Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
6NHW
DownloadVisualize
BU of 6nhw by Molmil
Structure of the transmembrane domain of the Death Receptor 5 - Dimer of Trimer
Descriptor: Tumor necrosis factor receptor superfamily member 10B
Authors:Chou, J.J, Pan, L, Fu, Q, Zhao, L, Chen, W, Piai, A, Fu, T, Wu, H.
Deposit date:2018-12-24
Release date:2019-02-27
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Higher-Order Clustering of the Transmembrane Anchor of DR5 Drives Signaling.
Cell, 176, 2019
6DMD
DownloadVisualize
BU of 6dmd by Molmil
ppGpp Riboswitch bound to ppGpp, manganese chloride structure
Descriptor: GUANOSINE-5',3'-TETRAPHOSPHATE, MAGNESIUM ION, MANGANESE (II) ION, ...
Authors:Peselis, A, Serganov, A.
Deposit date:2018-06-05
Release date:2018-11-14
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:ykkC riboswitches employ an add-on helix to adjust specificity for polyanionic ligands.
Nat. Chem. Biol., 14, 2018
6NHY
DownloadVisualize
BU of 6nhy by Molmil
Structure of the transmembrane domain of the Death Receptor 5 mutant (G217Y) - Trimer Only
Descriptor: Tumor necrosis factor receptor superfamily member 10B
Authors:Chou, J.J, Pan, L, Zhao, L, Chen, W, Piai, A, Fu, T, Wu, H, Liu, Z.
Deposit date:2018-12-24
Release date:2019-02-27
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Higher-Order Clustering of the Transmembrane Anchor of DR5 Drives Signaling.
Cell, 176, 2019
6DNR
DownloadVisualize
BU of 6dnr by Molmil
PRPP Riboswitch bound to PRPP, ligand-free structure
Descriptor: MAGNESIUM ION, PRPP Riboswitch
Authors:Peselis, A, Serganov, A.
Deposit date:2018-06-07
Release date:2018-11-14
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.896 Å)
Cite:ykkC riboswitches employ an add-on helix to adjust specificity for polyanionic ligands.
Nat. Chem. Biol., 14, 2018
3UI4
DownloadVisualize
BU of 3ui4 by Molmil
0.8 A resolution crystal structure of human Parvulin 14
Descriptor: CHLORIDE ION, Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4, SULFATE ION
Authors:Mueller, J.W, Link, N.M, Matena, A, Hoppstock, L, Rueppel, A, Bayer, P, Blankenfeldt, W.
Deposit date:2011-11-04
Release date:2011-12-07
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (0.8 Å)
Cite:Crystallographic proof for an extended hydrogen-bonding network in small prolyl isomerases.
J.Am.Chem.Soc., 133, 2011
4OEP
DownloadVisualize
BU of 4oep by Molmil
Crystal structure of the ZO-1 PDZ1 domain in complex with the 7-mer Claudin1 C-terminal tail
Descriptor: ACETATE ION, DODECAETHYLENE GLYCOL, Tight junction protein ZO-1
Authors:Nomme, J, Lavie, A.
Deposit date:2014-01-13
Release date:2015-01-14
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structural Basis of a Key Factor Regulating the Affinity between the Zonula Occludens First PDZ Domain and Claudins.
J.Biol.Chem., 290, 2015
6NUG
DownloadVisualize
BU of 6nug by Molmil
hGRNA4-28_3s
Descriptor: Granulin-4
Authors:Dastpeyman, M, Bansal, P, Wilson, D, Loukas, A, Smout, M, Daly, N.
Deposit date:2019-02-01
Release date:2020-02-05
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:hGRN4-28_3s
to be published
6UAN
DownloadVisualize
BU of 6uan by Molmil
B-Raf:14-3-3 complex
Descriptor: 14-3-3 zeta, Serine/threonine-protein kinase B-raf
Authors:Kondo, Y, Ognjenovic, J, Banerjee, S, Karandur, D, Merk, A, Kulhanek, K, Wong, K, Roose, J.P, Subramaniam, S, Kuriyan, J.
