Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
6JZ7
DownloadVisualize
BU of 6jz7 by Molmil
b-glucuronidase from Ruminococcus gnavus in complex with N1-substituted uronic isofagomine
Descriptor: (3~{S},4~{R},5~{R})-4,5-bis(oxidanyl)-1-propyl-piperidine-3-carboxylic acid, Beta-glucuronidase
Authors:Dashnyam, P, Lin, H.Y.
Deposit date:2019-04-30
Release date:2020-06-10
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Substituent Position of Iminocyclitols Determines the Potency and Selectivity for Gut Microbial Xenobiotic-Reactivating Enzymes.
J.Med.Chem., 63, 2020
6JZ6
DownloadVisualize
BU of 6jz6 by Molmil
b-glucuronidase from Ruminococcus gnavus in complex with C6-substituted uronic isofagomine
Descriptor: (2~{S},3~{S},4~{R},5~{R})-4,5-bis(oxidanyl)-2-propyl-piperidine-3-carboxylic acid, Beta-glucuronidase
Authors:Dashnyam, P, Lin, H.Y.
Deposit date:2019-04-30
Release date:2020-06-10
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.605 Å)
Cite:Substituent Position of Iminocyclitols Determines the Potency and Selectivity for Gut Microbial Xenobiotic-Reactivating Enzymes.
J.Med.Chem., 63, 2020
6JZ8
DownloadVisualize
BU of 6jz8 by Molmil
b-glucuronidase from Ruminococcus gnavus in complex with D-glucaro 1,5-lactone
Descriptor: (2S,3S,4S,5R)-3,4,5-trihydroxy-6-oxo-oxane-2-carboxylic acid, Beta-glucuronidase
Authors:Dashnyam, P, Lin, H.Y.
Deposit date:2019-04-30
Release date:2020-06-10
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.583 Å)
Cite:Substituent Position of Iminocyclitols Determines the Potency and Selectivity for Gut Microbial Xenobiotic-Reactivating Enzymes.
J.Med.Chem., 63, 2020
6JZ5
DownloadVisualize
BU of 6jz5 by Molmil
b-glucuronidase from Ruminococcus gnavus in complex with D-glucuronic acid
Descriptor: Beta-glucuronidase, beta-D-glucopyranuronic acid
Authors:Dashnyam, P, Lin, H.Y.
Deposit date:2019-04-30
Release date:2020-06-10
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Substituent Position of Iminocyclitols Determines the Potency and Selectivity for Gut Microbial Xenobiotic-Reactivating Enzymes.
J.Med.Chem., 63, 2020
6JZ3
DownloadVisualize
BU of 6jz3 by Molmil
b-glucuronidase from Ruminococcus gnavus in complex with uronic deoxynojirimycin
Descriptor: (2~{S},3~{R},4~{R},5~{S})-3,4,5-tris(oxidanyl)piperidine-2-carboxylic acid, (4R)-2-METHYLPENTANE-2,4-DIOL, Beta-glucuronidase
Authors:Dashnyam, P, Lin, H.Y.
Deposit date:2019-04-30
Release date:2020-05-13
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.502 Å)
Cite:Substituent Position of Iminocyclitols Determines the Potency and Selectivity for Gut Microbial Xenobiotic-Reactivating Enzymes.
J.Med.Chem., 63, 2020
7D5F
DownloadVisualize
BU of 7d5f by Molmil
Left-handed G-quadruplex containing 3 bulges
Descriptor: 3xBulge-LHG4motif
Authors:Winnerdy, F.R, Das, P, Ngo, K.H, Maity, A, Bakalar, B, Mechulam, Y, Schmitt, E, Phan, A.T.
Deposit date:2020-09-25
Release date:2021-02-10
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Bulges in left-handed G-quadruplexes.
Nucleic Acids Res., 49, 2021
4IGH
DownloadVisualize
BU of 4igh by Molmil
High resolution crystal structure of human dihydroorotate dehydrogenase bound with 4-quinoline carboxylic acid analog
Descriptor: 3-[decyl(dimethyl)ammonio]propane-1-sulfonate, 6-fluoro-2-[2-methyl-4-phenoxy-5-(propan-2-yl)phenyl]quinoline-4-carboxylic acid, Dihydroorotate dehydrogenase (quinone), ...
