Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
9BBE
DownloadVisualize
BU of 9bbe by Molmil
Co-crystal structure of human DDB1 bound to fragment UB028668
Descriptor: 5-(4-methoxyphenyl)-3-[(3S)-pyrrolidin-3-yl]-1,2,4-oxadiazole, DNA damage-binding protein 1, L(+)-TARTARIC ACID, ...
Authors:Zeng, H, Dong, A, Frommlet, A, Seitova, A, Loppnau, P, Ackloo, S, Arrowsmith, C.H, Edwards, A.M, Halabelian, L, Structural Genomics Consortium (SGC)
Deposit date:2024-04-05
Release date:2024-06-12
Method:X-RAY DIFFRACTION (2 Å)
Cite:Co-crystal structure of human DDB1 bound to fragment UB028668
To be published
9BBG
DownloadVisualize
BU of 9bbg by Molmil
Co-crystal structure of human DDB1 bound to fragment UB028671
Descriptor: 1,2-ETHANEDIOL, 1H-indol-6-amine, DNA damage-binding protein 1, ...
Authors:Zeng, H, Dong, A, Frommlet, A, Seitova, A, Loppnau, P, Ackloo, S, Arrowsmith, C.H, Edwards, A.M, Halabelian, L, Structural Genomics Consortium (SGC)
Deposit date:2024-04-05
Release date:2024-06-12
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Co-crystal structure of human DDB1 bound to fragment UB028671
To be published
9BBI
DownloadVisualize
BU of 9bbi by Molmil
Co-crystal structure of human DDB1 bound to fragment UB028669
Descriptor: 3-([1,3]oxazolo[4,5-b]pyridin-2-yl)aniline, DNA damage-binding protein 1, L(+)-TARTARIC ACID, ...
Authors:Zeng, H, Dong, A, Frommlet, A, Seitova, A, Loppnau, P, Ackloo, S, Arrowsmith, C.H, Edwards, A.M, Halabelian, L, Structural Genomics Consortium (SGC)
Deposit date:2024-04-05
Release date:2024-06-12
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Co-crystal structure of human DDB1 bound to fragment UB028669
To be published
9IJ6
DownloadVisualize
BU of 9ij6 by Molmil
Crystal structure of the complex of erythrose-4-phosphate dehydrogenase from Acinetobacter baumannii with Adenosine phosphate at 2.40 A resolution.
Descriptor: ADENOSINE MONOPHOSPHATE, Glyceraldehyde-3-phosphate dehydrogenase, MAGNESIUM ION, ...
Authors:Viswanathan, V, Kumari, A, Singh, A, Kumar, A, Sharma, P, Chopra, S, Jeyakanthan, J, Sharma, S, Raje, C.I, Singh, T.P.
Deposit date:2024-06-21
Release date:2024-07-03
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of the complex of erythrose-4-phosphate dehydrogenase from Acinetobacter baumannii with Adenosine phosphate at 2.40 A resolution.
To Be Published
8ZN1
DownloadVisualize
BU of 8zn1 by Molmil
Structure of erythrose-4-phosphate dehydrogenase from Acinetobacter baumannii at 3.00 A resolution
Descriptor: Glyceraldehyde-3-phosphate dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, SULFATE ION
Authors:Viswanathan, V, Kumari, A, Singh, A, Kumar, A, Sharma, P, Chopra, S, Sharma, S, Raje, C.I, Singh, T.P.
Deposit date:2024-05-25
Release date:2024-06-05
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure of erythrose-4-phosphate dehydrogenase from Acinetobacter baumannii at 3.00 A resolution
To Be Published
9IIM
DownloadVisualize
BU of 9iim by Molmil
Structure of the complex of erythrose-4-phosphate dehydrogenase from Acinetobacter baumannii with nicotinamide adenine dinucleotide at 2.74 A resolution.
Descriptor: Glyceraldehyde-3-phosphate dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, SULFATE ION
Authors:Viswanathan, V, Kumari, A, Singh, A, Kumar, A, Sharma, P, Chopra, S, Jeyakanthan, J, Sharma, S, Raje, C.I, Singh, T.P.