Deposit date:2019-09-11
Release date:2019-09-25
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Cryo-EM structure of a dimeric B-Raf:14-3-3 complex reveals asymmetry in the active sites of B-Raf kinases.
Science, 366, 2019
1MOR
DownloadVisualize
BU of 1mor by Molmil
ISOMERASE DOMAIN OF GLUCOSAMINE 6-PHOSPHATE SYNTHASE COMPLEXED WITH GLUCOSE 6-PHOSPHATE
Descriptor: 6-O-phosphono-alpha-D-glucopyranose, GLUCOSAMINE 6-PHOSPHATE SYNTHASE
Authors:Teplyakov, A.
Deposit date:1997-04-12
Release date:1998-10-07
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The mechanism of sugar phosphate isomerization by glucosamine 6-phosphate synthase.
Protein Sci., 8, 1999
6HXA
DownloadVisualize
BU of 6hxa by Molmil
AntI from P. luminescens catalyses terminal polyketide shortening in the biosynthesis of anthraquinones
Descriptor: AntI, TETRAETHYLENE GLYCOL, TRIETHYLENE GLYCOL
Authors:Zhou, Q, Braeuer, A, Grammbitter, G, Schmalhofer, M, Saura, P, Adihou, H, Kaila, V.R.I, Groll, M, Bode, H.
Deposit date:2018-10-16
Release date:2019-08-07
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Molecular mechanism of polyketide shortening in anthraquinone biosynthesis ofPhotorhabdus luminescens.
Chem Sci, 10, 2019
2R8B
DownloadVisualize
BU of 2r8b by Molmil
The crystal structure of the protein Atu2452 of unknown function from Agrobacterium tumefaciens str. C58
Descriptor: SULFATE ION, Uncharacterized protein Atu2452
Authors:Tan, K, Xu, X, Zheng, H, Savchenko, A, Edwards, A.M, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2007-09-10
Release date:2007-09-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.56 Å)
Cite:The crystal structure of the protein Atu2452 of unknown function from Agrobacterium tumefaciens str. C58.
TO BE PUBLISHED
6O6O
DownloadVisualize
BU of 6o6o by Molmil
Structure of the regulator FasR from Mycobacterium tuberculosis
Descriptor: MYRISTIC ACID, TetR family transcriptional regulator
Authors:Larrieux, N, Trajtenberg, F, Lara, J, Gramajo, H, Buschiazzo, A.
Deposit date:2019-03-07
Release date:2020-03-11
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Mycobacterium tuberculosis FasR senses long fatty acyl-CoA through a tunnel and a hydrophobic transmission spine.
Nat Commun, 11, 2020
6O5V
DownloadVisualize
BU of 6o5v by Molmil
Binary complex of native hAChE with oxime reactivator RS-170B
Descriptor: 4-carbamoyl-1-(3-{2-[(E)-(hydroxyimino)methyl]-1H-imidazol-1-yl}propyl)pyridin-1-ium, Acetylcholinesterase, GLYCEROL, ...
Authors:Gerlits, O, Kovalevsky, A, Radic, Z.
Deposit date:2019-03-04
Release date:2019-05-29
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.152 Å)
Cite:Productive reorientation of a bound oxime reactivator revealed in room temperature X-ray structures of native and VX-inhibited human acetylcholinesterase.
J.Biol.Chem., 294, 2019
2R9N
DownloadVisualize
BU of 2r9n by Molmil
Cathepsin S complexed with Compound 26
Descriptor: Cathepsin S, N-[(1S)-2-{[(3S)-1-benzyl-3-cyanopyrrolidin-3-yl]amino}-1-(cyclohexylmethyl)-2-oxoethyl]morpholine-4-carboxamide
Authors:Ward, Y.D, Emmanuel, M.J, Thomson, D.S, Liu, W, Bekkali, Y, Frye, L.L, Girardot, M, Morwick, T, Young, E.R.R, Zindell, R, Hrapchak, M, DeTuri, M, White, A, Crane, K.M, White, D.M, Wang, Y, Hao, M.-H, Grygon, C.A, Labadia, M.E, Wildeson, J, Freeman, D, Nelson, R, Capolino, A, Peterson, J.D, Raymond, E.L, Brown, M.L, Spero, D.M.
