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8R8Q
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BU of 8r8q by Molmil
Lysosomal peptide transporter
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Glycosylated lysosomal membrane protein, Major facilitator superfamily domain-containing protein 1
Authors:Jungnickel, K.E.J, Loew, C.
Deposit date:2023-11-29
Release date:2024-05-01
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (4.08 Å)
Cite:MFSD1 with its accessory subunit GLMP functions as a general dipeptide uniporter in lysosomes
Nature Cell Biology, 2024
8K5Y
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BU of 8k5y by Molmil
Crystal structure of human proMMP-9 catalytic domain in complex with inhibitor
Descriptor: (3-azanyl-4-fluoranyl-5,7,8,9-tetrahydropyrido[4,3-c]azepin-6-yl)-[6-(2-oxidanylpropan-2-yl)-1H-indol-2-yl]methanone, CALCIUM ION, DIHYDROGENPHOSPHATE ION, ...
Authors:Kamitani, M, Mima, M, Nishikawa-Shimono, R.
Deposit date:2023-07-24
Release date:2023-12-06
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:Discovery of novel indole derivatives as potent and selective inhibitors of proMMP-9 activation.
Bioorg.Med.Chem.Lett., 97, 2023
8K5X
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BU of 8k5x by Molmil
Crystal structure of human proMMP-9 catalytic domain in complex with inhibitor
Descriptor: (6-cyclopropyl-1~{H}-indol-2-yl)-(5,7,8,9-tetrahydropyrido[4,3-c]azepin-6-yl)methanone, CALCIUM ION, CHLORIDE ION, ...
Authors:Kamitani, M, Mima, M, Nishikawa-Shimono, R.
Deposit date:2023-07-24
Release date:2023-12-06
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Discovery of novel indole derivatives as potent and selective inhibitors of proMMP-9 activation.
Bioorg.Med.Chem.Lett., 97, 2023
8K5W
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BU of 8k5w by Molmil
Crystal structure of human proMMP-9 catalytic domain in complex with inhibitor
Descriptor: 2-[[5-fluoranyl-7-(methylamino)-1H-indol-2-yl]carbonyl]-N-(2-pyrrol-1-ylethyl)-3,4-dihydro-1H-isoquinoline-7-carboxamide, CALCIUM ION, DIHYDROGENPHOSPHATE ION, ...
Authors:Kamitani, M, Mima, M, Nishikawa-Shimono, R.
Deposit date:2023-07-24
Release date:2023-12-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Discovery of novel indole derivatives as potent and selective inhibitors of proMMP-9 activation.
Bioorg.Med.Chem.Lett., 97, 2023
8K5V
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BU of 8k5v by Molmil
Crystal structure of human proMMP-9 catalytic domain in complex with inhibitor
Descriptor: 6,7-dihydro-4H-[1,3]oxazolo[4,5-c]pyridin-5-yl-(7-ethyl-2H-indazol-3-yl)methanone, CALCIUM ION, DIHYDROGENPHOSPHATE ION, ...
Authors:Kamitani, M, Mima, M, Nishikawa-Shimono, R.
Deposit date:2023-07-24
Release date:2023-12-06
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Discovery of novel indole derivatives as potent and selective inhibitors of proMMP-9 activation.
Bioorg.Med.Chem.Lett., 97, 2023
1TCG
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BU of 1tcg by Molmil
STRUCTURE-ACTIVITY RELATIONSHIPS OF MU-CONOTOXIN GIIIA: STRUCTURE DETERMINATION OF ACTIVE AND INACTIVE SODIUM CHANNEL BLOCKER PEPTIDES BY NMR AND SIMULATED ANNEALING CALCULATIONS
Descriptor: MU-CONOTOXIN GIIIA
Authors:Kohda, D, Lancelin, J.-M, Inagaki, F, Wakamatsu, K.
Deposit date:1992-12-12
Release date:1994-01-31
Last modified:2017-11-29
Method:SOLUTION NMR
Cite:Structure-activity relationships of mu-conotoxin GIIIA: structure determination of active and inactive sodium channel blocker peptides by NMR and simulated annealing calculations.
