Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
6KNY
DownloadVisualize
BU of 6kny by Molmil
Structure of Amuc_1100 without transmembrane region from Akkermansia muciniphila
Descriptor: Protein Amuc_1100
Authors:Mou, L.Q, Xiao, Q.J, Deng, D.
Deposit date:2019-08-07
Release date:2020-04-15
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of monomeric Amuc_1100 from Akkermansia muciniphila.
Acta Crystallogr.,Sect.F, 76, 2020
4JRC
DownloadVisualize
BU of 4jrc by Molmil
Distal Stem I region from G. kaustophilus glyQS T box RNA
Descriptor: Distal Stem I region of the glyQS T box leader RNA, MAGNESIUM ION
Authors:Grigg, J.C, Ke, A.
Deposit date:2013-03-21
Release date:2013-04-24
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.673 Å)
Cite:T box RNA decodes both the information content and geometry of tRNA to affect gene expression.
Proc.Natl.Acad.Sci.USA, 110, 2013
6KIW
DownloadVisualize
BU of 6kiw by Molmil
Cryo-EM structure of human MLL3-ubNCP complex (4.0 angstrom)
Descriptor: DNA (144-MER), DNA (145-MER), Histone H2A, ...
Authors:Huang, J, Xue, H, Yao, T.
Deposit date:2019-07-20
Release date:2019-09-11
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Structural basis of nucleosome recognition and modification by MLL methyltransferases.
Nature, 573, 2019
6KUU
DownloadVisualize
BU of 6kuu by Molmil
Structure of influenza D virus polymerase bound to vRNA promoter in Mode B conformation (Class B3)
Descriptor: 3'-vRNA, 5'-vRNA, Polymerase 3, ...
Authors:Peng, Q, Peng, R, Qi, J, Gao, G.F, Shi, Y.
Deposit date:2019-09-02
Release date:2019-12-11
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Structure of influenza D virus polymerase bound to vRNA promoter in Mode B conformation (Class B3)
To Be Published
4JO1
DownloadVisualize
BU of 4jo1 by Molmil
Crystal structure of rabbit mAb R56 Fab in complex with V3 crown of HIV-1 JR-FL gp120
Descriptor: CALCIUM ION, gp120, monoclonal anti-HIV-1 gp120 V3 antibody R56 heavy chain, ...
Authors:Pan, R.M, Kong, X.P.
Deposit date:2013-03-16
Release date:2013-07-31
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.033 Å)
Cite:Rabbit Anti-HIV-1 Monoclonal Antibodies Raised by Immunization Can Mimic the Antigen-Binding Modes of Antibodies Derived from HIV-1-Infected Humans.
J.Virol., 87, 2013
4ZTO
DownloadVisualize
BU of 4zto by Molmil
Fab/epitope complex structure of rabbit monoclonal antibody R53 targeting an epitope in HIV-1 gp120 C4 region
Descriptor: Epitope of rabbit monoclonal antibody R53, RABBIT MONOCLONAL ANTIBODY R53 FAB HEAVY CHAIN, RABBIT MONOCLONAL ANTIBODY R53 FAB LIGHT CHAIN
Authors:Pan, R, Kong, X.-P.
Deposit date:2015-05-14
Release date:2015-08-19
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural analysis of a novel rabbit monoclonal antibody R53 targeting an epitope in HIV-1 gp120 C4 region critical for receptor and co-receptor binding.
Emerg Microbes Infect, 4, 2015
6ENH
DownloadVisualize
BU of 6enh by Molmil
Crystal structure of the 43K ATPase domain of Thermus thermophilus gyrase B in complex with an aminocoumarin
Descriptor: Coumermycin A1, DNA gyrase subunit B, IMIDAZOLE
Authors:Vanden Broeck, A, McEwen, A.G, Lamour, V.
Deposit date:2017-10-04
Release date:2019-04-10
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Structural Basis for DNA Gyrase Interaction with Coumermycin A1.
J.Med.Chem., 62, 2019
3J9J
DownloadVisualize
BU of 3j9j by Molmil
Structure of the capsaicin receptor, TRPV1, determined by single particle electron cryo-microscopy
Descriptor: Transient receptor potential cation channel subfamily V member 1
Authors:Wang, R.Y.-R, Barad, B.A, Fraser, J.S, DiMaio, F.
Deposit date:2015-02-02
Release date:2015-09-02
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (3.275 Å)
Cite:EMRinger: side chain-directed model and map validation for 3D cryo-electron microscopy.
Nat.Methods, 12, 2015
6A8O
DownloadVisualize
BU of 6a8o by Molmil
Crystal structures of the serine protease domain of murine plasma kallikrein with peptide inhibitor mupain-1-16
Descriptor: Plasma kallikrein, alpha-D-mannopyranose, peptide inhibitor,, ...
Authors:Xu, M, Jiang, L, Huang, M.
Deposit date:2018-07-09
Release date:2019-07-10
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.77 Å)
Cite:Crystal structure of plasma kallikrein reveals the unusual flexibility of the S1 pocket triggered by Glu217.
