Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
4WK0
DownloadVisualize
BU of 4wk0 by Molmil
Metal Ion and Ligand Binding of Integrin
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ARG-GLY-ASP, ...
Authors:Xia, W, Springer, T.A.
Deposit date:2014-10-01
Release date:2014-12-03
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Metal ion and ligand binding of integrin alpha 5 beta 1.
Proc.Natl.Acad.Sci.USA, 111, 2014
4WJK
DownloadVisualize
BU of 4wjk by Molmil
Metal Ion and Ligand Binding of Integrin
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Xia, W, Springer, T.A.
Deposit date:2014-09-30
Release date:2014-12-03
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Metal ion and ligand binding of integrin alpha 5 beta 1.
Proc.Natl.Acad.Sci.USA, 111, 2014
4WK2
DownloadVisualize
BU of 4wk2 by Molmil
Metal Ion and Ligand Binding of Integrin
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Xia, W, Springer, T.A.
Deposit date:2014-10-01
Release date:2014-12-03
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Metal ion and ligand binding of integrin alpha 5 beta 1.
Proc.Natl.Acad.Sci.USA, 111, 2014
4WK4
DownloadVisualize
BU of 4wk4 by Molmil
Metal Ion and Ligand Binding of Integrin
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ALA-CYS-ARG-GLY-ASP-GLY-TRP-CYS, ...
Authors:Xia, W, Springer, T.A.
Deposit date:2014-10-01
Release date:2014-12-03
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Metal ion and ligand binding of integrin alpha 5 beta 1.
Proc.Natl.Acad.Sci.USA, 111, 2014
2KDX
DownloadVisualize
BU of 2kdx by Molmil
Solution structure of HypA protein
Descriptor: Hydrogenase/urease nickel incorporation protein hypA, ZINC ION
Authors:Xia, W, Li, H, Sze, K.-H.
Deposit date:2009-01-20
Release date:2009-10-20
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structure of a nickel chaperone, HypA, from Helicobacter pylori reveals two distinct metal binding sites
J.Am.Chem.Soc., 131, 2009
8GQD
DownloadVisualize
BU of 8gqd by Molmil
Complex Structure of Arginine Kinase McsB and McsA from Staphylococcus aureus
Descriptor: Protein-arginine kinase, Protein-arginine kinase activator protein, ZINC ION
Authors:Lu, K, Luo, B, Tao, X, Li, H, Xie, Y, Zhao, Z, Xia, W, Su, Z, Mao, Z.
Deposit date:2022-08-30
Release date:2024-03-06
Method:ELECTRON MICROSCOPY (3.41 Å)
Cite:Complex Structure and Activation Mechanism of Arginine Kinase McsB by McsA
To Be Published
2KR7
DownloadVisualize
BU of 2kr7 by Molmil
solution structure of Helicobacter pylori SlyD
Descriptor: FKBP-type peptidyl-prolyl cis-trans isomerase slyD
Authors:Cheng, T, Li, H, Xia, W, Sze, K, Sun, H.
Deposit date:2009-12-07
Release date:2010-12-15
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:solution structure of Helicobacter pylori SlyD
To be Published
6J2S
DownloadVisualize
BU of 6j2s by Molmil
Structure of HitA bound to gallium from Pseudomonas aeruginosa
Descriptor: Ferric iron-binding periplasmic protein, GALLIUM (III) ION, PHOSPHATE ION
Authors:Guo, Y, Li, H.Y, Sun, H.Z, Xia, W.
Deposit date:2019-01-02
Release date:2020-01-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.73005116 Å)
Cite:Identification and Characterization of a Metalloprotein Involved in Gallium Internalization in Pseudomonas aeruginosa.
Acs Infect Dis., 5, 2019
7D64
DownloadVisualize
BU of 7d64 by Molmil
The crystal structure of SARS-CoV-2 3CLpro with Zinc
Descriptor: 3C-like proteinase, ZINC ION
Authors:Mao, Z.W, Xia, W, Tao, X.
Deposit date:2020-09-29
Release date:2021-09-29
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.450116 Å)
Cite:Inhibition of SARS-CoV-2 replication by zinc gluconate in combination with hinokitiol.