Deposit date:2024-06-20
Release date:2024-07-03
Method:X-RAY DIFFRACTION (2.74 Å)
Cite:Structure of the complex of erythrose-4-phosphate dehydrogenase from Acinetobacter baumannii with nicotinamide adenine dinucleotide at 2.74 A resolution.
To Be Published
9IIL
DownloadVisualize
BU of 9iil by Molmil
Structure of the complex of erythrose-4-phosphate dehydrogenase from Acinetobacter baumannii with nicotinamide adenine dinucleotide in the presence of poly(ethylene glycol) at 2.20 A resolution
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DI(HYDROXYETHYL)ETHER, ...
Authors:Viswanathan, V, Kumari, A, Singh, A, Kumar, A, Sharma, P, Chopra, S, Jeyakanthan, J, Sharma, S, Raje, C.I, Singh, T.P.
Deposit date:2024-06-20
Release date:2024-07-03
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of the complex of erythrose-4-phosphate dehydrogenase from Acinetobacter baumannii with nicotinamide adenine dinucleotide in the presence of poly(ethylene glycol) at 2.20 A resolution
To Be Published
9GJ2
DownloadVisualize
BU of 9gj2 by Molmil
Crystal structure of human cathepsin S produced in insect cells in complex with ketoamide 13b
Descriptor: 1,2-ETHANEDIOL, CITRIC ACID, Cathepsin S, ...
Authors:Falke, S, Karnicar, K, Usenik, A, Lindic, N, Sekirnik, A, Reinke, P.Y.A, Guenther, S, Turk, D, Meents, A.
Deposit date:2024-08-20
Release date:2024-09-04
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Crystal structure of human cathepsin S produced in insect cells in complex with ketoamide 13b
To Be Published
9AUS
DownloadVisualize
BU of 9aus by Molmil
Crystal structure of loop-closed dumbbell RNA bridged by glycine
Descriptor: Fab BL3-6 heavy chain, Fab BL3-6 light chain, GLYCINE, ...
Authors:Radakovic, A, Lewicka, A, Todisco, M, Aitken, H.R.M, Weiss, Z, Kim, S, Bannan, A, Piccirilli, J.A, Szostak, J.W.
Deposit date:2024-02-29
Release date:2024-09-04
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:A potential role for RNA aminoacylation prior to its role in peptide synthesis.
Proc.Natl.Acad.Sci.USA, 121, 2024
9AUR
DownloadVisualize
BU of 9aur by Molmil
Crystal structure of loop-closed A21 2'-OMe dumbbell RNA bridged by glycine
Descriptor: Fab BL3-6 heavy chain, Fab BL3-6 light chain, GLYCINE, ...
Authors:Radakovic, A, Lewicka, A, Todisco, M, Aitken, H.R.M, Weiss, Z, Kim, S, Bannan, A, Piccirilli, J.A, Szostak, J.W.
Deposit date:2024-02-29
Release date:2024-09-04
Last modified:2024-09-11
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:A potential role for RNA aminoacylation prior to its role in peptide synthesis.
Proc.Natl.Acad.Sci.USA, 121, 2024
9RSA
DownloadVisualize
BU of 9rsa by Molmil
CRYSTAL STRUCTURE OF TWO COVALENT NUCLEOSIDE DERIVATIVES OF RIBONUCLEASE A
Descriptor: 3'-DEOXY-3'-ACETAMIDO-URIDINE, RIBONUCLEASE A
Authors:Nachman, J, Wlodawer, A.
Deposit date:1989-08-28
Release date:1991-04-15
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of two covalent nucleoside derivatives of ribonuclease A.
Biochemistry, 29, 1990
9EUU
DownloadVisualize
BU of 9euu by Molmil
Structure of recombinant alpha-synuclein fibrils 1B capable of seeding GCIs in vivo
Descriptor: Alpha-synuclein
Authors:Burger, D, Kashyrina, M, Lewis, A, De Nuccio, F, Mohammed, I, de La Seigliere, H, van den Heuvel, L, Feuillie, C, Verchere, J, Berbon, M, Arotcarena, M, Retailleau, A, Bezard, E, Laferriere, F, Loquet, A, Bousset, L, Baron, T, Lofrumento, D.D, De Giorgi, F, Stahlberg, H, Ichas, F.
