PDB: 32 resultsInfo pagesStatus searchChemie searchBIRD

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8CRL	Crystal structure of LplA1 in complex with the inhibitor C3 (Listeria monocytogenes) Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, SODIUM ION, ... Authors: Dienemann, J.-N, Chen, S.-Y, Hitzenberger, M, Sievert, M.L, Hacker, S.M, Prigge, S.T, Zacharias, M, Groll, M, Sieber, S.A. Deposit date: 2023-03-08 Release date: 2023-06-07 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.6 Å) Cite: A Chemical Proteomic Strategy Reveals Inhibitors of Lipoate Salvage in Bacteria and Parasites. Angew.Chem.Int.Ed.Engl., 62, 2023
8CRJ	Crystal structure of LplA1 in complex with lipoyl-AMP (Listeria monocytogenes) Descriptor: 1,2-ETHANEDIOL, 5'-O-[(R)-({5-[(3R)-1,2-DITHIOLAN-3-YL]PENTANOYL}OXY)(HYDROXY)PHOSPHORYL]ADENOSINE, GLYCEROL, ... Authors: Dienemann, J.-N, Chen, S.-Y, Hitzenberger, M, Sievert, M.L, Hacker, S.M, Prigge, S.T, Zacharias, M, Groll, M, Sieber, S.A. Deposit date: 2023-03-08 Release date: 2023-06-07 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.6 Å) Cite: A Chemical Proteomic Strategy Reveals Inhibitors of Lipoate Salvage in Bacteria and Parasites. Angew.Chem.Int.Ed.Engl., 62, 2023
8CRI	Crystal structure of LplA1 in complex with lipoic acid (Listeria monocytogenes) Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, LIPOIC ACID, ... Authors: Dienemann, J.-N, Chen, S.-Y, Hitzenberger, M, Sievert, M.L, Hacker, S.M, Prigge, S.T, Zacharias, M, Groll, M, Sieber, S.A. Deposit date: 2023-03-08 Release date: 2023-06-07 Last modified: 2024-06-19 Method: X-RAY DIFFRACTION (2.1 Å) Cite: A Chemical Proteomic Strategy Reveals Inhibitors of Lipoate Salvage in Bacteria and Parasites. Angew.Chem.Int.Ed.Engl., 62, 2023
7X1K	Crystal structure of the flagellar expression regulator DegU from Listeria monocytogenes Descriptor: Chemotaxis protein CheY Authors: Oh, H.B, Lee, S, Yoon, S.I. Deposit date: 2022-02-24 Release date: 2022-08-10 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.39 Å) Cite: Structural and biochemical analyses of the flagellar expression regulator DegU from Listeria monocytogenes. Sci Rep, 12, 2022
7TJK	S. cerevisiae ORC bound to 84 bp ARS1 DNA and Cdc6 (state 2) with docked Orc6 N-terminal domain Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Cell division control protein 6, DNA, ... Authors: Schmidt, J.M, Yang, R, Kumar, A, Hunker, O, Bleichert, F. Deposit date: 2022-01-16 Release date: 2022-10-05 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (2.7 Å) Cite: A mechanism of origin licensing control through autoinhibition of S. cerevisiae ORC·DNA·Cdc6. Nat Commun, 13, 2022
7TJJ	S. cerevisiae ORC bound to 84 bp ARS1 DNA and Cdc6 (state 1) with docked Orc6 N-terminal domain Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Cell division control protein 6, DNA, ... Authors: Schmidt, J.M, Yang, R, Kumar, A, Hunker, O, Bleichert, F. Deposit date: 2022-01-16 Release date: 2022-10-05 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (2.7 Å) Cite: A mechanism of origin licensing control through autoinhibition of S. cerevisiae ORC·DNA·Cdc6. Nat Commun, 13, 2022
7TJI	S. cerevisiae ORC bound to 84 bp ARS1 DNA and Cdc6 (state 2) with flexible Orc6 N-terminal domain Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Cell division control protein 6, DNA, ... Authors: Schmidt, J.M, Yang, R, Kumar, A, Hunker, O, Bleichert, F. Deposit date: 2022-01-16 Release date: 2022-10-05 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (2.7 Å) Cite: A mechanism of origin licensing control through autoinhibition of S. cerevisiae ORC·DNA·Cdc6. Nat Commun, 13, 2022
7TJH	S. cerevisiae ORC bound to 84 bp ARS1 DNA and Cdc6 (state 1) with flexible Orc6 N-terminal domain Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Cell division control protein 6, DNA, ... Authors: Schmidt, J.M, Yang, R, Kumar, A, Hunker, O, Bleichert, F. Deposit date: 2022-01-16 Release date: 2022-10-05 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (2.5 Å) Cite: A mechanism of origin licensing control through autoinhibition of S. cerevisiae ORC·DNA·Cdc6. Nat Commun, 13, 2022
