12-30
公開日2011-01-12
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.539 Å)
主引用文献Crystal structure of MetC from Streptococcus mutans
To be Published
7XYT
DownloadVisualize
BU of 7xyt by Molmil
Crystal structure of ZER1 bound to AFLH degron
分子名称: Protein zer-1 homolog
著者Dong, C, Yan, X, Li, Y.
登録日2022-06-02
公開日2022-12-28
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献CRL2 ZER1/ZYG11B recognizes small N-terminal residues for degradation.
Nat Commun, 13, 2022
5IQL
DownloadVisualize
BU of 5iql by Molmil
Crystal structure of YEATS2 YEATS bound to H3K27cr peptide
分子名称: Histone H3.1, YEATS domain-containing protein 2
著者Li, H, Zhao, D, Guan, H.
登録日2016-03-11
公開日2016-07-20
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献YEATS2 is a selective histone crotonylation reader.
Cell Res., 26, 2016
7JYA
DownloadVisualize
BU of 7jya by Molmil
Crystal structure of E3 ligase in complex with peptide
分子名称: ASN-ARG-ARG-ARG-ARG-TRP-ARG-GLU-ARG-GLN-ARG, Protein fem-1 homolog C, UNKNOWN ATOM OR ION
著者Yan, X, Dong, A, Bountra, C, Edwards, A.M, Arrowsmith, C.H, Min, J.R, Dong, C, Structural Genomics Consortium (SGC)
登録日2020-08-30
公開日2020-10-14
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.46 Å)
主引用文献Molecular basis for ubiquitin ligase CRL2 FEM1C -mediated recognition of C-degron.
Nat.Chem.Biol., 17, 2021
8J4A
DownloadVisualize
BU of 8j4a by Molmil
Crystal structure of OY phytoplasma SAP05 in complex with AtRPN10
分子名称: 26S proteasome non-ATPase regulatory subunit 4 homolog, Sequence-variable mosaic (SVM) signal sequence domain-containing protein
著者Dong, C, Yan, X, Yuan, X.
登録日2023-04-19
公開日2024-02-28
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.97 Å)
主引用文献Molecular basis of SAP05-mediated ubiquitin-independent proteasomal degradation of transcription factors.
Nat Commun, 15, 2024
8J4B
DownloadVisualize
BU of 8j4b by Molmil
Crystal structure of OY phytoplasma SAP05 in complex with AtSPL13
分子名称: Sequence-variable mosaic (SVM) signal sequence domain-containing protein, Squamosa promoter-binding-like protein 13A, ZINC ION
著者Dong, C, Yan, X, Yuan, X.
登録日2023-04-19
公開日2024-02-28
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Molecular basis of SAP05-mediated ubiquitin-independent proteasomal degradation of transcription factors.
Nat Commun, 15, 2024
8J49
DownloadVisualize
BU of 8j49 by Molmil
Crystal structure of OY phytoplasma SAP05 in complex with AtSPL5
分子名称: Sequence-variable mosaic (SVM) signal sequence domain-containing protein, Squamosa promoter-binding-like protein 5, ZINC ION
著者Dong, C, Yan, X, Yuan, X.
登録日2023-04-19
公開日2024-02-28
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.66 Å)
主引用文献Molecular basis of SAP05-mediated ubiquitin-independent proteasomal degradation of transcription factors.
Nat Commun, 15, 2024
8J48
DownloadVisualize
BU of 8j48 by Molmil
Crystal structure of OY phytoplasma SAP05 in complex with AtGATA18
分子名称: GATA transcription factor 18, Sequence-variable mosaic (SVM) signal sequence domain-containing protein, ZINC ION
著者Dong, C, Yan, X, Yuan, X.
登録日2023-04-19
公開日2024-02-28
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.94 Å)
主引用文献Molecular basis of SAP05-mediated ubiquitin-independent proteasomal degradation of transcription factors.
Nat Commun, 15, 2024
6MIN
DownloadVisualize
BU of 6min by Molmil
Crystal structure of Taf14 YEATS domain G82A mutant in complex with histone H3K9cr
分子名称: Histone H3K9cr, Transcription initiation factor TFIID subunit 14
著者Klein, B.J, Andrews, F.H, Kutateladze, T.G.
登録日2018-09-19
公開日2018-11-14
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural insights into the pi-pi-pi stacking mechanism and DNA-binding activity of the YEATS domain.
Nat Commun, 9, 2018
6MIU
DownloadVisualize
BU of 6miu by Molmil
Crystal structure of p62 ZZ domain in complex with Arg-Glu peptide
分子名称: Sequestosome-1, Arg-Glu peptide chimera, ZINC ION
著者Ahn, J, Zhang, Y, Kutateladze, T.G.
登録日2018-09-20
公開日2018-10-31
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献ZZ-dependent regulation of p62/SQSTM1 in autophagy.
Nat Commun, 9, 2018
6MIM
DownloadVisualize
BU of 6mim by Molmil
Crystal structure of AF9 YEATS domain Y78W mutant in complex with histone H3K9cr
分子名称: Histone H3K9cr, Protein AF-9
著者Vann, K.R, Klein, B.J, Kutateladze, T.G.
登録日2018-09-19
公開日2018-11-14
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.525 Å)
主引用文献Structural insights into the pi-pi-pi stacking mechanism and DNA-binding activity of the YEATS domain.
Nat Commun, 9, 2018
6MIO
DownloadVisualize
BU of 6mio by Molmil
Crystal structure of Taf14 YEATS domain in complex with histone H3K9pr
分子名称: Histone H3K9pr, Transcription initiation factor TFIID subunit 14
著者Klein, B.J, Andrews, F.H, Vann, K.R, Kutateladze, T.G.
登録日2018-09-19
公開日2018-11-14
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Structural insights into the pi-pi-pi stacking mechanism and DNA-binding activity of the YEATS domain.
Nat Commun, 9, 2018
6MIQ
DownloadVisualize
BU of 6miq by Molmil
Crystal structure of Taf14 YEATS domain in complex with histone H3K9bu
分子名称: Histone H3K9bu, Transcription initiation factor TFIID subunit 14
著者Klein, B.J, Andrews, F.H, Vann, K.R, Kutateladze, T.G.
登録日2018-09-19
公開日2018-11-14
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Structural insights into the pi-pi-pi stacking mechanism and DNA-binding activity of the YEATS domain.
Nat Commun, 9, 2018

222926

件を2024-07-24に公開中

PDB statisticsPDBj update infoContact PDBjnumon