Deposit date:2024-03-28
Release date:2024-06-05
Method:ELECTRON MICROSCOPY (1.93 Å)
Cite:Multiple System Atrophy: Insights from aSyn Fibril Structure
To Be Published
2VXO
DownloadVisualize
BU of 2vxo by Molmil
Human GMP synthetase in complex with XMP
Descriptor: GMP SYNTHASE [GLUTAMINE-HYDROLYZING], SULFATE ION, XANTHOSINE-5'-MONOPHOSPHATE
Authors:Welin, M, Lehtio, L, Andersson, J, Arrowsmith, C.H, Berglund, H, Collins, R, Dahlgren, L.G, Edwards, A.M, Flodin, S, Flores, A, Graslund, S, Hammarstrom, M, Johansson, A, Johansson, I, Karlberg, T, Kotenyova, T, Moche, M, Nilsson, M.E, Nyman, T, Olesen, K, Persson, C, Sagemark, J, Schueler, H, Thorsell, A.G, Tresaugues, L, Van Den Berg, S, Wisniewska, M, Wikstrom, M, Nordlund, P.
Deposit date:2008-07-08
Release date:2008-08-12
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Substrate Specificity and Oligomerization of Human Gmp Synthetase
J.Mol.Biol., 425, 2013
2VYN
DownloadVisualize
BU of 2vyn by Molmil
Structure of E.Coli GAPDH Rat Sperm GAPDH heterotetramer
Descriptor: FORMIC ACID, GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Frayne, J, Taylor, A, Hall, L, Hadfield, A.
Deposit date:2008-07-25
Release date:2008-08-05
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of Insoluble Rat Sperm Glyceraldehyde-3-Phosphate Dehydrogenase (Gapdh) Via Heterotetramer Formation with Escherichia Coli Gapdh Reveals Target for Contraceptive Design.
J.Biol.Chem., 284, 2009
4V54
DownloadVisualize
BU of 4v54 by Molmil
Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Borovinskaya, M.A, Pai, R.D, Zhang, W, Schuwirth, B.-S, Holton, J.M, Hirokawa, G, Kaji, H, Kaji, A, Cate, J.H.D.
Deposit date:2007-06-16
Release date:2014-07-09
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structural basis for aminoglycoside inhibition of bacterial ribosome recycling.
Nat.Struct.Mol.Biol., 14, 2007
8HQ9
DownloadVisualize
BU of 8hq9 by Molmil
Crystal structure of the MlaD domain of the MlaD protein from Escherichia coli (Form II)
Descriptor: CARBON DIOXIDE, Intermembrane phospholipid transport system binding protein MlaD, MAGNESIUM ION
Authors:Dutta, A, Kanaujia, S.P.
Deposit date:2022-12-13
Release date:2024-01-10
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:The Structural Features of MlaD Illuminate its Unique Ligand-Transporting Mechanism and Ancestry.
Protein J., 43, 2024
4V5O
DownloadVisualize
BU of 4v5o by Molmil
CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.
Descriptor: 18S RRNA, 40S RIBOSOMAL PROTEIN S12, 40S RIBOSOMAL PROTEIN S3A, ...
Authors:Rabl, J, Leibundgut, M, Ataide, S.F, Haag, A, Ban, N.
Deposit date:2010-11-26
Release date:2014-07-09
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3.93 Å)
Cite:Crystal Structure of the Eukaryotic 40S Ribosomal Subunit in Complex with Initiation Factor 1.
Science, 331, 2011
4UT5
DownloadVisualize
BU of 4ut5 by Molmil
Crystal structure of the LecB lectin from Pseudomonas aeruginosa strain PA7 in complex with lewis a tetrasaccharide
Descriptor: CALCIUM ION, LECB LECTIN, beta-D-galactopyranose, ...
Authors:Boukerb, A.M, Decor, A, Tabaroni, R, Varrot, A, Debentzmann, S, Vidal, S, Imberty, A, Cournoyer, B.
Deposit date:2014-07-18
Release date:2015-07-22
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Genomic Rearrangements and Functional Diversification of Leca and Lecb Lectin-Coding Regions Impacting the Efficacy of Glycomimetics Directed Against Pseudomonas Aeruginosa.
