Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
8WHH
DownloadVisualize
BU of 8whh by Molmil
Crystal structure of Se-Met derivative CLASP2 in complex with CLIP170
Descriptor: CLIP-associating protein 2, CLIP1 protein
Authors:Jin, G, Wei, Z.
Deposit date:2023-09-23
Release date:2024-08-28
Method:X-RAY DIFFRACTION (3.801 Å)
Cite:CLASP-mediated competitive binding in protein condensates directs microtubule growth.
Nat Commun, 15, 2024
7UJD
DownloadVisualize
BU of 7ujd by Molmil
PSMD2 Structure bound to MC1 and Fab8/14
Descriptor: 26S proteasome non-ATPase regulatory subunit 2, ACY-PHE-PRO-ASP-VAL-SAR-LEU-HIS-ARG-TYR-TRP-GLY-TRP-ASP-CYS-GLY-NH2, Fab 14 HC CDRs, ...
Authors:Johnson, M.C, Bashore, C, Ciferri, C, Dueber, E.C.
Deposit date:2022-03-30
Release date:2023-01-11
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:Targeted degradation via direct 26S proteasome recruitment.
Nat.Chem.Biol., 19, 2023
7UIH
DownloadVisualize
BU of 7uih by Molmil
PSMD2 Structure
Descriptor: 26S proteasome non-ATPase regulatory subunit 2, Fab 14 HC CDRs, Fab 14 LC CDRs, ...
Authors:Johnson, M.C, Bashore, C, Ciferri, C, Dueber, E.C.
Deposit date:2022-03-29
Release date:2023-01-11
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Targeted degradation via direct 26S proteasome recruitment.
Nat.Chem.Biol., 19, 2023
8WHK
DownloadVisualize
BU of 8whk by Molmil
Crystal structure of CLASP2 in complex with LL5beta
Descriptor: CHLORIDE ION, CLIP-associating protein 2, Pleckstrin homology-like domain family B member 2
Authors:Jia, X, Wei, Z.
Deposit date:2023-09-23
Release date:2024-08-28
Method:X-RAY DIFFRACTION (2.401 Å)
Cite:CLASP-mediated competitive binding in protein condensates directs microtubule growth.
Nat Commun, 15, 2024
8WHJ
DownloadVisualize
BU of 8whj by Molmil
Crystal structure of CLASP2 TOG4 fused with LL5beta
Descriptor: CHLORIDE ION, CLIP-associating protein 2,Pleckstrin homology-like domain family B member 2, DI(HYDROXYETHYL)ETHER
Authors:Jia, X, Wei, Z.
Deposit date:2023-09-23
Release date:2024-08-28
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:CLASP-mediated competitive binding in protein condensates directs microtubule growth.
Nat Commun, 15, 2024
8WHL
DownloadVisualize
BU of 8whl by Molmil
Crystal structure of CLASP2 in complex with CENP-E
Descriptor: ACETATE ION, CLIP-associating protein 2, Centromere-associated protein E, ...
Authors:Jia, X, Wei, Z.
Deposit date:2023-09-23
Release date:2024-08-28
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:CLASP-mediated competitive binding in protein condensates directs microtubule growth.
Nat Commun, 15, 2024
8WHM
DownloadVisualize
BU of 8whm by Molmil
Crystal structure of the ELKS2/LL5beta complex
Descriptor: ERC protein 2, Pleckstrin homology-like domain family B member 2
Authors:Jia, X, Wei, Z.
Deposit date:2023-09-23
Release date:2024-08-28
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:CLASP-mediated competitive binding in protein condensates directs microtubule growth.
Nat Commun, 15, 2024
6SEQ
DownloadVisualize
BU of 6seq by Molmil
Lemur tyrosine kinase 3 (LMTK3)
Descriptor: Serine/threonine-protein kinase LMTK3
Authors:Roe, S.M, Owen, R.
Deposit date:2019-07-30
Release date:2020-11-25
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The structure-function relationship of oncogenic LMTK3.
Sci Adv, 6, 2020
7LH7
DownloadVisualize
BU of 7lh7 by Molmil
Crystal structure of BCL-XL in complex with a benzothiazole-based inhibitor
Descriptor: Bcl-2-like protein 1, N-(1,3-benzothiazol-2-yl)-2-(4-{[(4-{[(2R)-4-(morpholin-4-yl)-1-(phenylsulfanyl)butan-2-yl]amino}-3-[(trifluoromethyl)sulfonyl]phenyl)sulfonyl]carbamoyl}-1,3-thiazol-2-yl)-1,2,3,4-tetrahydroisoquinoline-8-carboxamide
Authors:Judge, R.A, Tao, Z.