Authors:Deng, X, Das, P, Fontoura, B.M.A, Phillips, M.A, De Brabander, J.K.
Deposit date:2012-12-17
Release date:2013-08-21
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:SAR Based Optimization of a 4-Quinoline Carboxylic Acid Analog with Potent Anti-Viral Activity.
ACS MED.CHEM.LETT., 4, 2013
8Z2F
DownloadVisualize
BU of 8z2f by Molmil
Cryo-EM structure of apo Aspergillus terreus glutamate dehydrogenase (AtGDH) in the partially closed conformation (form 1)
Descriptor: Glutamate dehydrogenase
Authors:Godsora, B.K.J, Das, P, Bhaumik, P.
Deposit date:2024-04-12
Release date:2025-03-05
Method:ELECTRON MICROSCOPY (3.65 Å)
Cite:Conformational flexibility associated with remote residues regulates the kinetic properties of glutamate dehydrogenase.
Protein Sci., 34, 2025
8Z1M
DownloadVisualize
BU of 8z1m by Molmil
Cryo-EM structure of apo Aspergillus terreus glutamate dehydrogenase (AtGDH) in the partially closed conformation (form 2)
Descriptor: Glutamate dehydrogenase
Authors:Godsora, B.K.J, Das, P, Bhaumik, P.
Deposit date:2024-04-11
Release date:2025-03-05
Method:ELECTRON MICROSCOPY (3.25 Å)
Cite:Conformational flexibility associated with remote residues regulates the kinetic properties of glutamate dehydrogenase.
Protein Sci., 34, 2025
8Z1N
DownloadVisualize
BU of 8z1n by Molmil
Cryo-EM structure of apo Aspergillus terreus glutamate dehydrogenase (AtGDH) in the closed conformation (form 2)
Descriptor: Glutamate dehydrogenase
Authors:Godsora, B.K.J, Das, P, Bhaumik, P.
Deposit date:2024-04-11
Release date:2025-03-05
Method:ELECTRON MICROSCOPY (3.18 Å)
Cite:Conformational flexibility associated with remote residues regulates the kinetic properties of glutamate dehydrogenase.
Protein Sci., 34, 2025
8Z1C
DownloadVisualize
BU of 8z1c by Molmil
Cryo-EM structure of apo Aspergillus terreus glutamate dehydrogenase (AtGDH) in the closed conformation (form 1)
Descriptor: Glutamate dehydrogenase
Authors:Godsora, B.K.J, Das, P, Bhaumik, P.
Deposit date:2024-04-11
Release date:2025-03-05
Method:ELECTRON MICROSCOPY (3.15 Å)
Cite:Conformational flexibility associated with remote residues regulates the kinetic properties of glutamate dehydrogenase.
Protein Sci., 34, 2025
8Z1O
DownloadVisualize
BU of 8z1o by Molmil
Cryo-EM structure of apo Aspergillus niger glutamate dehydrogenase (AnGDH) in the closed conformation
Descriptor: Glutamate dehydrogenase
Authors:Godsora, B.K.J, Das, P, Bhaumik, P.
Deposit date:2024-04-11
Release date:2025-03-05
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Conformational flexibility associated with remote residues regulates the kinetic properties of glutamate dehydrogenase.
Protein Sci., 34, 2025
6SC4
DownloadVisualize
BU of 6sc4 by Molmil
Gamma-Carbonic Anhydrase from the Haloarchaeon Halobacterium sp.
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, CADMIUM ION, ...
Authors:Vogler, M, Karan, R, Renn, D, Vancea, A, Vielberg, V.-T, Groetzinger, S.W, DasSarma, P, Das Sarma, S, Eppinger, J, Groll, M, Rueping, M.
Deposit date:2019-07-23
Release date:2020-04-22
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structure and Active Site Engineering of a Halophilic gamma-Carbonic Anhydrase.