Biochemistry, 31, 1992
1TCJ
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BU of 1tcj by Molmil
STRUCTURE-ACTIVITY RELATIONSHIPS OF MU-CONOTOXIN GIIIA: STRUCTURE DETERMINATION OF ACTIVE AND INACTIVE SODIUM CHANNEL BLOCKER PEPTIDES BY NMR AND SIMULATED ANNEALING CALCULATIONS
Descriptor: MU-CONOTOXIN GIIIA
Authors:Kohda, D, Lancelin, J.-M, Inagaki, F, Wakamatsu, K.
Deposit date:1992-12-12
Release date:1994-01-31
Last modified:2017-11-29
Method:SOLUTION NMR
Cite:Structure-activity relationships of mu-conotoxin GIIIA: structure determination of active and inactive sodium channel blocker peptides by NMR and simulated annealing calculations.
Biochemistry, 31, 1992
1HJB
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BU of 1hjb by Molmil
CRYSTAL STRUCTURE OF RUNX-1/AML1/CBFALPHA RUNT DOMAIN AND C/EBPBETA BZIP HOMODIMER BOUND TO A DNA FRAGMENT FROM THE CSF-1R PROMOTER
Descriptor: CCAAT/ENHANCER BINDING PROTEIN BETA, DNA (5'-(*CP*CP*GP*CP*AP*AP*CP*CP*AP*CP* AP*GP*AP*GP*TP*TP*TP*GP*GP*AP*AP*AP*TP*CP*TP*T)-3'), DNA (5'-(*GP*AP*AP*GP*AP*TP*TP*TP*CP*CP* AP*AP*AP*CP*TP*CP*TP*GP*TP*GP*GP*TP*TP*GP*CP*G)-3'), ...
Authors:Tahirov, T.H, Ogata, K.
Deposit date:2001-01-11
Release date:2001-03-09
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural Analyses of DNA Recognition by the Aml1/Runx-1 Runt Domain and its Allosteric Control by Cbfbeta
Cell(Cambridge,Mass.), 104, 2001
1HJC
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BU of 1hjc by Molmil
CRYSTAL STRUCTURE OF RUNX-1/AML1/CBFALPHA RUNT DOMAIN BOUND TO A DNA FRAGMENT FROM THE CSF-1R PROMOTER
Descriptor: DNA (5'-(*GP*AP*AP*CP*TP*CP*TP*GP*TP*GP*GP* TP*TP*GP*CP*G)-3'), DNA (5'-(CP*CP*GP*CP*AP*AP*CP*CP*AP*CP*AP* GP*AP*GP*TP*T)-3'), RUNT-RELATED TRANSCRIPTION FACTOR 1
Authors:Tahirov, T.H, Ogata, K.
Deposit date:2001-01-11
Release date:2001-03-09
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Structural Analyses of DNA Recognition by the Aml1/Runx-1 Runt Domain and its Allosteric Control by Cbfbeta
Cell(Cambridge,Mass.), 104, 2001
1IO4
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BU of 1io4 by Molmil
CRYSTAL STRUCTURE OF RUNX-1/AML1/CBFALPHA RUNT DOMAIN-CBFBETA CORE DOMAIN HETERODIMER AND C/EBPBETA BZIP HOMODIMER BOUND TO A DNA FRAGMENT FROM THE CSF-1R PROMOTER
Descriptor: CAAT/ENHANCER BINDING PROTEIN BETA, CORE-BINDING FACTOR, BETA SUBUNIT, ...
Authors:Tahirov, T.H, Ogata, K.
Deposit date:2001-01-10
Release date:2001-03-12
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural analyses of DNA recognition by the AML1/Runx-1 Runt domain and its allosteric control by CBFbeta.
Cell(Cambridge,Mass.), 104, 2001
1TCK
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BU of 1tck by Molmil
STRUCTURE-ACTIVITY RELATIONSHIPS OF MU-CONOTOXIN GIIIA: STRUCTURE DETERMINATION OF ACTIVE AND INACTIVE SODIUM CHANNEL BLOCKER PEPTIDES BY NMR AND SIMULATED ANNEALING CALCULATIONS
Descriptor: MU-CONOTOXIN GIIIA
Authors:Lancelin, J.-M, Kohda, D, Inagaki, F.
Deposit date:1992-12-12
Release date:1994-01-31
Last modified:2017-11-29
Method:SOLUTION NMR
Cite:Structure-activity relationships of mu-conotoxin GIIIA: structure determination of active and inactive sodium channel blocker peptides by NMR and simulated annealing calculations.