Deposit date:2021-01-21
Release date:2021-06-23
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.409 Å)
Cite:Structure-Based Design of A-1293102, a Potent and Selective BCL-XL Inhibitor
ACS Medicinal Chemistry Letters, 12, 2021
6BMD
DownloadVisualize
BU of 6bmd by Molmil
RNA hairpin containing GpppG-oligo to mimic intermediate formed by activated monomer and activated downstream helper
Descriptor: RNA (5'-D(*(GP3))-R(P*CP*AP*CP*CP*UP*CP*A)-3'), RNA (5'-R(P*GP*AP*GP*GP*UP*GP*(LCC)P*(LCC)P*GP*AP*GP*CP*GP*CP*GP*AP*AP*AP*GP*CP*GP*CP*UP*C)-3')
Authors:Zhang, W, Szostak, J.W.
Deposit date:2017-11-14
Release date:2018-02-21
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural Rationale for the Enhanced Catalysis of Nonenzymatic RNA Primer Extension by a Downstream Oligonucleotide.
J. Am. Chem. Soc., 140, 2018
7N1R
DownloadVisualize
BU of 7n1r by Molmil
A novel and unique ATP hydrolysis to AMP by a human Hsp70 BiP
Descriptor: ADENOSINE MONOPHOSPHATE, DI(HYDROXYETHYL)ETHER, Endoplasmic reticulum chaperone BiP, ...
Authors:Yang, J, Musayev, F, Liu, Q.
Deposit date:2021-05-28
Release date:2022-01-12
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:A novel and unique ATP hydrolysis to AMP by a human Hsp70 Binding immunoglobin protein (BiP).
Protein Sci., 31, 2022
7NAM
DownloadVisualize
BU of 7nam by Molmil
LRP6_E1 in complex with Lr-EET-3.5
Descriptor: Low-density lipoprotein receptor-related protein 6, SODIUM ION, Trypsin inhibitor 2, ...
Authors:Hansen, S, Hannoush, R.N.
Deposit date:2021-06-21
Release date:2022-06-29
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Directed evolution identifies high-affinity cystine-knot peptide agonists and antagonists of Wnt/ beta-catenin signaling.
Proc.Natl.Acad.Sci.USA, 119, 2022
5HSO
DownloadVisualize
BU of 5hso by Molmil
Crystal structure of MYCOBACTERIUM TUBERCULOSIS MARR FAMILY PROTEIN Rv2887 complex with DNA
Descriptor: DNA (30-MER), the upstream sequence of Rv0560c, Uncharacterized HTH-type transcriptional regulator Rv2887
Authors:Gao, Y.R, Li, D.F, Wang, D.C, Bi, L.J.
Deposit date:2016-01-26
Release date:2017-02-01
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural analysis of the regulatory mechanism of MarR protein Rv2887 in M. tuberculosis
Sci Rep, 7, 2017
8TMA
DownloadVisualize
BU of 8tma by Molmil
Antibody N3-1 bound to RBD in the up conformation
Descriptor: N3-1 Fab heavy chain, N3-1 Fab light chain, Spike glycoprotein
Authors:Hsieh, C.-L, McLellan, J.S.
Deposit date:2023-07-29
Release date:2024-01-17
Last modified:2024-11-06
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:SARS-COV-2 Omicron variants conformationally escape a rare quaternary antibody binding mode.
Commun Biol, 6, 2023
8U1G
DownloadVisualize
BU of 8u1g by Molmil
Prefusion-stabilized SARS-CoV-2 S2 subunit
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike protein S2
Authors:Hsieh, C.-L, McLellan, J.S.
Deposit date:2023-08-31
Release date:2024-01-24
Last modified:2024-08-07
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Prefusion-stabilized SARS-CoV-2 S2-only antigen provides protection against SARS-CoV-2 challenge.
Nat Commun, 15, 2024
8TM1
DownloadVisualize
BU of 8tm1 by Molmil
Antibody N3-1 bound to RBDs in the up and down conformations
Descriptor: N3-1 Fab heavy chain, N3-1 Fab light chain, Spike glycoprotein
Authors:Hsieh, C.-L, McLellan, J.S.
Deposit date:2023-07-27
Release date:2024-01-17
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (2.79 Å)
Cite:SARS-COV-2 Omicron variants conformationally escape a rare quaternary antibody binding mode.
Commun Biol, 6, 2023
5HSM
DownloadVisualize
BU of 5hsm by Molmil
CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS MARR FAMILY PROTEIN RV2887
Descriptor: SULFATE ION, Uncharacterized HTH-type transcriptional regulator Rv2887
Authors:Gao, Y.R, Li, D.F, Wang, D.C, Bi, L.J.
