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8JP2
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BU of 8jp2 by Molmil
Crystal structure of AKR1C1 in complex with DFV
Descriptor: 7-HYDROXY-2-(4-HYDROXY-PHENYL)-CHROMAN-4-ONE, Aldo-keto reductase family 1 member C1, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Zheng, X.H, Liu, H, Yao, Z.Q, Zhang, L.P.
Deposit date:2023-06-10
Release date:2024-04-24
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Inhibition of AKR1Cs by liquiritigenin and the structural basis.
Chem.Biol.Interact., 385, 2023
8JP1
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BU of 8jp1 by Molmil
Crystal structure of AKR1C3 in complex with DFV
Descriptor: 7-HYDROXY-2-(4-HYDROXY-PHENYL)-CHROMAN-4-ONE, Aldo-keto reductase family 1 member C3, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Zheng, X.H, Liu, H, Yao, Z.Q, Zhang, L.P.
Deposit date:2023-06-10
Release date:2024-04-24
Method:X-RAY DIFFRACTION (2 Å)
Cite:Inhibition of AKR1Cs by liquiritigenin and the structural basis.
Chem.Biol.Interact., 385, 2023
7WVP
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BU of 7wvp by Molmil
Cryo-EM structure of SARS-CoV-2 Omicron Spike protein with human ACE2 receptor, C2 state
Descriptor: Angiotensin-converting enzyme 2, Spike glycoprotein
Authors:Han, W.Y, Wang, Y.F.
Deposit date:2022-02-10
Release date:2022-04-06
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Molecular basis of receptor binding and antibody neutralization of Omicron.
Nature, 604, 2022
7WVQ
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BU of 7wvq by Molmil
Cryo-EM structure of SARS-CoV-2 Omicron Spike protein with human ACE2 receptor, C3 state
Descriptor: Angiotensin-converting enzyme 2, Spike glycoprotein
Authors:Han, W.Y, Wang, Y.F.
Deposit date:2022-02-10
Release date:2022-04-06
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (4.04 Å)
Cite:Molecular basis of receptor binding and antibody neutralization of Omicron.
Nature, 604, 2022
2L65
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BU of 2l65 by Molmil
HADDOCK calculated model of the complex of the resistance protein CalC and Calicheamicin-Gamma
Descriptor: 2,4-dideoxy-4-(ethylamino)-3-O-methyl-alpha-L-threo-pentopyranose-(1-2)-4-amino-4,6-dideoxy-beta-D-glucopyranose, 2,6-dideoxy-4-thio-beta-D-allopyranose, 3-O-methyl-alpha-L-rhamnopyranose, ...
Authors:Singh, S, Markley, J.L, Thorson, J.S, Center for Eukaryotic Structural Genomics (CESG)
Deposit date:2010-11-15
Release date:2011-03-02
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structural insight into the self-sacrifice mechanism of enediyne resistance.
Acs Chem.Biol., 1, 2006
3VH7
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BU of 3vh7 by Molmil
Structure of HIV-1 gp41 NHR/fusion inhibitor complex P21
Descriptor: CP32M, Envelope glycoprotein gp160, MAGNESIUM ION
Authors:Yao, X, Waltersperger, S, Wang, M.T, Cui, S.
Deposit date:2011-08-23
Release date:2012-06-13
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.019 Å)
Cite:Structural basis of potent and broad HIV-1 fusion inhibitor CP32M
J.Biol.Chem., 287, 2012
9IMO
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BU of 9imo by Molmil
Crystal structure of Tubulin-RB3-TTL-Y12
Descriptor: CALCIUM ION, GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Yan, W, Yang, J.H.
Deposit date:2024-07-04
Release date:2025-02-26
Last modified:2025-03-26
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Identification of a ligand-binding site on tubulin mediating the tubulin-RB3 interaction.
Proc.Natl.Acad.Sci.USA, 122, 2025
9IM5
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BU of 9im5 by Molmil
Tubulin-RB3(MUT)-TTL-Y12
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, CHLORIDE ION, ...
Authors:Yan, W, Yang, J.H.
Deposit date:2024-07-02
Release date:2025-02-26
Last modified:2025-03-26
Method:X-RAY DIFFRACTION (2.86 Å)
Cite:Identification of a ligand-binding site on tubulin mediating the tubulin-RB3 interaction.
Proc.Natl.Acad.Sci.USA, 122, 2025
7MEJ
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BU of 7mej by Molmil
CryoEM structure of SARS-CoV-2 RBD in complex with nanobodies Nb21 and Nb36
Descriptor: Nanobody Nb21, Nanobody Nb36, Spike protein S1
Authors:Huang, W, Taylor, D.J.