J.Inorg.Biochem., 231, 2022
8JEY
DownloadVisualize
BU of 8jey by Molmil
Cryo-EM structure of alpha-synuclein pS87 fibril
Descriptor: Alpha-synuclein
Authors:Xia, W.C, Sun, Y.P, Liu, C.
Deposit date:2023-05-16
Release date:2024-04-17
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Phosphorylation and O-GlcNAcylation at the same alpha-synuclein site generate distinct fibril structures.
Nat Commun, 15, 2024
8JEX
DownloadVisualize
BU of 8jex by Molmil
Cryo-EM structure of alpha-synuclein gS87 fibril
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Alpha-synuclein, unverified amino acid chain
Authors:Xia, W.C, Sun, Y.P, Liu, C.
Deposit date:2023-05-16
Release date:2024-04-17
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Phosphorylation and O-GlcNAcylation at the same alpha-synuclein site generate distinct fibril structures.
Nat Commun, 15, 2024
2K4K
DownloadVisualize
BU of 2k4k by Molmil
Solution structure of GSP13 from Bacillus subtilis
Descriptor: General stress protein 13
Authors:Yu, W, Yu, B, Hu, J, Jin, C, Xia, B.
Deposit date:2008-06-13
Release date:2009-05-12
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of GSP13 from Bacillus subtilis exhibits an S1 domain related to cold shock proteins.
J.Biomol.Nmr, 43, 2009
7YPG
DownloadVisualize
BU of 7ypg by Molmil
Cryo-EM structure of amyloid fibril formed by tau (297-391)
Descriptor: Isoform Tau-E of Microtubule-associated protein tau
Authors:Zhang, S.Q, Li, X, Liu, C.
Deposit date:2022-08-03
Release date:2022-12-14
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:Subtle change of fibrillation condition leads to substantial alteration of recombinant Tau fibril structure.
Iscience, 25, 2022
6IVY
DownloadVisualize
BU of 6ivy by Molmil
Crystal structure of iron-bound HitA from Pseudomonas aeruginosa
Descriptor: FE (III) ION, PHOSPHATE ION, Periplasmic Ferric iron-binding Protein HitA
Authors:Zhang, Z.R, Li, H.Y.
Deposit date:2018-12-04
Release date:2019-12-04
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.9999994 Å)
Cite:Identification and Characterization of a Metalloprotein Involved in Gallium Internalization in Pseudomonas aeruginosa.
Acs Infect Dis., 5, 2019
7BX7
DownloadVisualize
BU of 7bx7 by Molmil
Cryo-EM structure of amyloid fibril formed by hnRNPA1 low complexity domain
Descriptor: Heterogeneous nuclear ribonucleoprotein A1
Authors:Sun, Y.P, Zhao, K, Liu, C, Li, D.
Deposit date:2020-04-17
Release date:2020-11-18
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:The nuclear localization sequence mediates hnRNPA1 amyloid fibril formation revealed by cryoEM structure.
Nat Commun, 11, 2020
8GZ9
DownloadVisualize
BU of 8gz9 by Molmil
Cryo-EM structure of Abeta2 fibril polymorph2
Descriptor: peptide self-assembled antimicrobial fibrils
Authors:Xia, W.C, Zhang, M.M, Liu, C.
Deposit date:2022-09-26
Release date:2023-09-20
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (2.62 Å)
Cite:Engineering of antimicrobial peptide fibrils with feedback degradation of bacterial-secreted enzymes.
Chem Sci, 14, 2023
8GZ8
DownloadVisualize
BU of 8gz8 by Molmil
Cryo-EM structure of Abeta2 fibril polymorph1
Descriptor: peptide self-assembled antimicrobial fibrils
Authors:Xia, W.C, Zhang, M.M, Liu, C.
Deposit date:2022-09-26
Release date:2023-09-20
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (2.35 Å)
Cite:Engineering of antimicrobial peptide fibrils with feedback degradation of bacterial-secreted enzymes.
Chem Sci, 14, 2023
3O36
DownloadVisualize
BU of 3o36 by Molmil
Crystal structure of TRIM24 PHD-Bromo complexed with H4(14-19)K16ac peptide