7TJF	S. cerevisiae ORC bound to 84 bp ARS1 DNA Descriptor: ADENOSINE-5'-TRIPHOSPHATE, DNA, 84 bp ARS1, ... Authors: Schmidt, J.M, Yang, R, Kumar, A, Hunker, O, Bleichert, F. Deposit date: 2022-01-16 Release date: 2023-01-18 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (2.6 Å) Cite: A mechanism of origin licensing control through autoinhibition of S. cerevisiae ORC·DNA·Cdc6. Nat Commun, 13, 2022
7TEC	Structure of the Listeria monocytogenes GlnR-DNA complex to 3.45 Angstrom Descriptor: DNA (5'-D(*CP*GP*TP*GP*TP*CP*AP*GP*AP*TP*AP*AP*TP*CP*TP*GP*AP*CP*AP*CP*G)-3'), HTH-type transcriptional regulator GlnR Authors: Schumacher, M.A, Brennan, R.G. Deposit date: 2022-01-04 Release date: 2022-06-29 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (3.45 Å) Cite: Molecular dissection of the glutamine synthetase-GlnR nitrogen regulatory circuitry in Gram-positive bacteria. Nat Commun, 13, 2022
7MCA	Structure of the S. cerevisiae origin recognition complex bound to the replication initiator Cdc6 and the ARS1 origin DNA. Descriptor: Cell division control protein 6, DNA (85-MER), MAGNESIUM ION, ... Authors: Feng, X, Li, H. Deposit date: 2021-04-01 Release date: 2021-06-02 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: The structure of ORC-Cdc6 on an origin DNA reveals the mechanism of ORC activation by the replication initiator Cdc6. Nat Commun, 12, 2021
7JK6	Structure of Drosophila ORC in the active conformation Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Origin recognition complex subunit 1, ... Authors: Schmidt, J.M, Bleichert, F. Deposit date: 2020-07-27 Release date: 2020-09-09 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (4 Å) Cite: Structural mechanism for replication origin binding and remodeling by a metazoan origin recognition complex and its co-loader Cdc6. Nat Commun, 11, 2020
7JK5	Structure of Drosophila ORC bound to DNA Descriptor: ADENOSINE-5'-TRIPHOSPHATE, DNA (32-MER), MAGNESIUM ION, ... Authors: Schmidt, J.M, Bleichert, F. Deposit date: 2020-07-27 Release date: 2020-09-09 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: Structural mechanism for replication origin binding and remodeling by a metazoan origin recognition complex and its co-loader Cdc6. Nat Commun, 11, 2020
7JK4	Structure of Drosophila ORC bound to AT-rich DNA and Cdc6 Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Cell division control protein, DNA (34-MER), ... Authors: Schmidt, J.M, Bleichert, F. Deposit date: 2020-07-27 Release date: 2020-09-09 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Structural mechanism for replication origin binding and remodeling by a metazoan origin recognition complex and its co-loader Cdc6. Nat Commun, 11, 2020
7JK3	Structure of Drosophila ORC bound to GC-rich DNA and Cdc6 Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Cell division control protein, DNA (33-MER), ... Authors: Schmidt, J.M, Bleichert, F. Deposit date: 2020-07-27 Release date: 2020-09-09 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Structural mechanism for replication origin binding and remodeling by a metazoan origin recognition complex and its co-loader Cdc6. Nat Commun, 11, 2020
7JK2	Structure of Drosophila ORC bound to poly(dA/dT) DNA and Cdc6 (conformation 1) Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Cell division control protein, DNA (33-MER), ... Authors: Schmidt, J.M, Bleichert, F. Deposit date: 2020-07-27 Release date: 2020-09-09 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Structural mechanism for replication origin binding and remodeling by a metazoan origin recognition complex and its co-loader Cdc6. Nat Commun, 11, 2020
7JGS	Structure of Drosophila ORC bound to poly(dA/dT) DNA and Cdc6 (conformation 2) Descriptor: ADENOSINE-5'-TRIPHOSPHATE, AT22044p1, Cell division control protein, ... Authors: Schmidt, J.M, Bleichert, F. Deposit date: 2020-07-19 Release date: 2020-09-09 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Structural mechanism for replication origin binding and remodeling by a metazoan origin recognition complex and its co-loader Cdc6. Nat Commun, 11, 2020