Front Microbiol, 11, 2020
1A0N
DownloadVisualize
BU of 1a0n by Molmil
NMR STUDY OF THE SH3 DOMAIN FROM FYN PROTO-ONCOGENE TYROSINE KINASE COMPLEXED WITH THE SYNTHETIC PEPTIDE P2L CORRESPONDING TO RESIDUES 91-104 OF THE P85 SUBUNIT OF PI3-KINASE, FAMILY OF 25 STRUCTURES
Descriptor: FYN, PRO-PRO-ARG-PRO-LEU-PRO-VAL-ALA-PRO-GLY-SER-SER-LYS-THR
Authors:Renzoni, D.A, Pugh, D.J.R, Siligardi, G, Das, P, Morton, C.J, Rossi, C, Waterfield, M.D, Campbell, I.D, Ladbury, J.E.
Deposit date:1997-12-05
Release date:1998-02-25
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structural and thermodynamic characterization of the interaction of the SH3 domain from Fyn with the proline-rich binding site on the p85 subunit of PI3-kinase.
Biochemistry, 35, 1996
1AZG
DownloadVisualize
BU of 1azg by Molmil
NMR STUDY OF THE SH3 DOMAIN FROM FYN PROTO-ONCOGENE TYROSINE KINASE KINASE COMPLEXED WITH THE SYNTHETIC PEPTIDE P2L CORRESPONDING TO RESIDUES 91-104 OF THE P85 SUBUNIT OF PI3-KINASE, MINIMIZED AVERAGE (PROBMAP) STRUCTURE
Descriptor: FYN, PRO-PRO-ARG-PRO-LEU-PRO-VAL-ALA-PRO-GLY-SER-SER-LYS-THR
Authors:Renzoni, D.A, Pugh, D.J.R, Siligardi, G, Das, P, Morton, C.J, Rossi, C, Waterfield, M.D, Campbell, I.D, Ladbury, J.E.
Deposit date:1997-11-18
Release date:1998-02-25
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structural and thermodynamic characterization of the interaction of the SH3 domain from Fyn with the proline-rich binding site on the p85 subunit of PI3-kinase.
Biochemistry, 35, 1996
1D9E
DownloadVisualize
BU of 1d9e by Molmil
STRUCTURE OF E. COLI KDO8P SYNTHASE
Descriptor: 3-DEOXY-D-MANNO-OCTULOSONATE 8-PHOSPHATE SYNTHASE, SULFATE ION
Authors:Radaev, S, Dastidar, P, Patel, M, Woodard, R.W, Gatti, D.L.
Deposit date:1999-10-27
Release date:2000-05-10
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure and mechanism of 3-deoxy-D-manno-octulosonate 8-phosphate synthase.
J.Biol.Chem., 275, 2000
5ZH4
DownloadVisualize
BU of 5zh4 by Molmil
CRYSTAL STRUCTURE OF PfKRS WITH INHIBITOR CLADO-7
Descriptor: (3R)-6,8-dihydroxy-3-{[(2S,6R)-6-methyloxan-2-yl]methyl}-3,4-dihydro-1H-2-benzopyran-1-one, CHLORIDE ION, LYSINE, ...
Authors:Babbar, P, Malhotra, N, Sharma, M, Harlos, K, Reddy, D.S, Manickam, Y, Sharma, A.
Deposit date:2018-03-11
Release date:2018-06-27
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Specific Stereoisomeric Conformations Determine the Drug Potency of Cladosporin Scaffold against Malarial Parasite
J. Med. Chem., 61, 2018
5ZH3
DownloadVisualize
BU of 5zh3 by Molmil
CRYSTAL STRUCTURE OF PfKRS WITH INHIBITOR CLADO-6
Descriptor: (3S)-6,8-dihydroxy-3-{[(2R,6R)-6-methyloxan-2-yl]methyl}-3,4-dihydro-1H-2-benzopyran-1-one, LYSINE, Lysine-tRNA ligase
Authors:Babbar, P, Malhotra, N, Sharma, M, Harlos, K, Reddy, D.S, Manickam, Y, Sharma, A.