Deposit date:2007-09-13
Release date:2007-12-18
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Design and Synthesis of Reversible Inhibitors of Cathepsin S: alpha,alpha-Disubstitution at the P1 Residue Provides Potent Inhibitors in Cellular Assays and In Vivo Models of Antigen Presentation
to be published
2R9O
DownloadVisualize
BU of 2r9o by Molmil
Cathepsin S complexed with Compound 8
Descriptor: Cathepsin S, N-[(1S)-2-{[(1R)-2-(benzyloxy)-1-cyano-1-methylethyl]amino}-1-(cyclohexylmethyl)-2-oxoethyl]morpholine-4-carboxamide
Authors:Ward, Y.D, Emmanuel, M.J, Thomson, D.S, Liu, W, Bekkali, Y, Frye, L.L, Girardot, M, Morwick, T, Young, E.R.R, Zindell, R, Hrapchak, M, DeTuri, M, White, A, Crane, K.M, White, D.M, Wang, Y, Hao, M.-H, Grygon, C.A, Labadia, M.E, Wildeson, J, Freeman, D, Nelson, R, Capolino, A, Peterson, J.D, Raymond, E.L, Brown, M.L, Spero, D.M.
Deposit date:2007-09-13
Release date:2007-12-18
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Design and Synthesis of Reversible Inhibitors of Cathepsin S: alpha,alpha-Disubstitution at the P1 Residue Provides Potent Inhibitors in Cellular Assays and In Vivo Models of Antigen Presentation
to be published
3UI5
DownloadVisualize
BU of 3ui5 by Molmil
Crystal structure of human Parvulin 14
Descriptor: (4S,5S)-1,2-DITHIANE-4,5-DIOL, Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4, SODIUM ION, ...
Authors:Mueller, J.W, Link, N.M, Matena, A, Hoppstock, L, Rueppel, A, Bayer, P, Blankenfeldt, W.
Deposit date:2011-11-04
Release date:2011-12-07
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystallographic proof for an extended hydrogen-bonding network in small prolyl isomerases.
J.Am.Chem.Soc., 133, 2011
1M4L
DownloadVisualize
BU of 1m4l by Molmil
STRUCTURE OF NATIVE CARBOXYPEPTIDASE A AT 1.25 RESOLUTION
Descriptor: CARBOXYPEPTIDASE A, ZINC ION
Authors:Kilshtain-Vardi, A, Glick, M, Greenblatt, H.M, Goldblum, A, Shoham, G.
Deposit date:2002-07-03
Release date:2003-01-10
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Refined structure of bovine carboxypeptidase A at 1.25 A resolution.
Acta Crystallogr.,Sect.D, 59, 2003
6O81
DownloadVisualize
BU of 6o81 by Molmil
Electron cryo-microscopy of the eukaryotic translation initiation factor 2B bound to translation initiation factor 2 from Homo sapiens
Descriptor: 2-(4-chloranylphenoxy)-~{N}-[4-[2-(4-chloranylphenoxy)ethanoylamino]cyclohexyl]ethanamide, Eukaryotic translation initiation factor 2 subunit 1, Eukaryotic translation initiation factor 2 subunit 3, ...
Authors:Nguyen, H, Kenner, L, Frost, A.
Deposit date:2019-03-08
Release date:2019-05-15
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.21 Å)
Cite:eIF2B-catalyzed nucleotide exchange and phosphoregulation by the integrated stress response.
Science, 364, 2019
2RD4
DownloadVisualize
BU of 2rd4 by Molmil
Design of specific inhibitors of Phospholipase A2: Crystal structure of the complex of phospholipase A2 with pentapeptide Leu-Val-Phe-Phe-Ala at 2.9 A resolution
Descriptor: CALCIUM ION, Phospholipase A2 isoform 1, Phospholipase A2 isoform 2, ...