Febs Lett., 592, 2018
7M6M
DownloadVisualize
BU of 7m6m by Molmil
Full length alpha1 Glycine receptor in presence of 32uM Tetrahydrocannabinol
Descriptor: (6aR,10aR)-6,6,9-trimethyl-3-pentyl-6a,7,8,10a-tetrahydro-6H-benzo[c]chromen-1-ol, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Glycine receptor subunit alphaZ1
Authors:Kumar, A, Chakrapani, S.
Deposit date:2021-03-26
Release date:2022-08-03
Last modified:2022-09-07
Method:ELECTRON MICROSCOPY (3.09 Å)
Cite:Structural basis for cannabinoid-induced potentiation of alpha1-glycine receptors in lipid nanodiscs.
Nat Commun, 13, 2022
6L5D
DownloadVisualize
BU of 6l5d by Molmil
Crystal structure of the gas vesicle protein GvpF from Anabaena sp. PCC7120
Descriptor: Gas vesicle protein
Authors:Cai, K, Li, Q.
Deposit date:2019-10-23
Release date:2020-09-02
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:The model cyanobacteria Anabaena sp. PCC 7120 possess an intact but partially degenerated gene cluster encoding gas vesicles.
Bmc Microbiol., 20, 2020
6AX7
DownloadVisualize
BU of 6ax7 by Molmil
The crystal structure of a lysyl hydroxylase from Acanthamoeba polyphaga mimivirus
Descriptor: FE (II) ION, Procollagen lysyl hydroxylase and glycosyltransferase
Authors:Guo, H, Tsai, C, Miller, M.D, Alvarado, S, Tainer, J.A, Phillips Jr, G.N, Kurie, J.M.
Deposit date:2017-09-06
Release date:2018-02-21
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.002 Å)
Cite:Pro-metastatic collagen lysyl hydroxylase dimer assemblies stabilized by Fe2+-binding.
Nat Commun, 9, 2018
6IJH
DownloadVisualize
BU of 6ijh by Molmil
Crystal structure of PDE10 in complex with inhibitor AF-399/14387019
Descriptor: 2-[2-(4-phenyl-5-sulfanylidene-4,5-dihydro-1H-1,2,4-triazol-3-yl)ethyl]-1H-benzo[de]isoquinoline-1,3(2H)-dione, MAGNESIUM ION, ZINC ION, ...
Authors:Huang, Y.Y, Yu, Y.F, Zhang, C, Wu, D, Wu, Y, Luo, H.B.
Deposit date:2018-10-10
Release date:2019-04-10
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Validation of Phosphodiesterase-10 as a Novel Target for Pulmonary Arterial Hypertension via Highly Selective and Subnanomolar Inhibitors.
J. Med. Chem., 62, 2019
6M67
DownloadVisualize
BU of 6m67 by Molmil
The Cryo-EM Structure of Human Pannexin 1 with D376E/D379E Mutation
Descriptor: Pannexin-1
Authors:Jin, Q, Bo, Z, Xiang, Z, Xiaokang, Z, Ye, S.
Deposit date:2020-03-13
Release date:2020-04-15
Last modified:2020-05-13
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Cryo-EM structures of human pannexin 1 channel.
Cell Res., 30, 2020
4JO2
DownloadVisualize
BU of 4jo2 by Molmil
Crystal structure of rabbit mAb R56 Fab in complex with V3 crown of HIV-1 Consensus A gp120
Descriptor: CALCIUM ION, gp120, monoclonal anti-HIV-1 gp120 V3 antibody R56 heavy chain, ...
Authors:Pan, R.M, Kong, X.P.
Deposit date:2013-03-16
Release date:2013-07-31
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Rabbit Anti-HIV-1 Monoclonal Antibodies Raised by Immunization Can Mimic the Antigen-Binding Modes of Antibodies Derived from HIV-1-Infected Humans.
J.Virol., 87, 2013
4ZTP
DownloadVisualize
BU of 4ztp by Molmil
Fab structure of rabbit monoclonal antibody R53 targeting an epitope in HIV-1 gp120 C4 region
Descriptor: Heavy chain of Fab fragment of rabbit monoclonal antibody R53, Light chain of Fab fragment of rabbit monoclonal antibody R53
Authors:Pan, R, Kong, X.-P.
Deposit date:2015-05-14
Release date:2015-08-19
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Structural analysis of a novel rabbit monoclonal antibody R53 targeting an epitope in HIV-1 gp120 C4 region critical for receptor and co-receptor binding.
Emerg Microbes Infect, 4, 2015
6AX6
DownloadVisualize
BU of 6ax6 by Molmil
The crystal structure of a lysyl hydroxylase from Acanthamoeba polyphaga mimivirus
Descriptor: FE (II) ION, IODIDE ION, Procollagen lysyl hydroxylase and glycosyltransferase
Authors:Guo, H, Tsai, C, Miller, M.D, Alvarado, S, Tainer, J.A, Phillips Jr, G.N, Kurie, J.M.