Deposit date:2018-03-11
Release date:2018-06-27
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.86 Å)
Cite:Specific Stereoisomeric Conformations Determine the Drug Potency of Cladosporin Scaffold against Malarial Parasite
J. Med. Chem., 61, 2018
5ZH2
DownloadVisualize
BU of 5zh2 by Molmil
CRYSTAL STRUCTURE OF PfKRS WITH INHIBITOR CLADO-5
Descriptor: (3R)-6,8-dihydroxy-3-{[(2R,6R)-6-methyloxan-2-yl]methyl}-3,4-dihydro-1H-2-benzopyran-1-one, 3[N-MORPHOLINO]PROPANE SULFONIC ACID, CHLORIDE ION, ...
Authors:Babbar, P, Malhotra, N, Sharma, M, Harlos, K, Reddy, D.S, Manickam, Y, Sharma, A.
Deposit date:2018-03-11
Release date:2018-06-27
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.66 Å)
Cite:Specific Stereoisomeric Conformations Determine the Drug Potency of Cladosporin Scaffold against Malarial Parasite
J. Med. Chem., 61, 2018
5ZH5
DownloadVisualize
BU of 5zh5 by Molmil
CRYSTAL STRUCTURE OF PfKRS WITH INHIBITOR CLADO-2
Descriptor: (3S)-6,8-dihydroxy-3-{[(2R,6S)-6-methyloxan-2-yl]methyl}-3,4-dihydro-1H-2-benzopyran-1-one, CHLORIDE ION, LYSINE, ...
Authors:Babbar, P, Malhotra, N, Sharma, M, Harlos, K, Reddy, D.S, Manickam, Y, Sharma, A.
Deposit date:2018-03-11
Release date:2018-06-27
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (3.08 Å)
Cite:Specific Stereoisomeric Conformations Determine the Drug Potency of Cladosporin Scaffold against Malarial Parasite
J. Med. Chem., 61, 2018
8Z2A
DownloadVisualize
BU of 8z2a by Molmil
Crystal structure of Aspergillus terreus glutamate dehydrogenase (AtGDH) with sequential mutations
Descriptor: Glutamate dehydrogenase
Authors:Godsora, B.K.J, Bhaumik, P.
Deposit date:2024-04-12
Release date:2025-03-05
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Conformational flexibility associated with remote residues regulates the kinetic properties of glutamate dehydrogenase.
Protein Sci., 34, 2025
8Z2B
DownloadVisualize
BU of 8z2b by Molmil
Crystal structure of apo Aspergillus terreus glutamate dehydrogenase (AtGDH) in the partially closed conformation (form II)
Descriptor: Glutamate dehydrogenase
Authors:Godsora, B.K.J, Bhaumik, P.
Deposit date:2024-04-12
Release date:2025-03-05
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Conformational flexibility associated with remote residues regulates the kinetic properties of glutamate dehydrogenase.
Protein Sci., 34, 2025
8Z29
DownloadVisualize
BU of 8z29 by Molmil
Crystal structure of apo Aspergillus terreus glutamate dehydrogenase (AtGDH) deletion mutant (T262-A263)
Descriptor: CHLORIDE ION, Glutamate dehydrogenase
Authors:Godsora, B.K.J, Bhaumik, P.
Deposit date:2024-04-12
Release date:2025-03-05
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Conformational flexibility associated with remote residues regulates the kinetic properties of glutamate dehydrogenase.
Protein Sci., 34, 2025
8Z2C
DownloadVisualize
BU of 8z2c by Molmil
Crystal structure of apo Aspergillus terreus glutamate dehydrogenase (AtGDH) with open and partially closed conformations (form I)
Descriptor: ACETATE ION, Glutamate dehydrogenase
Authors:Godsora, B.K.J, Bhaumik, P.
Deposit date:2024-04-12
Release date:2025-03-05
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Conformational flexibility associated with remote residues regulates the kinetic properties of glutamate dehydrogenase.
Protein Sci., 34, 2025
8XAK
DownloadVisualize
BU of 8xak by Molmil
Structure of Pif1-G4 complex
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent DNA helicase PIF1, DNA (34-MER), ...
Authors:Hong, Z, Song, H.
Deposit date:2023-12-04
Release date:2024-07-31
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Eukaryotic Pif1 helicase unwinds G-quadruplex and dsDNA using a conserved wedge.
Nat Commun, 15, 2024

237423

PDB entries from 2025-06-11

PDB statisticsPDBj update infoContact PDBjnumon