Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
7WVN
DownloadVisualize
BU of 7wvn by Molmil
SARS-CoV-2 Omicron S-open
Descriptor: Spike glycoprotein
Authors:Li, J.W, Cong, Y.
Deposit date:2022-02-10
Release date:2022-03-02
Last modified:2022-05-04
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Molecular basis of receptor binding and antibody neutralization of Omicron.
Nature, 604, 2022
7WVO
DownloadVisualize
BU of 7wvo by Molmil
SARS-CoV-2 Omicron S-open-2
Descriptor: Spike glycoprotein
Authors:Li, J.W, Cong, Y.
Deposit date:2022-02-10
Release date:2022-03-02
Last modified:2022-05-04
Method:ELECTRON MICROSCOPY (3.41 Å)
Cite:Molecular basis of receptor binding and antibody neutralization of Omicron.
Nature, 604, 2022
7XLB
DownloadVisualize
BU of 7xlb by Molmil
Cryo-EM structure of human pannexin 2
Descriptor: Pannexin-2
Authors:Hang, Z, Huawei, Z, Daping, W.
Deposit date:2022-04-21
Release date:2023-03-15
Method:ELECTRON MICROSCOPY (3.44 Å)
Cite:Cryo-EM structure of human heptameric pannexin 2 channel
Nat Commun, 14, 2023
8H8F
DownloadVisualize
BU of 8h8f by Molmil
Structure of Xenopus tropicalis acid-sensitive outwardly rectifying channel ASOR (resting state)
Descriptor: Proton-activated chloride channel
Authors:Chi, P, Wang, X, Li, J, Li, K, Zhang, Y, Geng, J, Wu, J, Deng, D.
Deposit date:2022-10-22
Release date:2024-05-01
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (3.48 Å)
Cite:Molecular insights into the inhibition of proton-activated chloride channel by transfer RNA.
Cell Res., 34, 2024
8H8E
DownloadVisualize
BU of 8h8e by Molmil
Structure of the dimeric Xenopus tropical acid-sensitive outwardly rectifying channel ASOR trimer bound with tRNA (closed state)
Descriptor: Proton-activated chloride channel, tRNA (75-MER)of Spodoptera frugiperda
Authors:Chi, P, Wang, X, Li, J, Li, K, Zhang, Y, Geng, J, Wu, J, Deng, D.
Deposit date:2022-10-22
Release date:2024-05-01
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (3.81 Å)
Cite:Molecular insights into the inhibition of proton-activated chloride channel by transfer RNA.
Cell Res., 34, 2024
8H8D
DownloadVisualize
BU of 8h8d by Molmil
Structure of Xenopus tropicalis acid-sensitive outwardly rectifying channel ASOR trimer bound with tRNA (intermediate state)
Descriptor: Proton-activated chloride channel
Authors:Chi, P, Wang, X, Li, J, Li, K, Zhang, Y, Geng, J, Wu, J, Deng, D.
Deposit date:2022-10-22
Release date:2024-05-01
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (4.26 Å)
Cite:Molecular insights into the inhibition of proton-activated chloride channel by transfer RNA.
Cell Res., 34, 2024
8JKZ
DownloadVisualize
BU of 8jkz by Molmil
Cryo-EM structure of the prokaryotic SPARSA system complex
Descriptor: NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Piwi domain protein, Sir2 superfamily protein
Authors:Xu, X, Zhen, X, Long, F.
Deposit date:2023-06-02
Release date:2024-01-24
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structural basis of antiphage immunity generated by a prokaryotic Argonaute-associated SPARSA system.
Nat Commun, 15, 2024
8JL0
DownloadVisualize
BU of 8jl0 by Molmil
Cryo-EM structure of the prokaryotic SPARSA system complex
Descriptor: DNA (5'-D(P*AP*CP*GP*AP*CP*GP*TP*CP*TP*AP*AP*GP*AP*AP*AP*CP*CP*AP*TP*TP*AP*T)-3'), NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Piwi domain protein, ...
Authors:Xu, X, Zhen, X, Long, F.
Deposit date:2023-06-02
Release date:2024-01-24
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structural basis of antiphage immunity generated by a prokaryotic Argonaute-associated SPARSA system.
Nat Commun, 15, 2024
7DEG
DownloadVisualize
BU of 7deg by Molmil
Cryo-EM structure of a heme-copper terminal oxidase dimer provides insights into its catalytic mechanism
Descriptor: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, 1,2-Distearoyl-sn-glycerophosphoethanolamine, 2-[(2~{E},6~{E},10~{Z},14~{Z},18~{Z},23~{R})-3,7,11,15,19,23,27-heptamethyloctacosa-2,6,10,14,18-pentaenyl]naphthalene-1,4-dione, ...