Deposit date:2017-09-06
Release date:2018-02-21
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.241 Å)
Cite:Pro-metastatic collagen lysyl hydroxylase dimer assemblies stabilized by Fe2+-binding.
Nat Commun, 9, 2018
3QWA
DownloadVisualize
BU of 3qwa by Molmil
Crystal structure of Saccharomyces cerevisiae Zeta-crystallin-like quinone oxidoreductase Zta1
Descriptor: Probable quinone oxidoreductase
Authors:Guo, P.C, Ma, X.X, Bao, Z.Z, Chen, Y.X, Zhou, C.Z.
Deposit date:2011-02-27
Release date:2012-02-08
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural insights into the cofactor-assisted substrate recognition of yeast quinone oxidoreductase Zta1
J.Struct.Biol., 176, 2011
6ENG
DownloadVisualize
BU of 6eng by Molmil
Crystal structure of the 43K ATPase domain of Escherichia coli gyrase B in complex with an aminocoumarin
Descriptor: CHLORIDE ION, Coumermycin A1, DNA gyrase subunit B, ...
Authors:Vanden Broeck, A, McEwen, A.G, Lamour, V.
Deposit date:2017-10-04
Release date:2019-04-10
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural Basis for DNA Gyrase Interaction with Coumermycin A1.
J.Med.Chem., 62, 2019
6KIV
DownloadVisualize
BU of 6kiv by Molmil
Cryo-EM structure of human MLL1-ubNCP complex (4.0 angstrom)
Descriptor: DNA (145-MER), Histone H2A, Histone H2B 1.1, ...
Authors:Huang, J, Xue, H, Yao, T.
Deposit date:2019-07-20
Release date:2019-09-11
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Structural basis of nucleosome recognition and modification by MLL methyltransferases.
Nature, 573, 2019
6KIX
DownloadVisualize
BU of 6kix by Molmil
Cryo-EM structure of human MLL1-NCP complex, binding mode1
Descriptor: DNA (145-MER), GLUTAMINE, Histone H2A, ...
Authors:Huang, J, Xue, H, Yao, T.
Deposit date:2019-07-20
Release date:2019-09-11
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Structural basis of nucleosome recognition and modification by MLL methyltransferases.
Nature, 573, 2019
7M6N
DownloadVisualize
BU of 7m6n by Molmil
Full length alpha1 Glycine receptor in presence of 0.1mM Glycine
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCINE, Glycine receptor subunit alphaZ1
Authors:Kumar, A, Chakrapani, S.
Deposit date:2021-03-26
Release date:2022-08-03
Last modified:2022-09-07
Method:ELECTRON MICROSCOPY (2.61 Å)
Cite:Structural basis for cannabinoid-induced potentiation of alpha1-glycine receptors in lipid nanodiscs.
Nat Commun, 13, 2022
7M6Q
DownloadVisualize
BU of 7m6q by Molmil
Full length alpha1 Glycine receptor in presence of 1mM Glycine and 32uM Tetrahydrocannabinol State 1
Descriptor: (6aR,10aR)-6,6,9-trimethyl-3-pentyl-6a,7,8,10a-tetrahydro-6H-benzo[c]chromen-1-ol, 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCINE, ...
Authors:Kumar, A, Chakrapani, S.
Deposit date:2021-03-26
Release date:2022-08-03
Last modified:2022-09-07
Method:ELECTRON MICROSCOPY (2.91 Å)
Cite:Structural basis for cannabinoid-induced potentiation of alpha1-glycine receptors in lipid nanodiscs.
Nat Commun, 13, 2022
7M6R
DownloadVisualize
BU of 7m6r by Molmil
Full length alpha1 Glycine receptor in presence of 1mM Glycine and 32uM Tetrahydrocannabinol State 2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCINE, Glycine receptor subunit alphaZ1
Authors:Kumar, A, Chakrapani, S.
Deposit date:2021-03-26
Release date:2022-08-03
Last modified:2022-09-07
Method:ELECTRON MICROSCOPY (3.57 Å)
Cite:Structural basis for cannabinoid-induced potentiation of alpha1-glycine receptors in lipid nanodiscs.
Nat Commun, 13, 2022
7M6S
DownloadVisualize
BU of 7m6s by Molmil
Full length alpha1 Glycine receptor in presence of 1mM Glycine and 32uM Tetrahydrocannabinol State 3
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCINE, Glycine receptor subunit alphaZ1
Authors:Kumar, A, Chakrapani, S.
Deposit date:2021-03-26
Release date:2022-08-03
Last modified:2022-09-07
Method:ELECTRON MICROSCOPY (3.61 Å)
Cite:Structural basis for cannabinoid-induced potentiation of alpha1-glycine receptors in lipid nanodiscs.
Nat Commun, 13, 2022

223532

PDB entries from 2024-08-07

PDB statisticsPDBj update infoContact PDBjnumon