5XKM
Crystal structure of human phosphodiesterase 2A in complex with 6-methyl-N-(1-(4-(trifluoromethoxy)phenyl)propyl)pyrazolo[1,5-a]pyrimidine-3-carboxamide
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0004114 | molecular_function | 3',5'-cyclic-nucleotide phosphodiesterase activity |
A | 0007165 | biological_process | signal transduction |
A | 0008081 | molecular_function | phosphoric diester hydrolase activity |
B | 0004114 | molecular_function | 3',5'-cyclic-nucleotide phosphodiesterase activity |
B | 0007165 | biological_process | signal transduction |
B | 0008081 | molecular_function | phosphoric diester hydrolase activity |
C | 0004114 | molecular_function | 3',5'-cyclic-nucleotide phosphodiesterase activity |
C | 0007165 | biological_process | signal transduction |
C | 0008081 | molecular_function | phosphoric diester hydrolase activity |
D | 0004114 | molecular_function | 3',5'-cyclic-nucleotide phosphodiesterase activity |
D | 0007165 | biological_process | signal transduction |
D | 0008081 | molecular_function | phosphoric diester hydrolase activity |
E | 0004114 | molecular_function | 3',5'-cyclic-nucleotide phosphodiesterase activity |
E | 0007165 | biological_process | signal transduction |
E | 0008081 | molecular_function | phosphoric diester hydrolase activity |
F | 0004114 | molecular_function | 3',5'-cyclic-nucleotide phosphodiesterase activity |
F | 0007165 | biological_process | signal transduction |
F | 0008081 | molecular_function | phosphoric diester hydrolase activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 6 |
Details | binding site for residue MG A 2001 |
Chain | Residue |
A | ASP697 |
A | HOH2105 |
A | HOH2116 |
A | HOH2124 |
A | HOH2143 |
A | HOH2167 |
site_id | AC2 |
Number of Residues | 6 |
Details | binding site for residue ZN A 2002 |
Chain | Residue |
A | ASP808 |
A | HOH2116 |
A | HOH2161 |
A | HIS660 |
A | HIS696 |
A | ASP697 |
site_id | AC3 |
Number of Residues | 5 |
Details | binding site for residue MG A 2003 |
Chain | Residue |
A | GLU785 |
A | HOH2154 |
A | HOH2190 |
A | HOH2196 |
A | HOH2213 |
site_id | AC4 |
Number of Residues | 17 |
Details | binding site for residue 87R A 2004 |
Chain | Residue |
A | HIS656 |
A | THR768 |
A | LEU770 |
A | HIS773 |
A | THR805 |
A | ASP808 |
A | LEU809 |
A | GLN812 |
A | ILE826 |
A | TYR827 |
A | PHE830 |
A | GLN859 |
A | PHE862 |
A | ILE866 |
A | ILE870 |
A | HOH2115 |
A | HOH2132 |
site_id | AC5 |
Number of Residues | 6 |
Details | binding site for residue MG B 2001 |
Chain | Residue |
B | ASP697 |
B | HOH2106 |
B | HOH2110 |
B | HOH2142 |
B | HOH2144 |
B | HOH2154 |
site_id | AC6 |
Number of Residues | 6 |
Details | binding site for residue ZN B 2002 |
Chain | Residue |
B | HIS660 |
B | HIS696 |
B | ASP697 |
B | ASP808 |
B | HOH2110 |
B | HOH2132 |
site_id | AC7 |
Number of Residues | 15 |
Details | binding site for residue 87R B 2003 |
Chain | Residue |
B | HIS656 |
B | THR768 |
B | LEU770 |
B | HIS773 |
B | THR805 |
B | ASP808 |
B | LEU809 |
B | ILE826 |
B | TYR827 |
B | PHE830 |
B | GLN859 |
B | PHE862 |
B | ILE866 |
B | HOH2153 |
B | HOH2164 |
site_id | AC8 |
Number of Residues | 6 |
Details | binding site for residue MG C 2001 |
Chain | Residue |
C | ASP697 |
C | HOH2103 |
C | HOH2114 |
C | HOH2136 |
C | HOH2137 |
C | HOH2149 |
site_id | AC9 |
Number of Residues | 6 |
Details | binding site for residue ZN C 2002 |
Chain | Residue |
C | HIS660 |
C | HIS696 |
C | ASP697 |
C | ASP808 |
C | HOH2114 |
C | HOH2119 |
site_id | AD1 |
Number of Residues | 17 |
Details | binding site for residue 87R C 2003 |
Chain | Residue |
C | HIS656 |
C | THR768 |
C | LEU770 |
C | HIS773 |
C | THR805 |
C | ASP808 |
C | LEU809 |
C | GLN812 |
C | ILE826 |
C | TYR827 |
C | PHE830 |
C | GLN859 |
C | PHE862 |
C | ILE866 |
C | ILE870 |