7JGR	Structure of Drosophila ORC bound to DNA (84 bp) and Cdc6 Descriptor: ADENOSINE-5'-TRIPHOSPHATE, AT22044p1, Cell division control protein, ... Authors: Schmidt, J.M, Bleichert, F. Deposit date: 2020-07-19 Release date: 2020-09-09 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: Structural mechanism for replication origin binding and remodeling by a metazoan origin recognition complex and its co-loader Cdc6. Nat Commun, 11, 2020
6ZHG	Ca2+-ATPase from Listeria Monocytogenes in complex with AlF Descriptor: Calcium-transporting ATPase, MAGNESIUM ION, TETRAFLUOROALUMINATE ION Authors: Basse Hansen, S, Dyla, M, Neumann, C, Quistgaard, E.M.H, Lauwring Andersen, J, Kjaergaard, M, Nissen, P. Deposit date: 2020-06-23 Release date: 2021-05-19 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (4 Å) Cite: The Crystal Structure of the Ca 2+ -ATPase 1 from Listeria monocytogenes reveals a Pump Primed for Dephosphorylation. J.Mol.Biol., 433, 2021
6ZHF	Calcium ATPase-1 from Listeria monocytogenes in complex with BeF Descriptor: BERYLLIUM TRIFLUORIDE ION, Calcium-transporting ATPase, MAGNESIUM ION Authors: Basse Hansen, S, Dyla, M, Neumann, C, Quistgaard, E.M.H, Lauwring Andersen, J, Kjaergaard, M, Nissen, P. Deposit date: 2020-06-23 Release date: 2021-05-19 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (4 Å) Cite: The Crystal Structure of the Ca 2+ -ATPase 1 from Listeria monocytogenes reveals a Pump Primed for Dephosphorylation. J.Mol.Biol., 433, 2021
6WGI	Atomic model of the mutant OCCM (ORC-Cdc6-Cdt1-Mcm2-7 with Mcm6 WHD truncation) loaded on DNA at 10.5 A resolution Descriptor: Cell division control protein 6, Cell division cycle protein CDT1, DNA (34-MER), ... Authors: Yuan, Z, Schneider, S, Dodd, T, Riera, A, Bai, L, Yan, C, Magdalou, I, Ivanov, I, Stillman, B, Li, H, Speck, C. Deposit date: 2020-04-05 Release date: 2020-07-15 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (10 Å) Cite: Structural mechanism of helicase loading onto replication origin DNA by ORC-Cdc6. Proc.Natl.Acad.Sci.USA, 117, 2020
6WGG	Atomic model of pre-insertion mutant OCCM-DNA complex(ORC-Cdc6-Cdt1-Mcm2-7 with Mcm6 WHD truncation) Descriptor: Cell division control protein 6, Cell division cycle protein CDT1, DNA (41-MER), ... Authors: Yuan, Z, Schneider, S, Dodd, T, Riera, A, Bai, L, Yan, C, Magdalou, I, Ivanov, I, Stillman, B, Li, H, Speck, C. Deposit date: 2020-04-05 Release date: 2020-07-15 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (8.1 Å) Cite: Structural mechanism of helicase loading onto replication origin DNA by ORC-Cdc6. Proc.Natl.Acad.Sci.USA, 117, 2020
6WGC	Atomic model of semi-attached mutant OCCM-DNA complex (ORC-Cdc6-Cdt1-Mcm2-7 with Mcm6 WHD truncation) Descriptor: Cell division control protein 6, DNA (41-MER), DNA replication licensing factor MCM3, ... Authors: Yuan, Z, Schneider, S, Dodd, T, Riera, A, Bai, L, Yan, C, Magdalou, I, Ivanov, I, Stillman, B, Li, H, Speck, C. Deposit date: 2020-04-05 Release date: 2020-07-15 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (4.3 Å) Cite: Structural mechanism of helicase loading onto replication origin DNA by ORC-Cdc6. Proc.Natl.Acad.Sci.USA, 117, 2020
6SFW	Cryo-EM Structure of the ClpX component of the ClpXP1/2 degradation machinery. Descriptor: ATP-dependent Clp protease ATP-binding subunit ClpX Authors: Gatsogiannis, C, Merino, F, Raunser, S. Deposit date: 2019-08-02 Release date: 2019-10-16 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (6 Å) Cite: Cryo-EM structure of the ClpXP protein degradation machinery. Nat.Struct.Mol.Biol., 26, 2019
6RQC	Cryo-EM structure of an MCM loading intermediate Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, DNA (88-MER), ... Authors: Miller, T.C.R, Locke, J, Costa, A. Deposit date: 2019-05-15 Release date: 2019-11-20 Last modified: 2024-05-22 Method: ELECTRON MICROSCOPY (4.4 Å) Cite: Mechanism of head-to-head MCM double-hexamer formation revealed by cryo-EM. Nature, 575, 2019

 

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