Deposit date:2021-04-06
Release date:2021-08-11
Last modified:2025-05-14
Method:ELECTRON MICROSCOPY (3.55 Å)
Cite:Potent neutralizing nanobodies resist convergent circulating variants of SARS-CoV-2 by targeting diverse and conserved epitopes
Nat Commun, 12, 2021
7MDW
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BU of 7mdw by Molmil
CryoEM structure of SARS-CoV-2 RBD in complex with nanobodies Nb21 and Nb105
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike protein S1, nanobody Nb105, ...
Authors:Huang, W, Taylor, D.J.
Deposit date:2021-04-06
Release date:2021-08-11
Last modified:2025-05-28
Method:ELECTRON MICROSCOPY (3.58 Å)
Cite:Potent neutralizing nanobodies resist convergent circulating variants of SARS-CoV-2 by targeting diverse and conserved epitopes
Nat Commun, 12, 2021
7ME7
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BU of 7me7 by Molmil
CryoEM structure of SARS-CoV-2 RBD in complex with nanobodies Nb17 and Nb105
Descriptor: Nanobody Nb105, Nanobody Nb17, Spike protein S1
Authors:Huang, W, Taylor, D.J.
Deposit date:2021-04-06
Release date:2021-08-11
Last modified:2025-06-04
Method:ELECTRON MICROSCOPY (3.73 Å)
Cite:Potent neutralizing nanobodies resist convergent circulating variants of SARS-CoV-2 by targeting diverse and conserved epitopes
Nat Commun, 12, 2021
7MTR
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BU of 7mtr by Molmil
CryoEM Structure of Full-Length mGlu2 Bound to Ago-PAM ADX55164 and Glutamate
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-methoxy-6-propyl-N-(2-{4-[(1H-tetrazol-5-yl)methoxy]phenyl}ethyl)thieno[2,3-d]pyrimidin-4-amine, GLUTAMIC ACID, ...
Authors:Seven, A.B, Barros-Alvarez, X, Skiniotis, G.
Deposit date:2021-05-13
Release date:2021-07-07
Last modified:2025-05-21
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:G-protein activation by a metabotropic glutamate receptor.
Nature, 595, 2021
7MTQ
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BU of 7mtq by Molmil
CryoEM Structure of Full-Length mGlu2 in Inactive-State Bound to Antagonist LY341495
Descriptor: 2-[(1S,2S)-2-carboxycyclopropyl]-3-(9H-xanthen-9-yl)-D-alanine, 2-acetamido-2-deoxy-beta-D-glucopyranose, Metabotropic glutamate receptor 2
Authors:Seven, A.B, Barros-Alvarez, X, Skiniotis, G.
Deposit date:2021-05-13
Release date:2021-07-07
Last modified:2025-05-28
Method:ELECTRON MICROSCOPY (3.65 Å)
Cite:G-protein activation by a metabotropic glutamate receptor.
Nature, 595, 2021
7MTS
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BU of 7mts by Molmil
CryoEM Structure of mGlu2 - Gi Complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-methoxy-6-propyl-N-(2-{4-[(1H-tetrazol-5-yl)methoxy]phenyl}ethyl)thieno[2,3-d]pyrimidin-4-amine, GLUTAMIC ACID, ...
Authors:Seven, A.B, Barros-Alvarez, X, Skiniotis, G.
Deposit date:2021-05-13
Release date:2021-07-07
Last modified:2024-10-30
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:G-protein activation by a metabotropic glutamate receptor.
Nature, 595, 2021
7N9T
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BU of 7n9t by Molmil
CryoEM structure of SARS-CoV-2 Spike in complex with Nb17
Descriptor: Nanobody Nb17, Spike glycoprotein
Authors:Huang, W, Taylor, D.
Deposit date:2021-06-18
Release date:2021-08-11
Last modified:2025-05-28
Method:ELECTRON MICROSCOPY (3.18 Å)
Cite:Potent neutralizing nanobodies resist convergent circulating variants of SARS-CoV-2 by targeting diverse and conserved epitopes
Nat Commun, 12, 2021
3VIE
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BU of 3vie by Molmil
HIV-gp41 fusion inhibitor Sifuvirtide
Descriptor: Envelope glycoprotein gp160, Sifuvirtide
Authors:Yao, X, Waltersperger, S, Wang, M.T, Cui, S.
Deposit date:2011-09-29
Release date:2012-01-18
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Broad antiviral activity and crystal structure of HIV-1 fusion inhibitor sifuvirtide
J.Biol.Chem., 287, 2012
9JSB
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BU of 9jsb by Molmil
guide-bound NbaSPARDA complexes
Descriptor: Ago, DREN-APAZ, MAGNESIUM ION, ...
Authors:Zhuang, L.
Deposit date:2024-09-30
Release date:2025-04-02
Method:ELECTRON MICROSCOPY (2.93 Å)
Cite:Target DNA-induced filament formation and nuclease activation of SPARDA complex.