Biochemistry, 31, 1992
1TCH
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BU of 1tch by Molmil
STRUCTURE-ACTIVITY RELATIONSHIPS OF MU-CONOTOXIN GIIIA: STRUCTURE DETERMINATION OF ACTIVE AND INACTIVE SODIUM CHANNEL BLOCKER PEPTIDES BY NMR AND SIMULATED ANNEALING CALCULATIONS
Descriptor: MU-CONOTOXIN GIIIA
Authors:Lancelin, J.-M, Kohda, D, Inagaki, F.
Deposit date:1992-12-12
Release date:1994-01-31
Last modified:2017-11-29
Method:SOLUTION NMR
Cite:Structure-activity relationships of mu-conotoxin GIIIA: structure determination of active and inactive sodium channel blocker peptides by NMR and simulated annealing calculations.
Biochemistry, 31, 1992
8K4Z
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BU of 8k4z by Molmil
Crystal structure of human MMP-7 in complex with inhibitor
Descriptor: CALCIUM ION, CHLORIDE ION, IODIDE ION, ...
Authors:Kamitani, M, Mima, M, Oka, Y.
Deposit date:2023-07-20
Release date:2024-04-17
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Discovery of TP0628103: A Selective MMP-7 Inhibitor Based on the Mitigation of OATP Substrate Recognition through Isoelectric Point Shift Strategy
To Be Published
8A51
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BU of 8a51 by Molmil
Crystal structure of HSF2BP-BRME1 complex
Descriptor: 1,2-ETHANEDIOL, Break repair meiotic recombinase recruitment factor 1, CHLORIDE ION, ...
Authors:Miron, S, Legrand, P, Ropars, V, Ghouil, R, Zinn-Justin, S.
Deposit date:2022-06-13
Release date:2023-07-05
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:BRCA2-HSF2BP oligomeric ring disassembly by BRME1 promotes homologous recombination.
Sci Adv, 9, 2023
8A50
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BU of 8a50 by Molmil
Crystal structure of HSF2BP-ALPHA1 tetramer
Descriptor: Heat shock factor 2-binding protein, PHOSPHATE ION
Authors:Miron, S, Legrand, P, Ropars, V, Ghouil, R, Zinn-Justin, S.
Deposit date:2022-06-13
Release date:2023-07-05
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.484 Å)
Cite:BRCA2-HSF2BP oligomeric ring disassembly by BRME1 promotes homologous recombination.
Sci Adv, 9, 2023
7VQ0
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BU of 7vq0 by Molmil
Cryo-EM structure of the SARS-CoV-2 spike protein (2-up RBD) bound to neutralizing nanobodies P86
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Maeda, R, Fujita, J, Konishi, Y, Kazuma, Y, Yamazaki, H, Anzai, I, Yamaguchi, K, Kasai, K, Nagata, K, Yamaoka, Y, Miyakawa, K, Ryo, A, Shirakawa, K, Makino, F, Matsuura, Y, Inoue, T, Imura, A, Namba, K, Takaori-Kondo, A.
Deposit date:2021-10-18
Release date:2022-07-20
Method:ELECTRON MICROSCOPY (3.03 Å)
Cite:A panel of nanobodies recognizing conserved hidden clefts of all SARS-CoV-2 spike variants including Omicron.
Commun Biol, 5, 2022
7VPY
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BU of 7vpy by Molmil
Crystal structure of the neutralizing nanobody P86 against SARS-CoV-2
Descriptor: 1,2-ETHANEDIOL, Nanobody, SULFATE ION
Authors:Maeda, R, Fujita, J, Konishi, Y, Kazuma, Y, Yamazaki, H, Anzai, I, Yamaguchi, K, Kasai, K, Nagata, K, Yamaoka, Y, Miyakawa, K, Ryo, A, Shirakawa, K, Makino, F, Matsuura, Y, Inoue, T, Imura, A, Namba, K, Takaori-Kondo, A.
Deposit date:2021-10-18
Release date:2022-07-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:A panel of nanobodies recognizing conserved hidden clefts of all SARS-CoV-2 spike variants including Omicron.