Front.Microbiol., 7, 2016
8HQA
DownloadVisualize
BU of 8hqa by Molmil
Crystal structure of the ectodomain of the MlaD protein from Escherichia coli in the resting state
Descriptor: Intermembrane phospholipid transport system binding protein MlaD
Authors:Dutta, A, Kanaujia, S.P.
Deposit date:2022-12-13
Release date:2024-01-10
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:The Structural Features of MlaD Illuminate its Unique Ligand-Transporting Mechanism and Ancestry.
Protein J., 43, 2024
4V63
DownloadVisualize
BU of 4v63 by Molmil
Structural basis for translation termination on the 70S ribosome.
Descriptor: 16S RRNA, 23S RRNA, 30S ribosomal protein S10, ...
Authors:Laurberg, M, Asahara, H, Korostelev, A, Zhu, J, Trakhanov, S, Noller, H.F.
Deposit date:2008-05-16
Release date:2014-07-09
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.207 Å)
Cite:Structural basis for translation termination on the 70S ribosome
Nature, 454, 2008
3EMT
DownloadVisualize
BU of 3emt by Molmil
Crystal structure of the mimivirus NDK +Kpn-R107G double mutant complexed with dGDP
Descriptor: 2'-DEOXYGUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Nucleoside diphosphate kinase
Authors:Jeudy, S, Lartigue, A, Claverie, J.M, Abergel, C.
Deposit date:2008-09-25
Release date:2009-08-11
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Dissecting the unique nucleotide specificity of mimivirus nucleoside diphosphate kinase.
J.Virol., 83, 2009
9C6V
DownloadVisualize
BU of 9c6v by Molmil
Crystal Structure of a single chain trimer composed of HLA-B*39:06 Y84C variant, beta-2microglobulin, and NRVMLPKAA peptide from NLRP2 (1 molecule/asymmetric unit)
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, GLYCEROL, ...
Authors:Sharma, R, Amdare, N.P, Celikgil, A, Garforth, S.J, DiLorenzo, T.P, Almo, S.C, Ghosh, A.
Deposit date:2024-06-09
Release date:2024-09-04
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural and biochemical analysis of highly similar HLA-B allotypes differentially associated with type 1 diabetes.
J.Biol.Chem., 2024
5VY1
DownloadVisualize
BU of 5vy1 by Molmil
Crystal structure of the extended Tudor domain from BmPAPI
Descriptor: Tudor and KH domain-containing protein homolog
Authors:Hubbard, P.A, Pan, X, McNally, R, Ohtaki, A, Honda, S, Kirino, Y, Murali, R.
Deposit date:2017-05-24
Release date:2017-06-14
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.05 Å)
Cite:Structural studies of the Tudor domain from the Bombyx homolog of Drosophila PAPI: Implication to piRNA biogenesis
To Be Published
5VQH
DownloadVisualize
BU of 5vqh by Molmil
Crystal structure of the extended Tudor domain from BmPAPI in complex with sDMA
Descriptor: N3, N4-DIMETHYLARGININE, Tudor and KH domain-containing protein homolog
Authors:Hubbard, P.A, Pan, X, Ohtaki, A, McNally, R, Honda, S, Kirino, Y, Murali, R.
Deposit date:2017-05-08
Release date:2017-06-14
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural studies of the Tudor domain from the Bombyx homolog of Drosophila PAPI: Implication to piRNA biogenesis
To Be Published
5LER
DownloadVisualize
BU of 5ler by Molmil
Structure of the bacterial sex F pilus (13.2 Angstrom rise)
Descriptor: Pilin, [(2~{S})-3-[[(2~{R})-2,3-bis(oxidanyl)propoxy]-oxidanyl-phosphoryl]oxy-2-hexadec-9-enoyloxy-propyl] hexadecanoate
Authors:Costa, T.R.D, Ilangovan, I, Ukleja, M, Redzej, A, Santini, J.M, Smith, T.K, Egelman, E.H, Waksman, G.
Deposit date:2016-06-30
Release date:2016-11-02
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (5 Å)
Cite:Structure of the Bacterial Sex F Pilus Reveals an Assembly of a Stoichiometric Protein-Phospholipid Complex.
Cell, 166, 2016

224931

PDB entries from 2024-09-11

PDB statisticsPDBj update infoContact PDBjnumon