Deposit date:2016-01-26
Release date:2017-02-01
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural analysis of the regulatory mechanism of MarR protein Rv2887 in M. tuberculosis
Sci Rep, 7, 2017
8TDZ
DownloadVisualize
BU of 8tdz by Molmil
16mer self-complementary duplex RNA with D:U pair sequence 2
Descriptor: COBALT HEXAMMINE(III), RNA
Authors:Fang, Z, Jia, X, Szostak, J.W.
Deposit date:2023-07-05
Release date:2024-06-12
Last modified:2024-06-26
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Diaminopurine in Nonenzymatic RNA Template Copying.
J.Am.Chem.Soc., 146, 2024
8TDY
DownloadVisualize
BU of 8tdy by Molmil
16mer self-complementary duplex RNA with D:U pair sequence 1
Descriptor: MAGNESIUM ION, RNA
Authors:Fang, Z, Jia, X, Szostak, J.W.
Deposit date:2023-07-05
Release date:2024-06-12
Last modified:2024-06-26
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Diaminopurine in Nonenzymatic RNA Template Copying.
J.Am.Chem.Soc., 146, 2024
8TE0
DownloadVisualize
BU of 8te0 by Molmil
16mer self-complementary duplex RNA with D:C pair sequence 1
Descriptor: MAGNESIUM ION, RNA
Authors:Fang, Z, Jia, X, Szostak, J.W.
Deposit date:2023-07-05
Release date:2024-06-12
Last modified:2024-06-26
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:Diaminopurine in Nonenzymatic RNA Template Copying.
J.Am.Chem.Soc., 146, 2024
8TE2
DownloadVisualize
BU of 8te2 by Molmil
16mer self-complementary duplex RNA with D:C pair sequence 2
Descriptor: CALCIUM ION, RNA
Authors:Fang, Z, Jia, X, Szostak, J.W.
Deposit date:2023-07-05
Release date:2024-06-12
Last modified:2024-06-26
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Diaminopurine in Nonenzymatic RNA Template Copying.
J.Am.Chem.Soc., 146, 2024
5X80
DownloadVisualize
BU of 5x80 by Molmil
CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS MARR FAMILY PROTEIN RV2887 COMPLEX WITH SALICYLIC ACID
Descriptor: 2-HYDROXYBENZOIC ACID, SULFATE ION, Uncharacterized HTH-type transcriptional regulator Rv2887
Authors:Gao, Y.R, Li, D.F, Wang, D.C, Bi, L.J.
Deposit date:2017-02-28
Release date:2017-08-09
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural analysis of the regulatory mechanism of MarR protein Rv2887 in M. tuberculosis
Sci Rep, 7, 2017
8VYM
DownloadVisualize
BU of 8vym by Molmil
Soluble ectodomain of human cytomegalovirus (HCMV) glycoprotein B (gB) in the postfusion conformation in complex with 1G2 and 7H3 Fabs
Descriptor: 1G2 Fab Heavy Chain, 1G2 Fab Light Chain, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Sponholtz, M.R, Byrne, P.O, McLellan, J.S.
Deposit date:2024-02-09
Release date:2024-09-18
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structure-based design of a soluble human cytomegalovirus glycoprotein B antigen stabilized in a prefusion-like conformation.
Proc.Natl.Acad.Sci.USA, 121, 2024
8VYN
DownloadVisualize
BU of 8vyn by Molmil
Soluble ectodomain of human cytomegalovirus (HCMV) glycoprotein B (gB) stabilized in a prefusion-like conformation in complex with 1G2 and 7H3, composite map (global and local) and model
Descriptor: 1G2 Fab Heavy Chain, 1G2 Fab Light Chain, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Sponholtz, M.R, Byrne, P.O, McLellan, J.S.
Deposit date:2024-02-09
Release date:2024-09-18
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Structure-based design of a soluble human cytomegalovirus glycoprotein B antigen stabilized in a prefusion-like conformation.
Proc.Natl.Acad.Sci.USA, 121, 2024
8WVB
DownloadVisualize
BU of 8wvb by Molmil
Crystal structure of Lsd18 mutant S195M
Descriptor: CHLORIDE ION, FLAVIN-ADENINE DINUCLEOTIDE, Putative epoxidase LasC
Authors:Liu, N, Xiao, H.L, Chen, X.
Deposit date:2023-10-23
Release date:2023-12-13
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Simultaneous Improvement in the Thermostability and Catalytic Activity of Epoxidase Lsd18 for the Synthesis of Lasalocid A.
Int J Mol Sci, 24, 2023

227111

PDB entries from 2024-11-06

PDB statisticsPDBj update infoContact PDBjnumon