Authors:Fei, S, Hartmut, M, Yun, Z, Guoliang, Z, Shuangbo, Z.
Deposit date:2020-11-04
Release date:2021-08-04
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:The Unusual Homodimer of a Heme-Copper Terminal Oxidase Allows Itself to Utilize Two Electron Donors.
Angew.Chem.Int.Ed.Engl., 60, 2021
8JU6
DownloadVisualize
BU of 8ju6 by Molmil
Structure of human TRPV4 with antagonist GSK279
Descriptor: 1-({(5S,7S)-3-[5-(2-hydroxypropan-2-yl)pyrazin-2-yl]-7-methyl-2-oxo-1-oxa-3-azaspiro[4.5]decan-7-yl}methyl)-1H-benzimidazole-6-carbonitrile, Transient receptor potential cation channel subfamily V member 4,3C-GFP
Authors:Fan, J, Lei, X.
Deposit date:2023-06-24
Release date:2024-05-08
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (3.45 Å)
Cite:Structural Pharmacology of TRPV4 Antagonists.
Adv Sci, 11, 2024
8JU5
DownloadVisualize
BU of 8ju5 by Molmil
Structure of human TRPV4 with antagonist A1
Descriptor: 4-[(3~{S},4~{S})-4-(aminomethyl)-1-(5-chloranylpyridin-2-yl)sulfonyl-4-oxidanyl-pyrrolidin-3-yl]oxy-2-fluoranyl-benzenecarbonitrile, Transient receptor potential cation channel subfamily V member 4,3C-GFP
Authors:Fan, J, Lei, X.
Deposit date:2023-06-24
Release date:2024-05-08
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (3.74 Å)
Cite:Structural Pharmacology of TRPV4 Antagonists.
Adv Sci, 11, 2024
8JVJ
DownloadVisualize
BU of 8jvj by Molmil
Structure of human TRPV4 with antagonist A2 and RhoA
Descriptor: Transforming protein RhoA, Transient receptor potential cation channel subfamily V member 4,3C-GFP, [6-[[4-(2,4-dimethyl-1,3-thiazol-5-yl)-1,3-thiazol-2-yl]amino]pyridin-3-yl]-[(1~{S},5~{R})-3-[5-(trifluoromethyl)pyrimidin-2-yl]-3,8-diazabicyclo[3.2.1]octan-8-yl]methanone
Authors:Fan, J, Lei, X.
Deposit date:2023-06-28
Release date:2024-05-08
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (3.44 Å)
Cite:Structural Pharmacology of TRPV4 Antagonists.
Adv Sci, 11, 2024
8JVI
DownloadVisualize
BU of 8jvi by Molmil
Structure of human TRPV4 with antagonist A2
Descriptor: Transient receptor potential cation channel subfamily V member 4,3C-GFP, [6-[[4-(2,4-dimethyl-1,3-thiazol-5-yl)-1,3-thiazol-2-yl]amino]pyridin-3-yl]-[(1~{S},5~{R})-3-[5-(trifluoromethyl)pyrimidin-2-yl]-3,8-diazabicyclo[3.2.1]octan-8-yl]methanone
Authors:Fan, J, Lei, X.
Deposit date:2023-06-28
Release date:2024-05-08
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (3.21 Å)
Cite:Structural Pharmacology of TRPV4 Antagonists.
Adv Sci, 11, 2024
8K9B
DownloadVisualize
BU of 8k9b by Molmil
SARS-CoV-2 spike protein in complex with one S2H5 Fab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of S2H5 Fab, Light chain of S2H5 Fab, ...
Authors:Hong, Q, Cong, Y.
Deposit date:2023-07-31
Release date:2024-07-31
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Molecular basis of SARS-CoV-2 immune evasion of NTD neutralizing antibodies.
Dian Zi Xian Wei Xue Bao, 2024
8K9M
DownloadVisualize
BU of 8k9m by Molmil
SARS-CoV-2 spike protein in complex with two S2H5 Fabs on NTD-1 and NTD-3
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of S2H5 Fab, Light chain of S2H5 Fab, ...
Authors:Hong, Q, Cong, Y.
Deposit date:2023-08-01
Release date:2024-07-31
Method:ELECTRON MICROSCOPY (6.8 Å)
Cite:Molecular basis of SARS-CoV-2 immune evasion of NTD neutralizing antibodies.
Dian Zi Xian Wei Xue Bao, 2024
8K9J
DownloadVisualize
BU of 8k9j by Molmil
SARS-CoV-2 spike protein in complex with two S2H5 Fabs on NTD-1 and NTD-2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of S2H5 Fab, Light chain of S2H5 Fab, ...
Authors:Hong, Q, Cong, Y.