Descriptor: Histone H4, Transcription intermediary factor 1-alpha, ZINC ION
Authors:Wang, Z, Patel, D.J.
Deposit date:2010-07-23
Release date:2010-12-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:TRIM24 links a non-canonical histone signature to breast cancer.
Nature, 468, 2010
3O35
DownloadVisualize
BU of 3o35 by Molmil
Crystal structure of TRIM24 PHD-Bromo complexed with H3(23-31)K27ac peptide
Descriptor: Histone H3.1, Transcription intermediary factor 1-alpha, ZINC ION
Authors:Wang, Z, Patel, D.J.
Deposit date:2010-07-23
Release date:2010-12-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:TRIM24 links a non-canonical histone signature to breast cancer.
Nature, 468, 2010
3O33
DownloadVisualize
BU of 3o33 by Molmil
Crystal structure of TRIM24 PHD-Bromo in the free state
Descriptor: Transcription intermediary factor 1-alpha, ZINC ION
Authors:Wang, Z, Patel, D.J.
Deposit date:2010-07-23
Release date:2010-12-15
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:TRIM24 links a non-canonical histone signature to breast cancer.
Nature, 468, 2010
3O34
DownloadVisualize
BU of 3o34 by Molmil
Crystal structure of TRIM24 PHD-Bromo complexed with H3(13-32)K23ac peptide
Descriptor: BIOTIN, Histone H3.1, Transcription intermediary factor 1-alpha, ...
Authors:Wang, Z, Patel, D.J.
Deposit date:2010-07-23
Release date:2010-12-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:TRIM24 links a non-canonical histone signature to breast cancer.
Nature, 468, 2010
3O37
DownloadVisualize
BU of 3o37 by Molmil
Crystal structure of TRIM24 PHD-Bromo complexed with H3(1-10)K4 peptide
Descriptor: Histone H3.1, Transcription intermediary factor 1-alpha, ZINC ION
Authors:Wang, Z, Patel, D.J.
Deposit date:2010-07-23
Release date:2010-12-15
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2 Å)
Cite:TRIM24 links a non-canonical histone signature to breast cancer.
Nature, 468, 2010
6IIU
DownloadVisualize
BU of 6iiu by Molmil
Crystal structure of the human thromboxane A2 receptor bound to ramatroban
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, 3-[(3R)-3-[(4-fluorophenyl)sulfonylamino]-1,2,3,4-tetrahydrocarbazol-9-yl]propanoic acid, CHOLESTEROL, ...
Authors:Fan, H, Zhao, Q, Wu, B.
Deposit date:2018-10-07
Release date:2018-12-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis for ligand recognition of the human thromboxane A2receptor.
Nat. Chem. Biol., 15, 2019
6IIV
DownloadVisualize
BU of 6iiv by Molmil
Crystal structure of the human thromboxane A2 receptor bound to daltroban
Descriptor: 2-[4-[2-[(4-chlorophenyl)sulfonylamino]ethyl]phenyl]ethanoic acid, CHOLESTEROL, GLYCEROL, ...
Authors:Fan, H, Zhao, Q, Wu, B.
Deposit date:2018-10-07
Release date:2018-12-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural basis for ligand recognition of the human thromboxane A2receptor.
Nat. Chem. Biol., 15, 2019
7V3T
DownloadVisualize
BU of 7v3t by Molmil
Solution structure of thrombin binding aptamer G-quadruplex bound a self-adaptive small molecule with rotated ligands
Descriptor: 11,13-bis(fluoranyl)-8-(1-methyl-3-pyridin-2-yl-imidazol-2-yl)-8-(1-methyl-3-pyridin-2-yl-imidazol-2-yl)-7$l^{4}-aza-8$l^{4}-platinatricyclo[7.4.0.0^{2,7}]trideca-1(9),2(7),3,5,10,12-hexaene, TBA G4 DNA (5'-D(*GP*GP*TP*TP*GP*GP*TP*GP*TP*GP*GP*TP*TP*GP*G)-3')
Authors:Liu, W, Zhu, B.C, Mao, Z.W.
Deposit date:2021-08-11
Release date:2022-09-28
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution structure of a thrombin binding aptamer complex with a non-planar platinum(ii) compound.
Chem Sci, 13, 2022

 

123>

220472

PDB entries from 2024-05-29

PDB statisticsPDBj update infoContact PDBjnumon