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7YTA
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BU of 7yta by Molmil
crystal structure of NtAGDP3 AGD1-2 in complex with an H3K9me2 peptide
Descriptor: AGDP3 AGD1-2, H3(1-15)K9me2 peptide
Authors:Zhou, X, Du, J.
Deposit date:2022-08-13
Release date:2022-10-12
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:The H3K9me2-binding protein AGDP3 limits DNA methylation and transcriptional gene silencing in Arabidopsis.
J Integr Plant Biol, 64, 2022
4TVP
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BU of 4tvp by Molmil
Crystal Structure of the HIV-1 BG505 SOSIP.664 Env Trimer Ectodomain, Comprising Atomic-Level Definition of Pre-Fusion gp120 and gp41, in Complex with Human Antibodies PGT122 and 35O22
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 35O22 Heavy chain, ...
Authors:Pancera, M, Zhou, T, Kwong, P.D.
Deposit date:2014-06-27
Release date:2014-10-08
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structure and immune recognition of trimeric pre-fusion HIV-1 Env.
Nature, 514, 2014
4Z3P
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BU of 4z3p by Molmil
MATE transporter ClbM in complex with Rb+
Descriptor: CACODYLATE ION, Putative drug/sodium antiporter, RUBIDIUM ION
Authors:Mousa, J.J, Bruner, S.D.
Deposit date:2015-03-31
Release date:2016-01-13
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:MATE transport of the E. coli-derived genotoxin colibactin.
Nat Microbiol, 1, 2016
4ZCQ
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BU of 4zcq by Molmil
Crystal structure of the C-terminal catalytic domain of Plasmodium falciparum CTP:phosphocholine cytidylyltransferase in complex with choline
Descriptor: CHOLINE ION, Cholinephosphate cytidylyltransferase
Authors:Guca, E, Hoh, F, Guichou, J.-F, Cerdan, R.
Deposit date:2015-04-16
Release date:2016-09-14
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Structural determinants of the catalytic mechanism of Plasmodium CCT, a key enzyme of malaria lipid biosynthesis.
Sci Rep, 8, 2018
6L8V
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BU of 6l8v by Molmil
membrane-bound Bax helix2-helix5 domain
Descriptor: Apoptosis regulator BAX
Authors:OuYang, B, Lv, F.
Deposit date:2019-11-07
Release date:2020-11-11
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:An amphipathic Bax core dimer forms part of the apoptotic pore wall in the mitochondrial membrane.
Embo J., 40, 2021
2MK5
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BU of 2mk5 by Molmil
Solution structure of a protein domain
Descriptor: Endolysin
Authors:Feng, Y, Gu, J.
Deposit date:2014-01-24
Release date:2014-05-28
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structural and biochemical characterization reveals LysGH15 as an unprecedented "EF-hand-like" calcium-binding phage lysin.
Plos Pathog., 10, 2014
6L40
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BU of 6l40 by Molmil
Discovery of novel peptidomimetic boronate ClpP inhibitors with noncanonical enzyme mechanism as potent virulence blockers in vitro and in vivo
Descriptor: ATP-dependent Clp protease proteolytic subunit, [(1S)-3-methyl-1-[[(2S)-3-phenyl-2-(pyrazin-2-ylcarbonylamino)propanoyl]amino]butyl]boronic acid
Authors:Luo, Y.F, Bao, R, Ju, Y, He, L.H.
Deposit date:2019-10-15
Release date:2020-07-08
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.209 Å)
Cite:Discovery of Novel Peptidomimetic Boronate ClpP Inhibitors with Noncanonical Enzyme Mechanism as Potent Virulence Blockersin Vitroandin Vivo.
J.Med.Chem., 63, 2020
2KW2
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BU of 2kw2 by Molmil
Solution NMR of the specialized acyl carrier protein (RPA2022) from Rhodopseudomonas palustris, Northeast Structural Genomics Consortium Target RpR324
Descriptor: Specialized acyl carrier protein
Authors:Rossi, P, Lee, H, Wohlbold, T.J, Valafar, H, Lemak, A, Ertekin, A, Forouhar, F, Ciccosanti, C, Rost, B, Acton, T, Xiao, R, Everett, J, Montelione, G.T, Northeast Structural Genomics Consortium (NESG)
Deposit date:2010-03-30
Release date:2010-04-21
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structure of a specialized acyl carrier protein essential for lipid A biosynthesis with very long-chain fatty acids in open and closed conformations.
Biochemistry, 51, 2012
8YDC
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BU of 8ydc by Molmil
Crystal structure of a hammerhead ribozyme with pseudoknot
Descriptor: DNA/RNA (5'-R(*AP*CP*AP*UP*GP*UP*CP*U)-D(P*C)-R(P*UP*GP*GP*GP*A)-3'), GUANOSINE-5'-TRIPHOSPHATE, ribozyme strand
Authors:Liu, Y, Zhan, X.