Deposit date:2023-08-01
Release date:2024-07-31
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (6.6 Å)
Cite:Molecular basis of SARS-CoV-2 immune evasion of NTD neutralizing antibodies.
Dian Zi Xian Wei Xue Bao, 2024
2LWV
DownloadVisualize
BU of 2lwv by Molmil
NMR solution structure of PawS Derived Peptide 6 (PDP-6)
Descriptor: PawS Derived Peptide 6 (PDP-6)
Authors:Elliott, A.G, Mylne, J.S, Rosengren, K.
Deposit date:2012-08-06
Release date:2013-08-21
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Evolutionary origins of a bioactive peptide buried within Preproalbumin.
Plant Cell, 26, 2014
2LWT
DownloadVisualize
BU of 2lwt by Molmil
NMR solution structure of PawS Derived Peptide 5 (PDP-5)
Descriptor: PawS Derived Peptide 5 (PDP-5)
Authors:Elliott, A.G, Mylne, J.S, Rosengren, K.
Deposit date:2012-08-06
Release date:2013-08-21
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Evolutionary origins of a bioactive peptide buried within Preproalbumin.
Plant Cell, 26, 2014
2LX4
DownloadVisualize
BU of 2lx4 by Molmil
NMR solution structure of peptide a2N(1-17) from Mus musculus V-ATPase
Descriptor: V-type proton ATPase 116 kDa subunit a isoform 2
Authors:Dip, P, Gruber, G, Marshansky, V.
Deposit date:2012-08-14
Release date:2013-01-09
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:The N Termini of a-Subunit Isoforms Are Involved in Signaling between Vacuolar H+-ATPase (V-ATPase) and Cytohesin-2.
J.Biol.Chem., 288, 2013
8ZH6
DownloadVisualize
BU of 8zh6 by Molmil
Yeast-expressed polio type 2 expanded virus-like particles
Descriptor: VP1, VP2, VP3
Authors:Hong, Q, Cong, Y.
Deposit date:2024-05-10
Release date:2024-09-18
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:High-yield production, immunogenicity and structure of yeast-expressed polio type 2 stabilized virus-like particles
To Be Published
8ZB6
DownloadVisualize
BU of 8zb6 by Molmil
Yeast-expressed polio type 2 stabilized virus-like particles
Descriptor: SPHINGOSINE, VP1, VP2, ...
Authors:Hong, Q, Cong, Y.
Deposit date:2024-04-26
Release date:2024-09-18
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:High-yield production, immunogenicity and structure of yeast-expressed polio type 2 stabilized virus-like particles
To Be Published
7DK3
DownloadVisualize
BU of 7dk3 by Molmil
SARS-CoV-2 S trimer, S-open
Descriptor: Spike glycoprotein
Authors:Xu, C, Cong, Y.
Deposit date:2020-11-23
Release date:2020-12-16
Last modified:2021-02-17
Method:ELECTRON MICROSCOPY (6 Å)
Cite:Conformational dynamics of SARS-CoV-2 trimeric spike glycoprotein in complex with receptor ACE2 revealed by cryo-EM.
Sci Adv, 7, 2021
7DD2
DownloadVisualize
BU of 7dd2 by Molmil
S-3C1-F2 structure, two RBDs are up and one RBD is down, the two up RBD bind with a 3C1 fab.
Descriptor: Spike glycoprotein, The heavy chain of 3C1 fab, The light chain of 3C1 fab
Authors:Cong, Y, Liu, C.X.
Deposit date:2020-10-27
Release date:2020-12-02
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (5.6 Å)
Cite:Development and structural basis of a two-MAb cocktail for treating SARS-CoV-2 infections.
Nat Commun, 12, 2021
7DK4
DownloadVisualize
BU of 7dk4 by Molmil
S-2H2-F3a structure, two RBDs are up and one RBD is down, each RBD binds with a 2H2 Fab.
Descriptor: Spike glycoprotein, The heavy chain of 2H2 Fab, The light chain of 2H2 Fab
Authors:Cong, Y, Wang, Y.F.
Deposit date:2020-11-23
Release date:2020-12-02
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Development and structural basis of a two-MAb cocktail for treating SARS-CoV-2 infections.
Nat Commun, 12, 2021
7DDN
DownloadVisualize
BU of 7ddn by Molmil
SARS-Cov2 S protein at open state
Descriptor: Spike glycoprotein
Authors:Cong, Y, Liu, C.X.
Deposit date:2020-10-29
Release date:2020-11-25
Last modified:2021-01-27
Method:ELECTRON MICROSCOPY (6.3 Å)
Cite:Development and structural basis of a two-MAb cocktail for treating SARS-CoV-2 infections.
Nat Commun, 12, 2021

226262

PDB entries from 2024-10-16

PDB statisticsPDBj update infoContact PDBjnumon