Cell Res., 2025
9JSP
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BU of 9jsp by Molmil
inactive NbaSPARDA complexes
Descriptor: Ago, DNA (5'-D(P*GP*CP*TP*GP*TP*GP*CP*AP*GP*TP*AP*TP*T)-3'), DREN-APAZ, ...
Authors:Zhuang, L.
Deposit date:2024-09-30
Release date:2025-04-02
Method:ELECTRON MICROSCOPY (3.34 Å)
Cite:Target DNA-induced filament formation and nuclease activation of SPARDA complex.
Cell Res., 2025
9JT2
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BU of 9jt2 by Molmil
substrate-bound NbaSPARDA complexes
Descriptor: Ago, DNA (5'-D(*TP*AP*TP*CP*GP*TP*CP*AP*GP*CP*TP*GP*TP*GP*CP*AP*GP*TP*AP*TP*T)-3'), DNA (5'-D(P*GP*AP*TP*AP*CP*TP*AP*C)-3'), ...
Authors:Zhuang, L.
Deposit date:2024-10-01
Release date:2025-04-02
Method:ELECTRON MICROSCOPY (3.19 Å)
Cite:Target DNA-induced filament formation and nuclease activation of SPARDA complex.
Cell Res., 2025
5XP5
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BU of 5xp5 by Molmil
C-Src in complex with ATP-Chf
Descriptor: MAGNESIUM ION, Proto-oncogene tyrosine-protein kinase Src, [(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-[(S)-fluoranyl-[oxidanyl(phosphonooxy)phosphoryl]methyl]phosphinic acid
Authors:Duan, Y, Guo, M, Dai, S, Chen, L, Chen, Y.
Deposit date:2017-06-01
Release date:2018-02-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.101 Å)
Cite:Remarkably Stereospecific Utilization of ATP alpha , beta-Halomethylene Analogues by Protein Kinases.
J. Am. Chem. Soc., 139, 2017
9JSZ
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BU of 9jsz by Molmil
active NbaSPARDA complexes
Descriptor: Ago, DNA (5'-D(*TP*AP*TP*CP*GP*TP*CP*AP*GP*CP*TP*GP*TP*GP*CP*AP*GP*TP*AP*TP*T)-3'), DREN-APAZ, ...
Authors:Zhuang, L.
Deposit date:2024-10-01
Release date:2025-04-02
Method:ELECTRON MICROSCOPY (3.18 Å)
Cite:Target DNA-induced filament formation and nuclease activation of SPARDA complex.
Cell Res., 2025
3VGY
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BU of 3vgy by Molmil
Structure of HIV-1 gp41 NHR/fusion inhibitor complex P321
Descriptor: CP32M, Envelope glycoprotein gp160, SULFATE ION
Authors:Yao, X, Waltersperger, S, Wang, M.T, Cui, S.
Deposit date:2011-08-22
Release date:2012-06-13
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.034 Å)
Cite:Structural basis of potent and broad HIV-1 fusion inhibitor CP32M
J.Biol.Chem., 287, 2012
8WCE
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BU of 8wce by Molmil
Cryo-EM structure of a protein-RNA complex
Descriptor: MAGNESIUM ION, RNA (31-MER), RNA (66-MER), ...
Authors:Li, Z.
Deposit date:2023-09-11
Release date:2024-05-22
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3.09 Å)
Cite:Molecular mechanism for target RNA recognition and cleavage of Cas13h.
Nucleic Acids Res., 52, 2024
8WD8
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BU of 8wd8 by Molmil
Cryo-EM structure of TtdAgo-guide DNA-target DNA complex
Descriptor: Argonaute family protein, Guide DNA, MAGNESIUM ION, ...
Authors:Zhuang, L.
Deposit date:2023-09-14
Release date:2024-01-31
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Molecular mechanism for target recognition, dimerization, and activation of Pyrococcus furiosus Argonaute.
Mol.Cell, 84, 2024
7BPI
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BU of 7bpi by Molmil
The crystal structue of PDE10A complexed with 14
Descriptor: 8-[(E)-2-[5-methyl-1-[3-[3-(4-methylpiperazin-1-yl)propoxy]phenyl]benzimidazol-2-yl]ethenyl]quinoline, MAGNESIUM ION, ZINC ION, ...
Authors:Yang, Y, Zhang, S, Zhou, Q, Huang, Y.-Y, Guo, L, Luo, H.-B.
Deposit date:2020-03-22
Release date:2021-01-27
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.4000864 Å)
Cite:Discovery of highly selective and orally available benzimidazole-based phosphodiesterase 10 inhibitors with improved solubility and pharmacokinetic properties for treatment of pulmonary arterial hypertension.
Acta Pharm Sin B, 10, 2020

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