Deposit date:2024-02-20
Release date:2024-08-21
Method:X-RAY DIFFRACTION (2.89 Å)
Cite:The structure and catalytic mechanism of a pseudoknot-containing hammerhead ribozyme.
Nat Commun, 15, 2024
6TY0
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BU of 6ty0 by Molmil
NT PART CRYSTAL STRUCTURE OF THE RYMV-ENCODED VIRAL RNA SILENCING SUPPRESSOR P1
Descriptor: ZINC ION, p1
Authors:Vignols, F, Hoh, F.
Deposit date:2020-01-15
Release date:2021-01-27
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:A Flexible and Original Architecture of Two Unrelated Zinc Fingers Underlies the Role of the Multitask P1 in RYMV Spread.
J.Mol.Biol., 434, 2022
6TY2
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BU of 6ty2 by Molmil
CT PART CRYSTAL STRUCTURE OF THE RYMV-ENCODED VIRAL RNA SILENCING SUPPRESSOR P1
Descriptor: ZINC ION, p1
Authors:Vignols, F, Hoh, F.
Deposit date:2020-01-15
Release date:2021-01-27
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:A Flexible and Original Architecture of Two Unrelated Zinc Fingers Underlies the Role of the Multitask P1 in RYMV Spread.
J.Mol.Biol., 434, 2022
5H0K
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BU of 5h0k by Molmil
The crystal structure of WT Pedobacter heparinus SMUG2
Descriptor: Uncharacterized protein
Authors:Xie, W, Cao, W, Pang, P.
Deposit date:2016-10-04
Release date:2017-01-18
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:SMUG2 DNA glycosylase from Pedobacter heparinus as a new subfamily of the UDG superfamily
Biochem. J., 474, 2017
5H0J
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BU of 5h0j by Molmil
The crystal structure of WT Pedobacter heparinus SMUG2
Descriptor: Uncharacterized protein
Authors:Xie, W, Cao, W, Pang, P.
Deposit date:2016-10-04
Release date:2017-01-18
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.801 Å)
Cite:SMUG2 DNA glycosylase from Pedobacter heparinus as a new subfamily of the UDG superfamily
Biochem. J., 474, 2017
4QQG
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BU of 4qqg by Molmil
Crystal structure of an N-terminal HTATIP fragment
Descriptor: Histone acetyltransferase KAT5, UNKNOWN ATOM OR ION
Authors:Liu, Y, Tempel, W, Wernimont, A.K, Dobrovetsky, E, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Min, J, Structural Genomics Consortium (SGC)
Deposit date:2014-06-27
Release date:2014-07-09
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural and histone binding studies of the chromo barrel domain of TIP60.
FEBS Lett., 592, 2018
6RMK
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BU of 6rmk by Molmil
Bacteriorhodopsin, dark state, cell 2, refined using the same protocol as sub-ps time delays
Descriptor: Bacteriorhodopsin, RETINAL
Authors:Nass Kovacs, G, Colletier, J.-P, Gruenbein, M.L, Stensitzki, T, Batyuk, A, Carbajo, S, Doak, R.B, Ehrenberg, D, Foucar, L, Gasper, R, Gorel, A, Hilpert, M, Kloos, M, Koglin, J, Reinstein, J, Roome, C.M, Schlesinger, R, Seaberg, M, Shoeman, R.L, Stricker, M, Boutet, S, Haacke, S, Heberle, J, Domratcheva, T, Barends, T.R.M, Schlichting, I.
Deposit date:2019-05-07
Release date:2019-06-05
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Three-dimensional view of ultrafast dynamics in photoexcited bacteriorhodopsin.
Nat Commun, 10, 2019
4YDI
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BU of 4ydi by Molmil
Crystal structure of broad and potently neutralizing VRC01-class antibody Z258-VRC27.01, isolated from human donor Z258, in complex with HIV-1 gp120 from clade A strain Q23.17
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein gp160, ...
Authors:Zhou, T, Srivatsan, S, Kwong, P.D.
Deposit date:2015-02-22
Release date:2015-06-03
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.452 Å)
Cite:Structural Repertoire of HIV-1-Neutralizing Antibodies Targeting the CD4 Supersite in 14 Donors.
Cell, 161, 2015
4YDK
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BU of 4ydk by Molmil
Crystal structure of broadly and potently neutralizing antibody C38-VRC16.01 in complex with HIV-1 clade AE strain 93TH057 gp120
Descriptor: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, 2-acetamido-2-deoxy-beta-D-glucopyranose, DI(HYDROXYETHYL)ETHER, ...