C | HOH2150 |
C | HOH2155 |
site_id | AD2 |
Number of Residues | 6 |
Details | binding site for residue MG D 2001 |
Chain | Residue |
D | ASP697 |
D | HOH2107 |
D | HOH2118 |
D | HOH2139 |
D | HOH2144 |
D | HOH2162 |
site_id | AD3 |
Number of Residues | 6 |
Details | binding site for residue ZN D 2002 |
Chain | Residue |
D | ASP808 |
D | HOH2118 |
D | HOH2157 |
D | HIS660 |
D | HIS696 |
D | ASP697 |
site_id | AD4 |
Number of Residues | 4 |
Details | binding site for residue MG D 2003 |
Chain | Residue |
D | GLU785 |
D | HOH2174 |
D | HOH2191 |
E | HOH2143 |
site_id | AD5 |
Number of Residues | 17 |
Details | binding site for residue 87R D 2004 |
Chain | Residue |
D | HIS656 |
D | THR768 |
D | LEU770 |
D | HIS773 |
D | THR805 |
D | ASP808 |
D | LEU809 |
D | GLN812 |
D | ILE826 |
D | TYR827 |
D | PHE830 |
D | LEU858 |
D | GLN859 |
D | PHE862 |
D | ILE866 |
D | HOH2120 |
D | HOH2143 |
site_id | AD6 |
Number of Residues | 6 |
Details | binding site for residue MG E 2001 |
Chain | Residue |
E | ASP697 |
E | HOH2102 |
E | HOH2103 |
E | HOH2114 |
E | HOH2144 |
E | HOH2172 |
site_id | AD7 |
Number of Residues | 6 |
Details | binding site for residue ZN E 2002 |
Chain | Residue |
E | HIS660 |
E | HIS696 |
E | ASP697 |
E | ASP808 |
E | HOH2102 |
E | HOH2135 |
site_id | AD8 |
Number of Residues | 15 |
Details | binding site for residue 87R E 2003 |
Chain | Residue |
E | HIS656 |
E | THR768 |
E | LEU770 |
E | HIS773 |
E | THR805 |
E | ASP808 |
E | LEU809 |
E | GLN812 |
E | ILE826 |
E | LEU858 |
E | GLN859 |
E | PHE862 |
E | ILE866 |
E | HOH2108 |
E | HOH2111 |
site_id | AD9 |
Number of Residues | 6 |
Details | binding site for residue MG F 2001 |
Chain | Residue |
F | ASP697 |
F | HOH4001 |
F | HOH4005 |
F | HOH4013 |
F | HOH4063 |
F | HOH4065 |
site_id | AE1 |
Number of Residues | 6 |
Details | binding site for residue ZN F 2002 |
Chain | Residue |
F | HIS660 |
F | HIS696 |
F | ASP697 |
F | ASP808 |
F | HOH4001 |
F | HOH4042 |
site_id | AE2 |
Number of Residues | 16 |
Details | binding site for residue 87R F 2003 |
Chain | Residue |
F | HIS656 |
F | THR768 |
F | LEU770 |
F | HIS773 |
F | THR805 |
F | ASP808 |
F | LEU809 |
F | ILE826 |
F | TYR827 |
F | LEU858 |
F | GLN859 |
F | PHE862 |
F | ILE866 |
F | ILE870 |
F | HOH4004 |
F | HOH4025 |
Functional Information from PROSITE/UniProt
site_id | PS00126 |
Number of Residues | 12 |
Details | PDEASE_I_1 3'5'-cyclic nucleotide phosphodiesterase domain signature. HDLdHrGtnNsF |
Chain | Residue | Details |
A | HIS696-PHE707 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 6 |
Details | ACT_SITE: Proton donor => ECO:0000250|UniProtKB:O76083 |
Chain | Residue | Details |
A | HIS656 | |
B | HIS656 | |
C | HIS656 | |
D | HIS656 | |
E | HIS656 | |
F | HIS656 |
site_id | SWS_FT_FI2 |
Number of Residues | 18 |
Details | BINDING: BINDING => ECO:0000269|PubMed:15938621, ECO:0000269|PubMed:19828435, ECO:0000269|PubMed:23899287, ECO:0007744|PDB:1Z1L, ECO:0007744|PDB:3IBJ, ECO:0007744|PDB:3ITM, ECO:0007744|PDB:3ITU, ECO:0007744|PDB:4HTX, ECO:0007744|PDB:4HTZ, ECO:0007744|PDB:4JIB |
Chain | Residue | Details |
A | HIS660 | |
D | HIS660 | |
D | ASP697 | |
D | ASP808 | |
E | HIS660 | |
E | ASP697 | |
E | ASP808 | |
F | HIS660 | |
F | ASP697 | |
F | ASP808 | |
A | ASP697 | |
A | ASP808 | |
B | HIS660 | |
B | ASP697 | |
B | ASP808 | |
C | HIS660 | |
C | ASP697 | |
C | ASP808 |
site_id | SWS_FT_FI3 |
Number of Residues | 6 |
Details | BINDING: BINDING => ECO:0000269|PubMed:15938621, ECO:0000269|PubMed:19828435, ECO:0000269|PubMed:23899287, ECO:0007744|PDB:1Z1L, ECO:0007744|PDB:3ITM, ECO:0007744|PDB:3ITU, ECO:0007744|PDB:4HTX, ECO:0007744|PDB:4HTZ, ECO:0007744|PDB:4JIB |
Chain | Residue | Details |
A | HIS696 | |
B | HIS696 | |
C | HIS696 | |
D | HIS696 | |
E | HIS696 | |
F | HIS696 |