Commun Biol, 5, 2022
1HSR
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BU of 1hsr by Molmil
BINDING MODE OF BENZHYDROXAMIC ACID TO ARTHROMYCES RAMOSUS PEROXIDASE
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, BENZHYDROXAMIC ACID, CALCIUM ION, ...
Authors:Fukuyama, K, Itakura, H.
Deposit date:1997-07-01
Release date:1998-07-01
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Binding mode of benzhydroxamic acid to Arthromyces ramosus peroxidase shown by X-ray crystallographic analysis of the complex at 1.6 A resolution.
FEBS Lett., 412, 1997
7XWA
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BU of 7xwa by Molmil
Crystal structure of the receptor binding domain of SARS-CoV-2 Omicron BA.4/5 variant spike protein in complex with its receptor ACE2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, ...
Authors:Suzuki, T, Kimura, K, Hashiguchi, T.
Deposit date:2022-05-26
Release date:2022-09-28
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.36 Å)
Cite:Virological characteristics of the SARS-CoV-2 Omicron BA.2 subvariants, including BA.4 and BA.5.
Cell, 185, 2022
5B5P
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BU of 5b5p by Molmil
Crystal structure of the catalytic domain of MMP-13 complexed with 4-oxo-N-(3-(2-(1H-1,2,4-triazol-3-ylsulfanyl)ethoxy)benzyl)-3,4-dihydroquinazoline-2-carboxamide
Descriptor: 4-oxo-N-{3-[2-(1H-1,2,4-triazol-3-ylsulfanyl)ethoxy]benzyl}-3,4-dihydroquinazoline-2-carboxamide, CALCIUM ION, Collagenase 3, ...
Authors:Oki, H, Tanaka, Y.
Deposit date:2016-05-13
Release date:2017-01-18
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Discovery of Novel, Highly Potent, and Selective Matrix Metalloproteinase (MMP)-13 Inhibitors with a 1,2,4-Triazol-3-yl Moiety as a Zinc Binding Group Using a Structure-Based Design Approach
J. Med. Chem., 60, 2017
1GVD
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BU of 1gvd by Molmil
CRYSTAL STRUCTURE OF C-MYB R2 V103L MUTANT
Descriptor: AMMONIUM ION, MYB PROTO-ONCOGENE PROTEIN, SULFATE ION
Authors:Tahirov, T.H, Ogata, K.
Deposit date:2002-02-08
Release date:2003-07-03
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Crystal Structure of C-Myb DNA-Binding Domain: Specific Na+ Binding and Correlation with NMR Structure
To be Published
1GV5
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BU of 1gv5 by Molmil
CRYSTAL STRUCTURE OF C-MYB R2
Descriptor: MYB PROTO-ONCOGENE PROTEIN, SODIUM ION
Authors:Tahirov, T.H, Ogata, K.
Deposit date:2002-02-06
Release date:2003-07-03
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Crystal Structure of C-Myb DNA-Binding Domain: Specific Na+ Binding and Correlation with NMR Structure
To be Published
5GXQ
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BU of 5gxq by Molmil
The crystal structure of the nucleosome containing H3.6
Descriptor: DNA (146-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ...
Authors:Taguchi, H, Xie, Y, Horikoshi, N, Kurumizaka, H.
Deposit date:2016-09-19
Release date:2017-04-19
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Crystal Structure and Characterization of Novel Human Histone H3 Variants, H3.6, H3.7, and H3.8
Biochemistry, 56, 2017
1GUU
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BU of 1guu by Molmil
CRYSTAL STRUCTURE OF C-MYB R1
Descriptor: MYB PROTO-ONCOGENE PROTEIN, SODIUM ION
Authors:Tahirov, T.H, Ogata, K.
Deposit date:2002-01-30
Release date:2003-06-26
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal Structure of C-Myb DNA-Binding Domain: Specific Na+ Binding and Correlation with NMR Structure
To be Published
1GV2
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BU of 1gv2 by Molmil
CRYSTAL STRUCTURE OF C-MYB R2R3
Descriptor: MYB PROTO-ONCOGENE PROTEIN, SODIUM ION
Authors:Tahirov, T.H, Ogata, K.
Deposit date:2002-02-05
Release date:2003-07-03
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Crystal Structure of C-Myb DNA-Binding Domain: Specific Na+ Binding and Correlation with NMR Structure
To be Published

221051

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