Authors:Zhou, T, Moquin, S, Zheng, A, Kwong, P.D.
Deposit date:2015-02-22
Release date:2015-06-03
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.051 Å)
Cite:Structural Repertoire of HIV-1-Neutralizing Antibodies Targeting the CD4 Supersite in 14 Donors.
Cell, 161, 2015
4YDJ
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BU of 4ydj by Molmil
Crystal structure of broadly and potently neutralizing antibody 44-VRC13.01 in complex with HIV-1 clade AE strain 93TH057 gp120
Descriptor: (R,R)-2,3-BUTANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, ...
Authors:Zhou, T, Moquin, S, Kwong, P.D.
Deposit date:2015-02-22
Release date:2015-06-03
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.308 Å)
Cite:Structural Repertoire of HIV-1-Neutralizing Antibodies Targeting the CD4 Supersite in 14 Donors.
Cell, 161, 2015
4YDL
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BU of 4ydl by Molmil
Crystal structure of broadly and potently neutralizing antibody C38-VRC18.02 in complex with HIV-1 clade AE strain 93TH057gp120
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Envelope glycoprotein gp160,Envelope glycoprotein gp160, ...
Authors:Zhou, T, Srivatsan, S, Kwong, P.D.
Deposit date:2015-02-22
Release date:2015-06-03
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural Repertoire of HIV-1-Neutralizing Antibodies Targeting the CD4 Supersite in 14 Donors.
Cell, 161, 2015
4YFL
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BU of 4yfl by Molmil
Crystal structure of VH1-46 germline-derived CD4-binding site-directed antibody 1B2530 in complex with HIV-1 clade A/E 93TH057 gp120
Descriptor: 1B2530 Light chain, 1B2530 heavy chain, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Acharya, P, Zhou, T, Moquin, S, Kwong, P.D.
Deposit date:2015-02-25
Release date:2015-06-03
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (3.387 Å)
Cite:Structural Repertoire of HIV-1-Neutralizing Antibodies Targeting the CD4 Supersite in 14 Donors.
Cell, 161, 2015
2MP0
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BU of 2mp0 by Molmil
Protein Phosphorylation upon a Fleeting Encounter
Descriptor: Glucose-specific phosphotransferase enzyme IIA component, PHOSPHITE ION, Phosphoenolpyruvate-protein phosphotransferase
Authors:Xing, Q, Yang, J, Huang, P, Zhang, W, Tang, C.
Deposit date:2014-05-08
Release date:2014-08-20
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Visualizing an ultra-weak protein-protein interaction in phosphorylation signaling.
Angew.Chem.Int.Ed.Engl., 53, 2014
8KGT
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BU of 8kgt by Molmil
Structure of African swine fever virus topoisomerase II in complex with dsDNA
Descriptor: ADENOSINE-5'-DIPHOSPHATE, DNA topoisomerase 2
Authors:Cong, J, Xin, Y, Li, X, Chen, Y.
Deposit date:2023-08-19
Release date:2024-04-03
Last modified:2024-08-14
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural insights into the DNA topoisomerase II of the African swine fever virus.
Nat Commun, 15, 2024
8KGP
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BU of 8kgp by Molmil
Structure of African swine fever virus topoisomerase II in complex with dsDNA
Descriptor: DNA topoisomerase 2
Authors:Cong, J, Xin, Y, Li, X, Chen, Y.
Deposit date:2023-08-19
Release date:2024-04-03
Last modified:2024-08-14
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structural insights into the DNA topoisomerase II of the African swine fever virus.
Nat Commun, 15, 2024
8KGS
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BU of 8kgs by Molmil
Structure of African swine fever virus topoisomerase II in complex with dsDNA
Descriptor: DNA topoisomerase 2, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:Cong, J, Xin, Y, Li, X, Chen, Y.
Deposit date:2023-08-19
Release date:2024-04-03
Last modified:2024-08-14
Method:X-RAY DIFFRACTION (2.603 Å)
Cite:Structural insights into the DNA topoisomerase II of the African swine fever virus.
Nat Commun, 15, 2024
8KGQ
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BU of 8kgq by Molmil
Structure of African swine fever virus topoisomerase II in complex with dsDNA
Descriptor: DNA (38-MER), DNA topoisomerase 2
Authors:Cong, J, Xin, Y, Li, X, Chen, Y.
Deposit date:2023-08-19
Release date:2024-04-03
Last modified:2024-08-14
Method:ELECTRON MICROSCOPY (5.6 Å)
Cite:Structural insights into the DNA topoisomerase II of the African swine fever virus.
Nat Commun, 15, 2024

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PDB entries from 2024-08-21

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