Authors:Mirza, Z, Kaur, A, Singh, N, Sinha, M, Sharma, S, Srinivasan, A, Kaur, P, Singh, T.P.
Deposit date:2007-09-21
Release date:2007-10-09
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.97 Å)
Cite:Design of specific inhibitors of Phospholipase A2: Crystal structure of the complex of phospholipase A2 with pentapeptide Leu-Val-Phe-Phe-Ala at 2.9 A resolution
To be Published
4KIV
DownloadVisualize
BU of 4kiv by Molmil
RECOMBINANT KRINGLE IV-10/W72R MUTANT OF HUMAN APOLIPOPROTEIN(A)
Descriptor: APOLIPOPROTEIN
Authors:Mochalkin, I, Tulinsky, A, Scanu, A.
Deposit date:1998-08-26
Release date:1999-05-18
Last modified:2018-03-14
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Recombinant kringle IV-10 modules of human apolipoprotein(a): structure, ligand binding modes, and biological relevance.
Biochemistry, 38, 1999
6O6D
DownloadVisualize
BU of 6o6d by Molmil
N-terminal domain of translation initiation factor IF-3 from Helicobacter pylori
Descriptor: Translation initiation factor IF-3
Authors:Osipiuk, J, Tesar, C, Endres, M, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2019-03-06
Release date:2019-03-13
Last modified:2019-12-18
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:N-terminal domain of translation initiation factor IF-3 from Helicobacter pylori
to be published
5HZ6
DownloadVisualize
BU of 5hz6 by Molmil
FABP4 in complex with 6-Chloro-2-isopropyl-4-(3-isopropyl-phenyl)-quinoline-3-carboxylic acid
Descriptor: 6-Chloro-2-isopropyl-4-(3-isopropyl-phenyl)-quinoline-3-carboxylic acid, Fatty acid-binding protein, adipocyte
Authors:Ehler, A, Rudolph, M.G.
Deposit date:2016-02-02
Release date:2016-12-14
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.14 Å)
Cite:Design and synthesis of selective, dual fatty acid binding protein 4 and 5 inhibitors.
Bioorg. Med. Chem. Lett., 26, 2016
1MQP
DownloadVisualize
BU of 1mqp by Molmil
THE CRYSTAL STRUCTURE OF ALPHA-D-GLUCURONIDASE FROM BACILLUS STEAROTHERMOPHILUS T-6
Descriptor: GLYCEROL, alpha-D-glucuronidase
Authors:Golan, G, Shallom, D, Teplitsky, A, Zaide, G, Shulami, S, Baasov, T, Stojanoff, V, Thompson, A, Shoham, Y, Shoham, G.
Deposit date:2002-09-17
Release date:2003-09-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structures of Geobacillus stearothermophilus alpha-glucuronidase complexed with its substrate and products: mechanistic implications.
J.Biol.Chem., 279, 2004
6DY1
DownloadVisualize
BU of 6dy1 by Molmil
Rabbit N-acylethanolamine-hydrolyzing acid amidase (NAAA) with fatty acid (myristate), in presence of Triton X-100
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-{2-[4-(1,1,3,3-TETRAMETHYLBUTYL)PHENOXY]ETHOXY}ETHANOL, CHLORIDE ION, ...
Authors:Gorelik, A, Gebai, A, Illes, K, Piomelli, D, Nagar, B.
Deposit date:2018-07-01
Release date:2018-09-26
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.998 Å)
Cite:Molecular mechanism of activation of the immunoregulatory amidase NAAA.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
4OQ1
DownloadVisualize
BU of 4oq1 by Molmil
Structure of the Streptococcal ancillary pilin
Descriptor: Cell wall surface anchor family protein
Authors:Shaik, M.M, Di Guilmi, A.M, Dessen, A.
Deposit date:2014-02-07
Release date:2014-04-23
Last modified:2014-07-02
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural Basis of Pilus Anchoring by the Ancillary Pilin RrgC of Streptococcus pneumoniae.
J.Biol.Chem., 289, 2014

223790

PDB entries from 2024-08-14

PDB statisticsPDBj update infoContact PDBjnumon